EMLSAT00000002281, EMLSAT00000002281-698128 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000002281
Unique NameEMLSAT00000002281-698128
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s142supercontigLSalAtl2s142:70792..73450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000002281 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000002281EMLSAG00000002281-685047Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000010102EMLSAE00000010102-719030Lepeophtheirus salmonisexon
EMLSAE00000010103EMLSAE00000010103-719031Lepeophtheirus salmonisexon
EMLSAE00000010104EMLSAE00000010104-719032Lepeophtheirus salmonisexon
EMLSAE00000010105EMLSAE00000010105-719033Lepeophtheirus salmonisexon
EMLSAE00000010106EMLSAE00000010106-719034Lepeophtheirus salmonisexon
EMLSAE00000010107EMLSAE00000010107-719035Lepeophtheirus salmonisexon
EMLSAE00000010108EMLSAE00000010108-719036Lepeophtheirus salmonisexon
EMLSAE00000010109EMLSAE00000010109-719037Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771332auto771332Lepeophtheirus salmonispolypeptide
EMLSAP00000002281EMLSAP00000002281Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000002281

>EMLSAP00000002281 ID=EMLSAP00000002281|Name=EMLSAP00000002281|organism=Lepeophtheirus salmonis|type=polypeptide|length=563bp
MSHSKEGNRRPIARLKGEAFDIYIRRNRLVIGRNSSTKGEVDVHMGNSSF
ISRRHVEICHDPKGLFFLLCNGKNGIFVDGTFQRKGAPPLQLAKTCSLRF
PSTNIGLQFWSLIDEEDVIEKKEDTPPSNVIKPISINIPSNNVTNSNFHS
SPPTSPAGTISVPNSCPTSPNSGRLHGYGAIRRTPQQQTQVQSPTFPLDV
DENKSDLSQNNVVYPSSDXSQNVSPTTTISNSGGNSQQDDSKPPFSYAQL
IVQAISQASEKQLTLSGIYSYITKNYPYYRTADKGWQNSIRHNLSLNRYF
VKVPRSQEEPGKGSFWRIDPVSEGKLVEAAFRRRRQRGVPCFRTPFVSST
SRSAPSSPSNNVGMSGLMTPESLSREASPAPAEIHFQSTSPEEPIEIQSL
XAPVINATVLTTTTANQPFQMTAGQPIQIATTRPGLIVTHQIGNGSASSD
AGNHSRLMVSTPQLKVLNGGNKDDIKGETHKIIAGAYPGTPVILQTAALS
SSPTYLTTDGGAVKRVFVSHTMESGLSDTPKVTLSLAASDEQRNHPRVEV
KSTFDNDHTHIKL
back to top

mRNA from alignment at LSalAtl2s142:70792..73450-

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000002281-698128 ID=EMLSAT00000002281-698128|Name=EMLSAT00000002281|organism=Lepeophtheirus salmonis|type=mRNA|length=2659bp|location=Sequence derived from alignment at LSalAtl2s142:70792..73450- (Lepeophtheirus salmonis)
TCGAAGAATATGTCGCATTCAAAGGAAGGAAACCGTCGTCCCATTGCTCG
GCTCAAAGGGGAGGCATTTGATATCTACATACGCCGAAATAGACTTGTCA
TTGGAAGGAATTCCTCAACAAAGGGAGAAGTGGATGTCCATATGGGAAAC
TCTAGCTTCATCTCCCGAAGACACGTCGAAATATGTCATGATCCAAAGGG
TCTCTTCTTCCTCCTTTGTAACGGAAAGAATGGAATATTCGTGGATGGAA
CATTTCAACGCAAAGGAGCCCCTCCACTACAACTCGCAAAGACGTAATTA
TTTTTATTATATTATTACGTCCCAAAAAAGAATATCCATCATTATCAAAT
TCACATTTTATATAATCATTAAAGCCCTTTATATATAGTCCTTCCCTAAT
CATGAAGATTATCTTGATACAAGAAATTCACAGCTCACTGACTGATGATT
CATTTCTCTACATTATATATTATAATTCGTATTGAACAACTTTTAATCAT
ATATTTTTTTTAGGTGTTCTTTAAGGTTTCCGAGCACGAATATCGGACTT
CAATTCTGGTCCCTCATAGATGAAGAAGATGTGATAGAAAAAAAAGAAGA
TACGCCACCTTCGAATGTTATTAAACCCATCAGCATAAACATTCCAAGTA
ATAATGTTACAAATAGTAACTTTCATAGTTCACCTCCCACTTCTCCAGCT
GGGACAATAAGGTAAATAGTAATAAAATTGCAAAATGCAGTACAAATATT
TTTAAGTTTTATTAATTTAATAATGTAGTTTACTTTGAATTTTATATTTT
ATGTCTTTTCTTATTAATTGTTCCAACTGTTTTGAATATCAGATAAATTA
ATTGATGAATATATCAATTTTTTTTAAAGCATGAAATAGCGTGGATCGTT
AATAATATAGTTAGGTTATTAATAAGTATTTAATTTTTTTAAATTTGTTA
CTGATCAAGTGTACCCAACTCCTGTCCCACTAGTCCCAATAGTGGACGAC
TCCATGGGTATGGAGCTATTAGGCGTACTCCTCAACAGCAAACTCAAGTA
CAGTCTCCTACTTTTCCTCTGGATGTTGACGAAAATAAATCTGATTTAAG
TCAAAATAATGTTGTTTATCCATCTTCAGATGKCAGCCAAAATGTTTCTC
CAACAACAACCATTTCTAATTCTGGAGGAAATTCTCAGGTAATTGCTTAT
GTTTCTATGTAACTCTACTACCACCTGATTTTATACTTATTCCTCTTGTA
AACTACTGAATTTGAGTTTATAGTATATAAGTTTTCTTAATATATTCTGG
TCAAGTTCAAAGGAATGTACTGAATATTTAGATTTTTGATATTATGATTG
TGTATTATTATTTATCTTAATTAACATTTCAGCAAGATGACTCAAAACCT
CCATTCTCTTACGCGCAACTCATTGTGCAAGCTATATCTCAAGCATCTGA
GAAGCAGTTGACCCTTTCAGGAATTTATTCTTACATTACAAAAAACTATC
CTTACTATCGTACAGCAGATAAAGGATGGCAAAATTCAATTCGTCATAAT
TTGTCACTCAATAGATATTTTGTTAAGGTGCCTCGTTCTCAAGAGGAACC
TGGGAAAGGTTCTTTTTGGAGAATCGACCCTGTATCAGAAGGGAAGTTAG
TTGAAGCTGCGTTTCGTCGAAGGAGACAGCGTGGTGTTCCATGTTTCAGA
ACACCATTCGTATCTTCCACTAGGTATTTTTTTTGCAAATATATAATTAA
TCTTATATCTGATACTCATTAACTTAGTCGTAGTGCACCCTCGTCACCTA
GCAATAATGTCGGAATGTCTGGTTTGATGACACCTGAATCTTTATCAAGA
GAAGCTTCTCCTGCTCCAGCCGAGATTCATTTTCAATCAACTAGTCCAGA
AGAGCCCATAGGTACCGGAGTTTTTATTTTATTTTTTAACTTAACATCTA
TAAGGTGTAAAGCAAGTCATTTGTTCTTTTTTTAGTAGTTCTTTTGTAGA
CTATATTAATATGAATTCAAATGCTTTCAGAAATCCAAAGTCTCRCCGCC
CCTGTCATTAACGCTACGGTCTTGACGACTACAACAGCTAATCAACCATT
TCAAATGACTGCTGGGCAGCCTATTCAAATTGCAACTACACGTCCGGGTT
TAATAGTTACGCATCAAATTGGGAATGGATCTGCTTCCTCAGATGCTGGC
AATCATTCTCGTTTAATGGTATCTACGCCACAACTGAAAGTTCTCAACGG
GGGAAATAAAGACGATAGTATAATTATATATAACTCTTTTTTTAAATTAA
TAAATGAAGTATTCTAATATTCTTATTTTATATAGTAAAAGGAGAAACTC
ATAAAATCATTGCTGGAGCTTATCCTGGAACCCCTGTAATTTTACAGACT
GCTGCATTAAGGTTGTCTGGCCTGCTTGCTATTAATTAATTAAATTAAAC
CATTTTAATACTTTAGTTCATCACCAACGTACCTGACGACTGATGGAGGT
GCTGTAAAGCGGGTTTTTGTATCTCATACAATGGAATCCGGCCTTTCTGA
CACTCCTAAAGTCACTTTAAGTCTTGCTGCCTCTGATGAGCAAAGAAATC
ATCCTCGTGTTGAAGTCAAATCAACTTTTGATAATGATCATACTCATATA
AAGTTATAA
back to top
Add to Basket