EMLSAT00000003493, EMLSAT00000003493-699340 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003493
Unique Name	EMLSAT00000003493-699340
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s190	supercontig	LSalAtl2s190:418567..426512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003493 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003493	EMLSAG00000003493-686259	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000015187	EMLSAE00000015187-724115	Lepeophtheirus salmonis	exon
EMLSAE00000015188	EMLSAE00000015188-724116	Lepeophtheirus salmonis	exon
EMLSAE00000015189	EMLSAE00000015189-724117	Lepeophtheirus salmonis	exon
EMLSAE00000015190	EMLSAE00000015190-724118	Lepeophtheirus salmonis	exon
EMLSAE00000015191	EMLSAE00000015191-724119	Lepeophtheirus salmonis	exon
EMLSAE00000015192	EMLSAE00000015192-724120	Lepeophtheirus salmonis	exon
EMLSAE00000015193	EMLSAE00000015193-724121	Lepeophtheirus salmonis	exon
EMLSAE00000015194	EMLSAE00000015194-724122	Lepeophtheirus salmonis	exon
EMLSAE00000015195	EMLSAE00000015195-724123	Lepeophtheirus salmonis	exon
EMLSAE00000015196	EMLSAE00000015196-724124	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto777485	auto777485	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003493	EMLSAP00000003493	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s190:418567..426512+

protein sequence of EMLSAP00000003493

>EMLSAP00000003493 ID=EMLSAP00000003493|Name=EMLSAP00000003493|organism=Lepeophtheirus salmonis|type=polypeptide|length=1016bp
MSHFRSHFDGEYRRKPIVSIRGSSKTESREDLINRTQIERQNREIFRLKN
HNAVIIQSIFRGYFERNTQKQMLRKEFEHSIKNNSYSKSISDIGNYLRKF
NFFFNPEMDAQNLEWICNECLKRENEIIGLFDEEGDSKWFYRMAHLLLAF
TATGNTLLSHLLPKTNYFSCLRCIFERYPDIHPDVLLLLKRPLTYISPET
EDYNKLSLHSLTKSLLHPPFSESIFYRLLPSLHPFPFKEWVHVLKESELS
SISLFYAFLQLEKISLAEWSTSEYLEYIQVLSQLSLSLTKIFVTKEVDDE
SDSEDEMSDSNDENMKSVLSSQVQYSNPSLTDLIDGIKEKLNDKKWTSYL
IDSVVEKMDSEPVILKFLCRFLHNFMLTDNFLLTNYRIMYTLAFKPNILH
KIWSVILNCKQASLFGDPPLLLNVIAKGLRMHNDERYEIVPLLAVFTSLF
SFLLVTINDTEFYGNDRSWMPFTLKELTPMSLNLRDVALGLIQLAFPESR
LTIREDYQLAVQSARSPSNKMNKEDPKDVTMWXHLFKIIVKLLRQLHIRD
TRKQFCQDGHWINECVTLPSDRPSDISLRRSRHYQPFRGLRVFSREEMET
YGPPLSAKEMRLATILREMPYVISFNQRIVLFSQLISRDKADYQGDRVNF
LMGPSIDVTIRRKFIYEDALEKLSPEAEPNMKLKMRVEFKNIAGLREAGI
DGGGLFREFLGELVKTSFDPNRGFFRLTKDQRLYPNPSVHKIYEDFLPHY
FFIGRMLGKALYENMLVEFPLASFFLHKLLEKSSVKVDIDHLQSLDPELY
RNLLYLKNYDGCVQDLGLDFTIVNEEVGTTSVEELKRNGSSIPVTNVNRT
EYIHLIANYKLNKQIRLQSNAFRQGLSDVINLDWLKMFNYKELQLVISGA
ETEIDVSDLRNHTNYTGGYAVDHPTVVIFWNVVESMTETQKRHLLKFVTS
CSRPPLLGFKELDPPFCVHNAGAEPHRLPTASTCMNLLKLPNFEEEKILK
DKLLYAIESGSGFDLS

mRNA from alignment at LSalAtl2s190:418567..426512+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003493-699340 ID=EMLSAT00000003493-699340|Name=EMLSAT00000003493|organism=Lepeophtheirus salmonis|type=mRNA|length=7946bp|location=Sequence derived from alignment at LSalAtl2s190:418567..426512+ (Lepeophtheirus salmonis)
TTTGTTTTGACGAGTTTTATGCTTGTTAAAAAAAATTGTGGTTGTCAATG
TTATAGTCAGAAAAAGGCTCAAGTCATCTCATAAGAGTTACGACAGAATG
TCCCACTTTAGGAGTCACTTTGATGGAGAGTATCGACGTAAGCCGATTGT
TTCCATTCGGGGCTCATCTAAAACAGAGTCTCGAGAAGATTTAATTAACC
GAACTCAAATTGAGCGTCAGAATCGTGAGGTAACTTTACTAAGGCCTCTT
TTGACCTTTATCACTAGTTCTCAACTTAAAACTACTTATCTTTCTTTTCT
TAGATCTTCCGATTGAAAAATCATAATGCAGTTATAATTCAGAGTATATT
TAGAGGATACTTCGAAAGGAATACACAGAAGCAAATGCTTCGAAAAGAGT
TTGAACATTCCATCAAAAATAACAGTTACTCGAAGTCCATTTCTGATATT
GGGAACTATCTTCGAAAGTTCAATTTCTTTTTCAATCCAGAAATGGATGC
TCAGAATCTAGTAATAATTATAGTGATTCTTTTATAATTGAGTCCCGTTC
ATTTATATTCAAAAATTAAATATAGGAATGGATTTGTAACGAATGTCTCA
AAAGAGAAAACGAAATCATTGGACTGTTTGATGAAGAAGGAGACTCCAAA
TGGTTTTATAGAATGGCTCATCTTCTGCGTCATTTATTATTATNNNNNNN
NNNNNNNNNNNNNNNNTTTACCTATTAAGACTCTAGTTGCTTTTACTGCC
ACTGGAAATACTCTTTTATCTCATCTCTTACCCAAAACGAATTATTTTTC
ATGTCTTAGATGTATATTTGAAAGATACCCTGATATTCACCCAGATGTAC
TCCTTCTTTTAAAGCGACCTCTTACTTATATTAGTCCTGAAACGGAAGAC
TATAACAAACTTTCATTGCATTCTTTGACCAAGTCACTTCTTCATCCACC
TTTTTCAGAGTCTATTTTTTACCGTCTACTCCCCTCTTTACACCCCTTTC
CGTTCAAGGAATGGGTTCATGTTCTAAAGGAATCAGAGCTCTCCTCCATT
TCTTTATTCTACGCTTTTCTCCAGTTGGAAAAAATTTCTCTTGGTATGTC
ATTGTTTGTTTATTTCAGTTTTCATTATTTTATCATTCCATCAATACATT
TAGCTGAGTGGTCAACCTCAGAATATTTAGAGTACATTCAAGTCTTGAGT
CAATTATCATTATCTTTGACAAAAATATTTGTGACAAAAGAGGTGGATGA
TGAATCGGATTCAGAAGATGAGATGAGTGATTCGAATGATGAAAACATGA
AAAGTGTACTTTCTAGTCAAGTACAATATTCAAATCCTTCTCTGACGGAT
CTAATTGATGGTATCAAGGAGAAGTTAAATGATAAAAAATGGACATCATA
TTTGATTGACTCTGTTGTTGAAAAAATGGACAGTGAGCCTGTGATTCTTA
AATTCCTATGTAGATTTTTGCATAATTTTATGCTCACGGATAATTTTTTA
CTCACCAATTACCGAATAATGTACACTTTAGCATTCAAGCCGAACATTCT
TCATAAGATTTGGAGTGTTATTTTGAATTGCAAACAAGCATCCTTGTTCG
GTGATCCACCACTTCTACTAAATGTAAGAATGTTTACAAAACCTTAATAA
ACCCAAAATATAAGTGTATATTCTTTGATAGGTAATTGCCAAAGGTTTAC
GTATGCATAACGATGAACGCTATGAAATTGTTCCACTTTTAGCCGTCTTT
ACGTCTTTATTTAGTTTTCTCCTAGTTACTATAAATGATACAGAATTTTA
CGGTAATGATCGCTCGTGGATGCCTTTTACTTTGAAAGAACTAACTCCCA
TGTCCCTCAATCTGAGAGACGTTGCCCTTGGACTTATTCAACTAGCTTTC
CCTGAGTCCCGTCTTACAATAAGAGAGGATTACCAATTGGCGGTGCAGTC
AGCGCGTTCCCCAAGCAACAAAATGAACAAAGAAGATCCAAAAGATGTGA
CAATGTGGMCGCATCTTTTCAAGATAATAGTTAAATTACTTCGACAATTG
CACATTCGAGATACAAGGAAGCAATTTTGTCAGGATGGACATTGGATAAA
TGAATGTGTAACTTTACCCTCTGATCGTCCATCAGACATTTCTCTTCGAC
GATCTAGACATTATCAACCCTTTAGAGGACTTAGAGTGTTTTCGAGGGAA
GAAATGGAGACATATGGTCCACCATTATCTGCAAAAGAAATGAGACTTGC
TACAATTCTCCGAGAAATGCCTTATGTCATATCATTTAATCAGCGTATTG
TACTTTTTTCACAATTAATATCGAGAGATAAGGCTGACTATCAAGGAGAT
CGAGTCAACTTTCTTATGGGACCTTCCATTGATGTTACAATTCGAAGAAA
ATTTATTTATGAGGATGCCTTAGAGAAACTATCTCCTGAAGCAGGTTATT
TATTTATTTTATGACGCTGAATTCACATTAATTTTATATTCAAATTTCAG
AACCTAACATGAAGCTTAAAATGCGTGTTGAGTTCAAGAACATTGCTGGA
CTACGAGAAGCAGGAATAGATGGTGGTGGACTATTCAGAGAGTTTTTGGG
GGAACTTGTTAAAACATCTTTTGATCCTAATAGAGGATTTTTCAGACTTA
CAAAAGATCAAAGGTTATACCCTAATCCATCTGTACATAAGATTTACGAA
GATTTCTTGCCTCATTATTTTTTTATTGGGAGGATGTTAGGAAAAGCTCT
CTACGAAAATATGCTTGTGGAATTTCCACTTGCGAGTTTTTTTCTTCATA
AGTTACTTGAAAAAAGTTCAGTTAAAGTTGATATAGATCATCTTCAATCT
CTGGATCCAGAGCTTTATAGAAATCTCTTATATCTAAAAGTAAGTCAAAT
CTTATAATATATTCGAATGTTTTGTATGATTGATATTTTTAATTTTTAGA
ATTATGATGGATGTGTTCAAGACCTAGGATTAGACTTTACAATTGTTAAT
GAGGAAGTCGGAACAACTTCTGTCGAGGAGTTAAAGAGAAATGGTTCTTC
GATTCCAGTTACCAATGTCAATAGGACGGAATATATTCATCTTATTGCTA
ATTACAAGTTAAATAAGCAAATTCGATTACAATCGAATGCATTTCGGTAT
GTCTGATTTGGAGCATGATTTGGCCATTTTTGCTTTATTTTATTCATTAG
ACAGGGACTTTCTGATGTTATAAACCTTGACTGGTTAAAAATGTTTAATT
ACAAGGAACTTCAGTTGGTTATTTCCGGAGCAGAAACAGAAATTGATGTC
TCTGATCTCCGCAATCATACAAATTATACGGGTGGATATGCAGTTGATCA
TCCCACTGTTGTTATATTCTGGAATGTTGTTGAGTCCATGACTGAGACTC
AGAAGCGCCATTTGCTCAAATTTGTTACTAGTTGTTCACGACCTCCTTTA
TTAGGATTTAAGGTATTTCATGAATTTATGCTTGTTTGGGTCTTCCTAAT
TTTTGTTTTATTTTTAACAGGAGCTTGATCCTCCATTTTGCGTTCACAAC
GCAGGTGCAGAACCTCACCGTTTACCTACTGCTAGTACATGCATGAATCT
GTTGAAGCTACCTAATTTTGAGGAAGAGAAGATACTAAAAGATAAGTTGT
TGTACGCTATAGAATCAGGCTCAGGGTTCGATCTTAGTTAGTCTCTTACT
CAGAATAATCGAATGGTTATTCATCTAAGAGGATTTATTAAACAACCGAA
TAATTCGATTAAAAAATGTTAAAAAAGTATCGAATAAAGATGTACTATAA
TGATTTTTCCTGTAAAAATATTTTACATTATTATCAGTTTACTTCATTAG
TTGATAAAGAAATTGACATATAGTTGAGTTTAAAAAAATTAAAATGCACC
TTTATTGCACTTTAATTTACATTATTTTTAACAGTTGATCCGGTGTCGGA
TTCAAAGTCGGACTCATAATTATTTTCAATATTGTCCACAGAAGCAATTA
AGGTTGAGGATGAATATTCGTGATAGCTTTCAGAAGTCAGCTCCCTTTTA
CTTCCACAAGAAGGTAAATAATCTTCAAATTGATCACTTTGTTGGATTTT
GGAGGACGGATGTTTAATAGATGATCTAGAATTAAAAGCCTTAACCATGT
CTTCAAGAGATTGACAATAGTTTAAATATAAATGTTTTTGTGAATCCAAA
AAGTTTTTTGTTAGATCCAATTGATTTTTCAGCATATCATTTATAACATG
ATTTGCCGAGTTTAAATATGTTTCGGACAAATTAGTTCCATCTTGGGAGT
AATAGTTCATATCAAGAGTTGGATTGAAAAGATAATGACCATAAATATAT
TCCTTTCGTGGTAATTCTACTTGTGTGTATTGATCAACTTTACTTGATGT
CTTCGTTCTCTTTGGTGGCTTTTTATGTTTCTTTCGACCATCTTGAGTTT
TGACCAGGAATCTACATAATATATATACATTATTGATTGTATGATTTAAG
CAAGTAATAAGCGTGGAAAAAAACTTACGAAGTCTTTTTTTTCTCCGATA
CTTTTGAGTTAGAGGATGATTTTGTAGTTTTGCTAACACTTTTAGTTGAT
GTAGAGCTTGATTCTTTTAGTACCTTTAATGATTTTCCATTTTTAGTCGA
GCTAATATCACTTTTGTTATCAGATGCAATTCTCAGCTCAATGTATGAAC
TTTCATTGATTGAAATAACCTCAACAATTTCGTCAGTTTTTAAGGCCTTA
CTTTTGTCTGATAATATGGATTCAACTTCCTCTTCATTTATTTGATCTTC
ATCAAACTCTTCAATAACATGAATAGGAGAAATCGTGTTTGTTATGTGAG
ATAACGTATCAAGTGCGTGGTTCTCAATATCTGCCTCTGTACATTTACTA
ATATTTAAGCGCAAGTCCTGTTTTCCAGCTGTGTAAAGAAACTGCATTAT
AATTTATTTATATGTTGTGTACAGGATGTAACTTGTATAAGCAAATTGTA
CAAATTGCAATGAGAATAATAATTTAAAATGAGGGATTTACAGTACTTGA
GATGAGAATAATGTAACAATTGAATATTCCCTGGATGTTTGACATGTTAG
AGGTTTTATTTTTGACTATTTTAATAAAAATTACTTAAATATATGTATTT
TTTGGGCATATTATAAAGTTCAAATGCCCAGAGTTATACAACTCATAAAT
AGATAATAACTTACTCTTGTTAATATTTATGACCATGCAATTTTAATAGA
TTGAAATAAAATTATAATATCAATTAATAGTTACTAATTAGAAGGACCAA
CTTGTACAATTTGCTTATACAAATTTTAACTTGTATATACATCACAATTT
GTACACTATATATACCAGTTCAAAAACATAAATATACCTCGTTTCTTCAA
TAAACTTATAAATCTTGATGATGTGGAAGATAATGATTTATCATCATTCT
CAAGAACATGAAAATATTTCTGAGATTTAACTTCCGGAGACGGAATAATA
TCCTCTTTTTTTAATATCTGTTGACGTTTTTGGATTTCTTCAGAGGATGT
GGGCTCAGTGAATTCCGATAATTGTTCATCATTTTTTAGATTTTTGAATG
ATTCAGCATATTTCAAGTCAAATTTCATAAAATTGTCTAGGGCATTAGAG
TTTTGAGGAGCTTTGAATGTTTGTCTATGGGATAAGATTGAAAATACGAA
TGATGTAAGTTACTTATTAGAATCTCTTTTCATGATCTGCATTAGGAGGT
TAAATTTAATGCCGAAATACAAACATATAATGAAACGTACTTTGAGCTTA
GTTTTGTAGAAATAAATGGTATTTTATCCTCAAGTAAAGAGCAGGCAGAG
GAAGGCGTGGAAGGMGCCTTTTTCTTTAAAAATCTTGATTCTGCTAGTAA
ATCTTCTCCAAACTCTCTTGCTAATGAAGCCAGGTCTGAATCTTCCTCCT
CTTTTTCACTGTTTGCTTCTTTGTCCACATTACCATATTTCGCCTTGATT
TCAGATTGCTTCTTATGTAGTGTTTTGAGATAATTCTAAATGAAACAAGG
CAAGGAACATATAATTATATATTTAATTGATATTAAATAGGCCCTTACAC
TTAGGTCTGAGCACTTATTTTCATTAATATTTCCATATATAAGTGTAGGA
TTATACATCCTTTAAGTAAAGTTAAAACAAATAAATACGAAAAAAATTGA
AAACAGGTATGGATATGGGACTGCTTTCTAAAGCGACATAAGGTTGATGA
TCGAAAGAAAAAACTCACTATAAGCAGATGTTCATTTCACTAATGGATAA
TAATAACAATATGAAACACTTTTTAACCATAATTATAGAATTATTTAAAA
ATAAAAAGCTATATTCCTTAAAAATGTATGTATATTAAGGATAAAGTATC
CCCCGCATTTTGTATAAATAGGAAGGCGGTTGTGCAGTTTTCAAATTATA
AAAAAAATCAACTTTTATAGGTATTTTGTAATAATTTAATTTCTGATATG
GAAATATGTAACACTCCTAAACATACTCCTGAATAAAAGAGTAAAAAGAA
CCGTTAGTAGTACTGTTTTTAATCAGAGATTAAAATAGAAAAAAAGTTAG
CCAATAACCATGTTATCCATCATTCACCTTCAACATATTAATAGAACGTT
TTCACTGATGTCATAAATTACATCATGACTGAAGGAGACACTATCTTTGG
GGGCTCAATTTTGATATTTTTTCACAAAAAAAAAGAAAAAAAAAAGACTA
ATTTCTTATAAATATTGATGAAACACTTAATATTTGTATTTAATACTCTT
TGATGTAATTGATAAACAATTATATTTGAATTAAATCGAAGTAATAAAAT
GCCTGGATTTTTTTTTTTTTTGATTGATGTTAGGAACAAGAAAAATAGAA
GTAGATAATTAGAGAAAAATACATATTTTTAGTACATTTTAGGATAAGAT
CTGTAATAAAACTAGGCAATAGAGGGATACATTTATGGTAGACATTAAAG
TTTACCCAATAAATCTAAACTTAAAAAAGATCATTATTTCACCTATTTAA
AAAAAAAAAATGGAATATACACATTAAACAATTATCATTTCAATGATACA
AAGTATGTATCAGTAATACATATTGAAATACAGTATTACACTATGCAACA
GCAGTTTCAACCACCGGCTAAAACCGAGATTTATTATTGTTTTTTAAGAC
GTTGAACATGGAAGTATTAAACTACTATTAAAACCTTCAACTGGCATAGA
TTTGGCCTTTAGAGCCTTTTTTTAAATCTCATTTTTAGAATAGAATTTCA
ATTTAAAGCCATATTCTAGCGTGAAAGAGCCTATATAGATGATTATAAAA
GTTAAAATCAATTGATAAAAACATTCTAGCATATAAAAGATTAACGATTT
ATTAAGTTATCTTGATTACAATTCCAAAAAAAAAAATCGAGTACAAGGAA
CAGGGGCGTCCTCAGCGGGAGAGAGGCTGMAGCCCCCCCCCCCCCCAATG
AATGATTTCTTCTTTTTTTTCAAAAAAAGGAGGGAAATTTTTTAAGGATT
TCTTTTCTATAAAAATTGAAGTAAGAACATATTTTGGAAATTGATATTTG
TTCCCTATGGTTATATATTATAGTTAAAACTAAACCTTTAATTATAACTA
AAAAATATTCTTTTAGTTTAACTTTTGATTTTCTAATGTAAAATTTAATA
AATAAGAAATATAAGGTTGCGTGAAGAATGTTCCGAAATTAAAAATAATT
AAGTCGATTATATGACTTATTGTAATGAGTAATTAATATTCTAGAGCCAA
GGAAATTAACCCCAATAAAGGAGTATTTCATATCCAATGTATTTGATTAG
TATTTATTATAGATTTAGTTACCTAATCGACTTATTTATATTTAATTTCG
GTGCTTTTTTCATGCAACCCTGTATTGCTTATTTTTTATTATTTTT

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