EMLSAT00000003560, EMLSAT00000003560-699407 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003560
Unique Name	EMLSAT00000003560-699407
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s194	supercontig	LSalAtl2s194:749034..753913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003560 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003560	EMLSAG00000003560-686326	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000015495	EMLSAE00000015495-724423	Lepeophtheirus salmonis	exon
EMLSAE00000015496	EMLSAE00000015496-724424	Lepeophtheirus salmonis	exon
EMLSAE00000015497	EMLSAE00000015497-724425	Lepeophtheirus salmonis	exon
EMLSAE00000015498	EMLSAE00000015498-724426	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto779583	auto779583	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003560	EMLSAP00000003560	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s194:749034..753913+

protein sequence of EMLSAP00000003560

>EMLSAP00000003560 ID=EMLSAP00000003560|Name=EMLSAP00000003560|organism=Lepeophtheirus salmonis|type=polypeptide|length=670bp
MKVYPLISTQYLIFLLNGNVVWSKREELGVVRRLASFRGEDDKVQFSISA
FGEEMLFNFTRNKDLIPPGFKIKTILRSYKAKEEEALRSHFIYESSSFIA
SISDYGNNEIYGFISGQGKTIEINPLSKNLLSAVRSNPNAFGFDSPDTSE
IFLMKQIKLPSLSNDEHYFIDPNEIQDRYRHLDRRYSNKMQNLTIELAVF
VDYEAFNGLLDLYNSANKAFHVLLAHMNQVHALFKMRSLQTKVDISLTKL
EVLDREFFPKYIGERKHLLESFCNYQYKLNNPKDDNPNHWDLAVLLTGLN
LWTESSTRGRDYSTLGIAPTNGICTQTYSCAVAELRGRIKQEDQMPISSG
FGSSYIMAHEIGHTLGLSHDGSDDECSKDGFLMSSTRDRRGEAQWSECSA
RKLKILNKDLQCLYDSPGFSRVNLEQKTKYKGIPGFFIKSDKQCQLYLRD
VSAIATLHQTNECQVLLCSSYDGSIYKAGPALTGTPCGNHQWCIGGKCVE
RPKWSKWKYGPCKSGCLQSSLGIRTLQRNCLSGSDCIGRTQKSQLCDDNS
YCERKSAQRTITFISRKSRTIFADRQCKGFARTTEFQLRSNGGKAGAIIK
HVKSDPKRACIIYCRSRNKGWISPSSPNKDDFYFPEGTWCNYDDQTGQHY
YCINHRCVPEKNRKKKSLTT

mRNA from alignment at LSalAtl2s194:749034..753913+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003560-699407 ID=EMLSAT00000003560-699407|Name=EMLSAT00000003560|organism=Lepeophtheirus salmonis|type=mRNA|length=4880bp|location=Sequence derived from alignment at LSalAtl2s194:749034..753913+ (Lepeophtheirus salmonis)
CAATTTTGAGACACGAAATGAAAGTTTATCCATTGATAAGTACACAATAC
CTCATATTCCTCCTCAACGGAAATGTTGTCTGGAGTAAAAGAGAAGAGCT
TGGAGTCGTAAGACGCTTGGCATCATTTCGTGGAGAGGATGATAAAGTAC
AATTTTCGATTTCCGCCTTTGGAGAGGAAATGTTGTTTAATTTCACGCGG
AATAAAGACCTGATCCCTCCTGGATTTAAGATTAAAACAATGTAAGTACA
CAACACAGCTTGTATATTTCTTTAAGATACCCGATTATTAAAACAATATC
TCTTCTTGCATAAATCTTATAGTTATAAGCAAAAACAGATATTTTATTTT
ATTTTTTTAAATAATAATGCTATCAATCTATTTTCAGTCCCTTCCCCTGA
GGGAAGGATATTTTTCCCCAAGATTTCCTGTTAAATGCACCGTCCATCTT
CCCTTCGATCCTGTGACGTCTTAATTTCCCTATATCAGAGAATCATCCCC
AAAATATAATGNNTTCTATTCCCATACTTGACAGTAGGGAGGGTGTTCTT
AGGGTTATCACTTTTCTTCCTTTAAATACTTTTTTTTTTGTTCATATAAT
GTCTCTCACTGTTAWTAAACCTACAATTAAAATAATAGATACCTCTTTTC
TTTGTCAGTTGCTAACTATACTACAAAATATAGATCTTGTACGCCTGTCG
TCTAAAACTCACATATAATACTCTTATTTAAGTCTTAGAAAGTGAAAATG
ATAACTAAAATTTTCAATCATAGTAGTTTTGGCCTTTAGAGCCATTTTTT
ATCACATTTTTAAAATATAATTTTGATTTAGAGCCATATTTCGAAGTGAA
ACAACTCTATAAATGAAAATTAGATATAATAACAACTGATAAAGTTTTCC
AGCATTCGAAAGATTAGTTATCTTTTATAAAGTTCCTTAAAAATGGGTTT
AACCATACAAAAATCAAGTAAAATGAAGAATTTTATTTGAAGGTTTTTTT
CAGATATTTTATATTATAGCTGAAACTAACCAAAAAACCTTAAACAACTT
AAAAAATAATTTAAATCAACTTTTCTTTATCAAAAAATTTTGATACATAT
TCTTGTAAAATGTTTGTAATATTAACGATATCAGGTTGCGTGACTAAATG
TTCCGAAATTAAATATAATTAAGTCGATTATGTATTTGACTAATATATTT
TAGAGGCCAGGAGATTAACCCTAATTTGAATATGGTTAGTATCGAATGTA
TTTTATTAGTATTTATTATAGATTAAGCTATTTAATCGACTTATTTATAT
TTAGTTTCTGAACTTTTTACGCAAACTTTTCATGTCTTAAATAACAGTAA
TAAATGTAGGGGTTAGAAAATGCAACTACATCATAGTATAATCATTAGAA
ATTTCAGAATATTCCAAATCCAGGTGACCATACTAATATAAAAAAGTACT
ACCTGGTAATCTGCAAGATATTAGTGCTTTGATTAATTATATTTCCCTAT
CTTAAAAGTTCAAACTTATTAGCGAGTAAGGACAACTATAGTTTTTATAA
TTATCTCTGTCATCAGATATGTCGTCTATCAATGACTCCAGTATATACTT
TTCTTTTTGATTTACACCCATGATTATTTAGGAAATTTTCACATGCATAA
TAATCATACACTTAGTTCATGTTCAACCCCTTAGTTCCTAAATTCCCTTT
TGGGAACAACAATCCCTTAAAGACATTTCATAGTGTTGCGAGTAGGTCTG
AGTTTAATTTTCTTTAGATTTGGACCTTTATTTGGGTGCAGACTGCGGCC
TGAACCGTGAGCTGGAAATTAAATTTTAGATTGAAAAAAAAGTTAATTAC
TAAATTATTTTTCGTATGAAAGAGTTGATATTTTATTTTGGGCCAATCAA
WAACAAATTTTCMCMTCGTTATCCCCCCCCCCCCAAAAAAAAAAATACGA
AAAAAGTGCAAAATCAGTTTATATCAGTTGTTCAATTCTTTTTGGCGGCT
ATAAAATAACTATTCAATCGTTCCTGGAAATTGTTTATTTTCAGAAGACT
GATAGGGCGAAAGCTGACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTGTTACTCAGGTAT
CACCGTGTTTTAATATGATACCGTTTTCTATACCAATTTGGTCTTTATTA
CTTATATAACTTTGTCAGACAGAACCTCCTCGCAAGTATTTTATAATATT
TTATACAAACTATAATTATCAATCACAGACATATAGGCACCTACGTAGAT
ATAATCAAAAATAGGATCGTCAATATATGTTTATGTACATAAATGCTTAT
ATGATATTCTTATCATTTGAATGATCATTGATTTATTTTCAGTATAGTTT
GATGAATAACTAATTGGCAGTCACGTTTCCGCAATAAAATATCAATCTCT
AGCACAATTATTATTTGAAGATTTACAAGTGCACAACATATTTGTACGTA
TTTAATTCAAAAAAATATTGGTCTCAGGAAACAATCAATACCATATTTGG
TCCATTTAAAATGATGCATTTTGGAGGGTCTAACATGAATATTAAAAACC
ATGGAAATTATCTTCACATATTTATAAATCTAAAAAAAAATCTAACAATG
TATCTGTATTTTACCAAAAAAAAACAACAATAAAACGCTTAACCTTTTTA
ATATTCTAAATGAAAAATATATTAAATGATAATCATTGTTGTAAAATATA
TTTATTTCATAGATTAAGATCCTACAAAGCCAAAGAAGAGGAAGCCCTTC
GGAGCCATTTTATATATGAAAGCTCCTCTTTTATTGCATCAATTAGTGAT
TATGGAAATAATGAGATATATGGTTTTATTAGTGGTCAAGGAAAGACAAT
TGAAATTAATCCATTGAGTAAAAATCTACTCTCAGCTGTTAGAAGTAATC
CAAATGCCTTCGGCTTTGACAGTCCAGATACGAGTGAAATCTTTCTTATG
AAACAAATCAAACTCCCTTCCTTATCAAATGATGAACACTATTTCATTGA
CCCAAATGAAATCCAAGATCGATATAGACATTTAGATAGGCGCTATTCTA
ACAAGATGCAGAATCTTACGATTGAACTCGCAGTATTTGTTGATTATGAA
GCATTCAATGGACTTTTAGACCTTTACAACTCTGCTAATAAAGCTTTCCA
TGTGTTACTGGCCCATATGAATCAAGTGCATGCCTTATTCAAGATGAGAA
GTCTTCAAACTAAAGTTGACATCAGTTTAACCAAACTTGAAGTACTGGAT
AGAGAATTTTTCCCAAAATATATTGGAGAGAGGAAGCATTTATTAGAATC
ATTTTGCAAGTGAGTGGAAATTTTTGTACTTACATTTTATTTATACGTTT
AACATATATTTTTTCTATCCCTAATACTCACTAAAAAGCTATCAATACAA
ACTCAATAATCCGAAGGATGATAATCCTAATCATTGGGATTTAGCGGTAT
TACTGACTGGTCTTAATCTTTGGACTGAATCATCAACCAGAGGAAGAGAC
TATTCAACTTTGGGTATAGCACCGACAAATGGAATATGCACACAAACTTA
TTCTTGTGCAGTAGCCGAATTAAGAGGTAGAATTAAGCAAGAAGATCAAA
TGCCAATATCTTCCGGGTTTGGATCATCTTACATAATGGCACATGAGGTA
AATACCTACAAATCTATGCCAAAAATAAGCTGAATGTACTCATTTATAAA
AACTATAGATTGGACATACACTAGGTCTGTCTCATGACGGATCTGATGAT
GAATGTAGCAAAGATGGATTTTTAATGAGCTCAACAAGAGATCGTCGAGG
AGAAGCTCAATGGTCTGAATGTTCAGCAAGAAAGTTAAAAATATTGAATA
AGGATCTTCAATGTTTATATGACTCTCCTGGATTTTCCAGAGTTAACTTG
GAGCAAAAAACTAAATACAAGGGTATACCAGGGTTTTTCATCAAGAGTGA
CAAGCAGTGTCAGCTGTATCTTAGAGATGTCTCTGCAATAGCAACTCTCC
ATCAAACGAATGAGTGTCAAGTATTGTTATGCTCCAGTTATGACGGATCC
ATTTATAAGGCGGGGCCAGCATTAACGGGAACACCTTGTGGAAATCATCA
ATGGTGCATAGGTGGAAAATGTGTTGAGCGACCAAAATGGTCGAAATGGA
AGTATGGACCATGCAAATCAGGTTGTTTACAAAGTTCCTTGGGTATTAGA
ACATTACAAAGAAATTGTTTGAGTGGTTCTGATTGTATTGGACGCACTCA
AAAATCACAACTGTGTGATGACAATAGTTACTGCGAAAGAAAATCTGCTC
AAAGAACAATTACATTCATTTCAAGAAAAAGTCGTACAATTTTTGCTGAT
AGGCAATGCAAAGGTTTTGCAAGAACCACTGAGTTTCAATTACGATCCAA
CGGGGGAAAAGCAGGCGCAATAATTAAGCATGTTAAATCAGACCCTAAAA
GAGCGTGTATTATTTACTGCAGATCACGTAACAAGGGGTGGATTTCTCCT
TCTTCACCAAATAAAGATGACTTTTACTTTCCCGAGGGAACTTGGTGCAA
CTATGATGATCAAACAGGTCAACACTATTACTGTATAAATCATCGTTGTG
TTCCAGAAAAAAATAGGAAGAAAAAAAGTTTGACAACGTAATTTTTTGTA
AAACTGGACTTTGACGAAAAATGAATGAAAAATGATAATTTCAAAATATA
GATAAAACCGAGTCATTAATATGTACAATGCAGTCTAAATCAACAAATTT
TCAAATAAAAGTAGAAAAATCATAAATTTG

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