EMLSAT00000003214, EMLSAT00000003214-699061 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003214
Unique Name	EMLSAT00000003214-699061
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s177	supercontig	LSalAtl2s177:354241..358633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003214 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003214	EMLSAG00000003214-685980	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000014057	EMLSAE00000014057-722985	Lepeophtheirus salmonis	exon
EMLSAE00000014058	EMLSAE00000014058-722986	Lepeophtheirus salmonis	exon
EMLSAE00000014059	EMLSAE00000014059-722987	Lepeophtheirus salmonis	exon
EMLSAE00000014060	EMLSAE00000014060-722988	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto776780	auto776780	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003214	EMLSAP00000003214	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s177:354241..358633+

protein sequence of EMLSAP00000003214

>EMLSAP00000003214 ID=EMLSAP00000003214|Name=EMLSAP00000003214|organism=Lepeophtheirus salmonis|type=polypeptide|length=416bp
MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KXXXXXLNPKANREKMTQIMFETFNMPAMYVAIQAVLSLYASGRTTGIVM
DSGDGVSHTVPIYEGYALPHAILRLDLAGRELTNYLMKILTERGYSFTTT
AEREIVRDIKEKLCYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNE
RFRAPEALFQPSFLGMESCGVHETTYNSIMKCDVDIRKDLYANTVMSGGT
TMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ
QMWISKQEYDECGPSIFIVEFNMLQVKYYILGYALLLYGFVSSESLKREG
PSREERAIGFTDLGRSVVSGVLLGTLGLFAYGAISSQSTSRSSKPLAKLP
HHKPYFLPSVKEGEDI

mRNA from alignment at LSalAtl2s177:354241..358633+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003214-699061 ID=EMLSAT00000003214-699061|Name=EMLSAT00000003214|organism=Lepeophtheirus salmonis|type=mRNA|length=4393bp|location=Sequence derived from alignment at LSalAtl2s177:354241..358633+ (Lepeophtheirus salmonis)
ATAAAGAAATTTTTATCTCTCTTTTAAAAAAAGATATCAAATACAACGAG
TGTGAAAATAATCCAATGAAAAGTGAATAACTTTCTAATTATAGTTCAAT
TGAGACGCAAACAACATTTTATGTCCATATATGGATAAAAAATGACGATA
AGGTCGAGATTTGTAAGCGGTCAAGTATGGGTCAAAAAAAAAAAAAAGAA
TCACCCCCTTCGATAGAAGAGAAAGCAAACATTTATGAGCGTGCTACTTT
ACACCATGGGGGAAACTAAGATTCATTATATAAGGACACGAATCTAATAA
TTTTTGCTTCAGATTCTAGACTTGGATCGACATATCCACATTCGTGCCTT
AGACACCTTTATCTAATTTACATCAATCAATCATGTGTGACGAAGATGTT
GCTGCTCTTGTCGTTGACAATGGCTCCGGTATGTGCAAGGCCGGATTTGC
TGGTGATGATGCTCCCAGAGCTGTCTTTCCTTCCATCGTTGGTCGCCCAC
GTCACCAAGTATGAATCTTTCATTATTAATTATGATATAAGTAAAATATT
TAAAATTATTTATAATTAAAGTTTCTGCCTGAAATAATGAAAACTATCTT
TATTTTTCTTTTTAAATTTGGAACAAAAAATACAAAAATGCACTTTTGAT
ACGCATATTTGTTTTCCTTTTTCTTATTAAATTCACAACATTTAAGTAGT
ACAACTAATTATCAGTTATCTACTTATCTAATACTAGTAGATGAAATACT
AAAATTGCTTATAAAAATTGCCATGATTGTCAAATAATGTTATAGTCGAC
GATTTGCTAATAATATTACTTTTTTCTTTAATCTAGGGTGTAATGGTCGG
TATGGGTCAGAAGNNNNNNNNNNNNNCTCTTAACCCCAAGGCTAACAGAG
AAAAGATGACCCAAATCATGTTTGAGACCTTCAACATGCCCGCCATGTAT
GTCGCTATCCAAGCTGTTCTCTCCCTCTATGCCTCTGGTCGTACCACTGG
TATTGTTATGGACTCTGGAGACGGTGTTTCCCACACCGTTCCCATCTATG
AAGGTTACGCTCTTCCTCATGCTATCCTTCGCTTGGACTTGGCTGGTCGT
GAACTCACCAACTACCTCATGAAAATCCTTACTGAGAGAGGTTACTCCTT
CACCACTACCGCTGAGCGTGAAATCGTTCGTGATATCAAGGAGAAGCTTT
GCTATGTTGCTCTTGACTTTGAACAAGAAATGGCCACTGCTGCTGCTTCC
TCCTCCCTTGAGAAGTCCTATGAACTTCCCGATGGCCAAGTTATCACAAT
TGGAAATGAGCGTTTCCGTGCCCCTGAAGCCCTCTTCCAACCTTCCTTCT
TGGGAATGGAATCCTGTGGTGTCCATGAAACCACTTACAATTCCATCATG
AAGTGTGATGTTGACATCCGTAAAGATCTCTATGCCAACACTGTCATGTC
TGGTGGAACCACCATGTACCCCGGTATCGCTGATCGTATGCAAAAGGAAA
TTACTGCTCTTGCTCCTTCCACTATCAAGATCAAGATCATTGCTCCCCCT
GAGAGAAAGTACTCTGTATGGATTGGAGGATCCATCTTGGCTTCCCTCTC
CACTTTCCAACAGATGTGGATCTCCAAGCAAGAATACGACGAATGTGGCC
CATCCATTGTCCACAGAAAGTGCTTCTAAAAAGCTGGCTCAAAGCCATAA
TAACATGCTTAATTCACATGTTTTATTCTTGTCATTCTGTTTTATTGTTT
AACACATAATATKCCTACTTACTACTACTACTACTACTACTGTCTACTAC
AATTTCAATCCATCACAAAACAGAAACAAGTCTCATAATAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTTTTGATAAGTA
ATTATAAGTAATTCATTATAYGAAGTATACCTGATCCAATGCTTCAACCA
TCATCATTAAAATTAGACAATTGCTCTATGTATTAATTTCAGTCTTTTTT
TAAAGATTATAATAAATATAAAATAGCATTGTTAATTAATTAATTATTCA
TTCATACTTTCTACCGTGTGGATTCATTAGTAAAAATCAACGAAGGTCTT
TGAAACGTAATTTACTTCATCAATAATAATAACAATTATTATCATACGAT
CGAGGGAAATGTAGGTATGTGTTGTGACCACGATTTTTTTAATTATGTAT
ATTCTACAAACCAAAACACATTTCTCCTTCAAACTCTTCCAAGGCCAGGG
GATCCATTCCGCCTCCGAGTCTTACGCGTGAAAGTTGACTTTATGTCATT
TTTTACTAATTTTTACTCAGTTTATAGTTGAATTTAATATGTTGCAAGTT
AAATATTATATATTGGGATACGCGTTGCTTCTCTATGGATTCGTTTCATC
GGAATCTCTTAAAAGAGAAGGACCATCTAGAGAAGAAAGAGGTAGATAAC
TGCTTAATTCAGAGTGTTTTTTGTATCCTTATAGTTGAAACAGTACCTAC
AAATTCAAATCTGAAAGGAAGTGATTAATAATTCAATAATATAAAACTAT
AGAAAATAATAAGGATAAACGGACTGTGCCGTGACTAGGATTTGTCTTCT
TTTTTTTTAGGGGGGGGGGGGGGCTTTTTTGCAATTGACATAATGTGTTT
TTTGAGAAAGAAAAATTGGAAAAAACAAAAAGTTTAGTTTTTCTATAACT
ATAAAATTTCCTCAAAAATGGTCACTGGCATAATCGTAGAGGAGTAACAT
ATTTTTGCCTAAATATACCAAGCTCATGAATGTAAATATTGCCTAAATTT
CAGTGAGCGTAAAACCCAAGCATGATGGAGTGTCATAAAAAATATGTTAC
CTTGAGAGACAACTTATCTACTCACAGAGATAAATTATATTGATCTTTAC
TCACTGATACTTTAAAATTTTCGAAATAGGTAGGAATAATTAATTAGAGC
ATTCCTATCCTTGTTCTTATCAAAATACACTAAAAAAATTAACGCTCACC
TCAATTTTGCGAATATTCACATCCATGCTGCTGCTTGTCATTAATATCGT
TAGTTTCCTGAGAATTGGGGAGGGGGCAATAGTTTTAGAGCCTCCAATCA
GGGCTGTCACTAGGATTTTTCTTGGGGGGGGTGGGGGAGAGAGAGTGTAG
AACTTTTAACAATTTGTGTTTACATTTTTAAAATATGTATTGTTTCTTTG
AATAACCCTTTTTAACGTAAGCCAGTATCGACCTTTTTGTTTCATTTTTA
AATAATAAAAACATATTAAACATCAAATTTTCTTACTTACAAATGACATC
CCATTTATTTGACTCTCCACACTCTCTTTTGGTGACGGCCATGAAATTTC
ATGTTCATTATTTCAAGGCTCTCCTCCCTTCATATTATTTTCTATTCATT
GATAAATTTTACTTTTATTGGGCTAATGATTTCTAAAGATAGACACAATA
CGATCAATGAGTAAAAACTAGTGCTGGGATTCAGTCTAAAAACTCTAAAC
CAGTGTAAGACCCTTATAATTTATAGTGCACCAAACTAATTCAATACTTT
AAATATGTTCTTTTGGATCCGGTCTTAAAGAAAGAAATAAGTCTAATTTA
AAATTAGGTCTAGACGGATTCTATAAATGAATTTTTGATGAGGTAAATTG
TGTTTCAAAATTGTAAACATCGACCTAGAATAACATCGTATGAAGTTAAA
TGTGCTACATTAATGATATTTGTAGGACTCATAAACCAGTATAGGCTAGA
AAATCAGACTATATATTTAGACCACAAAATTTTGTACACATTTTGAAAAC
GATTAAACTTGGATTTACGGTTTGAGATCGTGTCTGGATCAAAATATCTG
TCCAAACCACTCTAGAACAAATCTCTTAAGACTCAACTGGAAAATAAATA
TGTATTGTACCGAGTTTTGAGACATTTAAAAACCTAGAATCTACTTATGT
TAATTATTAATCATTGTTTTATGTTGACCAAATATACATGAAACACTCCC
TTTTCAGCCATTGGATTTACAGACCTTGGAAGAAGCGTGGTGTCTGGTGT
TCTGTTAGGAACTCTTGGATTATTTGCATATGGTGCAATCTCATCTCAGT
CTACATCTCGTAGTTCAAAGCCTCTTGCAAAATTACCTCATCATAAACCA
TATTTTCTTCCTAGTGTAAAGGAAGGAGAAGACATATAATTAAAAAAAAG
AAAAATAATTAAGCACCATTGTCTTCATCTTACTGCCTCTAATTCATTTG
TATCAAATTTGTTTAGAAGCTATAAATTCAACTTGATAAACAATTCAAAT
AATATTTTCTTGTCTCAAAAACATTATTATTTGTTAAATAAAT

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