EMLSAT00000003167, EMLSAT00000003167-699014 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003167
Unique Name	EMLSAT00000003167-699014
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1768	supercontig	LSalAtl2s1768:4803..9186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003167 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003167	EMLSAG00000003167-685933	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000013884	EMLSAE00000013884-722812	Lepeophtheirus salmonis	exon
EMLSAE00000013885	EMLSAE00000013885-722813	Lepeophtheirus salmonis	exon
EMLSAE00000013886	EMLSAE00000013886-722814	Lepeophtheirus salmonis	exon
EMLSAE00000013887	EMLSAE00000013887-722815	Lepeophtheirus salmonis	exon
EMLSAE00000013888	EMLSAE00000013888-722816	Lepeophtheirus salmonis	exon
EMLSAE00000013889	EMLSAE00000013889-722817	Lepeophtheirus salmonis	exon
EMLSAE00000013890	EMLSAE00000013890-722818	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto768506	auto768506	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003167	EMLSAP00000003167	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1768:4803..9186+

protein sequence of EMLSAP00000003167

>EMLSAP00000003167 ID=EMLSAP00000003167|Name=EMLSAP00000003167|organism=Lepeophtheirus salmonis|type=polypeptide|length=365bp
MCFKYNIKYERENGMMLGRVRLVCNRKKLIQQICIILIFGSIIYNYFLDF
ESLRWTINTSQMVENATFNLQKQEKMMIFSEISSREIKNEETPTEPFTCN
TIQVIKSFNICVFQKNDVVSNHVKTGGWETHLALLIFQFFQIYKNTILFD
IGSNIGMHSMSGAISDSKAVWSLDAVREATLVLRQSSLKSNLQNKIRILN
AGISSQRGLFSLWSEDKGNVGRSRLFDTQGEGSVIIPTFTLTDYLNYLVS
FYDQRPQSIFIKMDIESMECKTILGSLSALNSSNYHIPVLVVEWIFNQFP
KTECPLELEIQLKRELNRLDYIPFNLGTKKYLDVLIPWRFQLLDVVWFKR
KPTEELRKTLKFISS

mRNA from alignment at LSalAtl2s1768:4803..9186+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003167-699014 ID=EMLSAT00000003167-699014|Name=EMLSAT00000003167|organism=Lepeophtheirus salmonis|type=mRNA|length=4384bp|location=Sequence derived from alignment at LSalAtl2s1768:4803..9186+ (Lepeophtheirus salmonis)
CAAAAGGATATAATTTCCATATACGAAGGAGACGAATTCGTTGTGTTTCT
ACATACATGTGCTTCAAATACAACATAAAGTATGAGAGAGAGAATGGAAT
GATGCTTGGGCGTGTAAGGTTGGTTTGCAATAGAAAAAAATTAATCCAAC
AGATATGTATCATCTTGATATTTGGGTCAATCATATATAATTACTTTTTG
GACTTTGAGAGTTTGAGATGGACCATTAATACAAGTCAAATGGTAGAAAA
TGCTACATTCAATCTTCAAAAGCAAGAAAAGATGATGATTTTCTCAGAAA
TCAGCTCCAGAGAGATCAAAAACGAGGAAACTCCAAGTGAAATACTCTTT
TACAAAATAAAAAAAGATACTAACAATTAAGAATATTCTTATTTGTTTTT
AGCTGAACCCTTCACGTGTAACACGATACAAGTTATCAAGAGCTTCAACA
TTTGTGTCTTTCAAAAGAATGACGTAGTATCGAATCATGTCAAGACTGGA
GGATGGGAAACTCATCTTGCGTTATTGATATTTCAATTCTTTCAGATATA
TAAGAGTAGGTTGTACCTATGAATCTATAAACCTATAGCTTTTTTATATA
CTACATTTCTTAGACACCATACTCTTTGACATTGGATCAAACATTGGAAT
GCATTCTATGAGTGGTGCTATATCTGATTCCAAAGCTGTTTGGTCATTGG
ACGCCGTTCGAGAAGCAACTCTCGTTCTCAGACAATCTTCGTTAAAATCA
AATCTTCAAAATAAAATAAGGTATTACTATAAATAGCGATAGGTTAAAAA
AAAAATTGTCAAACATCAGACCCAAATTTAGTAGTAATCAGAAAACTCTG
TATTTTCATTGGTGTATTAGATTGCATAGTAAACTGAAAGTGAGGCCATG
TTTGAGGCATACAGGTTATGGATAAACATAGTTGTTAAACAAAATGAACC
AAAAAGTGAAATAAACATCATCTTATGGCTTTAAAAATGAATGAAAACTG
AGCAGTTGCATAGGATAAAGATTTTATTATTCTTCATTAGCTTCTTGAAT
GATGACGTAATTTGTAAATTCACTAATATGCTGTTAAAATAAACATGTCA
CGACGTTACCTCGCTAACACGAAAATACCATATGTATTATGTCAAGTTTA
CTAATATCTGGAGTGAACCAAAGGTCAATCACTTAGTGTCATGTAGGGGG
ATGTAGGTGAATTTTTTATTTTTTATGGTTAAAAATCAAACGGGAAAAAG
TAATTGACTTTGTACAATATTTCTACTTGTTTATTTCATCAGCATCAGAG
AATCTATGGGAAGTCACGTGCTACAATTAATATTTCTTCCACAAAAACAA
CATTTTTGGACTGAAATAAAAAAGTTTTGATTAAAAAAATTGCGTAGAGT
CTATGTTTCAACCTGGAATTGCTACACAAATTACCTTTAATATTTATCTA
CAAGTCAATAACAAAAAAATTACCATAACTATAAAGTTTAGATCGAACAT
TTTGTCCCTTAAATTTGGGAGTAATCTTTTTAGCAAAGGAAGGACAATAT
ATACAACGTAAATATTTAATGATGAATTACATTTTCACATTTATCACAAA
TAGAGTATATTTTTTCATAGCTATACCACAAATTATTGGCGTTTTAAACA
TTTTATTTTAAAAAATATTTATTGTAATAATTATAATTTATTACCATAAT
TATTTGAATTTAGAGATGTCAATAGGTTAATAATGTATTTTTGAATATAT
ATTATTTTATGAAGTATATTAATACATTTAAAGGCTAAATAAGAAATATT
TTATTTATTTTTATTTTGTTGATATATGCCTTGATTCAAGAAATGAATCA
AAGGCATGATTATTAATAGTTTGAAAGACCTAATTATTTTTCGTTTAATC
GATAATTTTTACAACGTTTTTACAATTGTTTTAGTTTAATTATAGTGGGG
CATACTATGCTTTCGATTGTTTTTGTCAAATGCCTTTTTTTCCTCGTCTG
CTTTTGCAATTTCAAAGAGTTTATCCTTCATGACTGGCTTTTTATCGACT
CTCAACATCAACTGTCAAAAGAGAAAGACAAAATTTAAAAAAAACAAAAG
CTAGTCTTCTGRATTTCTTTAGTTATCAACTGTTAATTATAACTTATAAC
ATAGTTCTTAATCCTTACATACATTGAATTGATAATCATATCAATGACAG
AATATGAAATGAGACCCATTATAAACTAAGGCCTTTGATTGCTATAAATT
AATGAAAAAATCAAAACACTATCCCATCCATTTTTAGTTCATAGTTCGTA
GAGTAAGCTGTTTTAAATCATACAAGAGTCATATGAAAATGAAAATACAC
TGCAATATCTGTGTTAACATATTTAAAAAATSGAGCCGTGTTTCCTATTT
ATTCAGTATCGTCACTTCTATGTATTTTTTATTTATTCTGTTTCTTTTTG
GAGGAAAGGTTGAGTGATACAATAAAGGTAACGACCTGATCACGGAATCT
ATCACGGCGTTACCTTACCTACACAAAAATACCCGATGTATTTTAAGCTG
TCCATCCCCTCGATTGATACGTCATCGCTATTTCATAATTTATTCTTTTT
TTAAATTAACGAAGTAATAAATTATCCTTTACTTATGCTCCGTTTCCAAA
AGGACAAGAATACAATTTCTTGTCGATCCCTTGTTGTATATGGCCATCTT
ATTATTTCCATGAAAGAATTTTGGCTATAATAAAGAAAGACAAATGCATT
GCTACGCTTTTAATTAAAATATTACAAAGTAATATTACAATACATTATCG
AATAAAATACTATGTAGAATTTTAATATTATATAATGTTATGTAATTCAT
TTTAAAAAATTGTGGAAAAATAATATAACAATGATAGTCTGGGAGTACTT
AAAGGATAATAATAGTNNATATAATGTTATGTAATTCATTTTAAAAAATT
GTGGAAAAATAATATAACAATGATAGTCTGGGAGTACTTAAAGGATAATA
ATAGTTGGTGTGATTGACTTATTTGGTCTACTACCAGATGATTTTTCGCC
CTTTTTTTGTTTCTTTTTCGAGGAAAGGTTATGTGATATAATAAAGTTAA
CGACGTTTTCACGTGATGTAAGCATTATTGTCGGCCATTTTGGGAATGAA
AATCCTTTTATTATTAATATTAAGGAAAATCCTTACCTATTGTTACTTAA
TGGGAACAACAAATTAAAATACATATACCTTWCTTTCTGTYTAGTCCCTT
TTTAGGGGGGGGGGGGATCAATTATTATTATTATATATATATATATGGAA
GCGCTCTATATGTTGATATTATAGGATATTGAATGCTGGTATTTCGTCCC
AAAGAGGACTCTTCTCTTTATGGAGTGAGGATAAAGGCAATGTTGGACGA
TCTCGATTATTTGATACTCAGGGTAAAATTATATACTTTCTACAAAATAT
ATTTAATAATAAAAAAAAGGGAACATTTTAAATATTTATATTGAATTTAA
TTATTAAAAATTTCTTCAGTTGACAAATCTTTATCATTTGTACAACAGAC
CTTTATATTTTTTAGGTGAGGGTTCCGTAATTATTCCAACCTTTACTTTG
ACTGATTATTTAAACTACTTGGTGTCATTCTACGATCAAAGACCTCAATC
CATATTCATAAAAATGGATATTGAGTCCATGGAATGTAAGACGATTCTTG
GATCCTTGAGTGCATTAAACGTATGTATAACGAAAATATTATAATAAAAC
TGTACATTGGGTACACGCATTATGTTAATTAATATATTTATTCTTATTAA
TCGTTGGAATTTCCTTCCTGAACAACATCTTCCACTATAATCCCTTTTCA
GAGTTCAAACTATCATATACCGGTTTTAGTGGTAGAATGGATATTTAATC
AATTCCCCAAAACAGAGTGTCCCCTTGAGCTTGAAATTCAATTGAAAAGA
GAACTAAGTAATGTGCAATTTTTAATTAAATTCAAGAATATATTTATTTT
GTTTTTTATTACTTCAGATAGACTGGACTATATTCCATTCAATTTAGGAA
CAAAGAAATATTTGGATGTTTTAATTCCATGGAGATTTCAACTTCTTGAT
GTAGTTTGGTTTAAAAGGAAGCCTACAGAGGAGTTAAGGAAAACTCTGAA
GTTTATATCATCATAGATCTCAGCAATATTGTTAAGAAGCAGGATTAGTA
TTTAGTGCTGTTATTCAGAATAATTTATATTTTGTAACTTTAATCAATGT
TTTTTAAGGAAATAAGTAAAAACGCTAAGGATGATATTGATATAACCAAG
ATAAAAGACATTTCTTTTGAATTTTTTATTTTACGTAGTCTCCTTGTAAC
TCGACATACTTCTCCCAGCGATGCTTCTGTCTTG

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