EMLSAT00000003623, EMLSAT00000003623-699470 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003623
Unique Name	EMLSAT00000003623-699470
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1989	supercontig	LSalAtl2s1989:9686..15224 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003623 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003623	EMLSAG00000003623-686389	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000015767	EMLSAE00000015767-724695	Lepeophtheirus salmonis	exon
EMLSAE00000015768	EMLSAE00000015768-724696	Lepeophtheirus salmonis	exon
EMLSAE00000015769	EMLSAE00000015769-724697	Lepeophtheirus salmonis	exon
EMLSAE00000015770	EMLSAE00000015770-724698	Lepeophtheirus salmonis	exon
EMLSAE00000015771	EMLSAE00000015771-724699	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto768873	auto768873	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003623	EMLSAP00000003623	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1989:9686..15224+

protein sequence of EMLSAP00000003623

>EMLSAP00000003623 ID=EMLSAP00000003623|Name=EMLSAP00000003623|organism=Lepeophtheirus salmonis|type=polypeptide|length=343bp
MARATSRHYSQVILGFVDEQINDKYESSCDYTTNKIGGSPNWMPNRVPSN
LELSCPLCKSFLSLICQVYAPLENSSLHRTLYLFACLRKTCWNSNQSWKC
FRSEIEDTFPPSYTQVTEPSNVTVSNTSFQTTDWAQDADDWGSEEDENGN
NNNTSSPPANLMKCLSINDNYTCKDSYDLNEYDDEEEDEEEEEVSTTSTS
DFSTSNDPNANDLRATAVIEEDNEGETNVVIIDSPNEAVQAAATTTIPSL
FFPTDNVNPGVQSESSVFLPYFLAVEEEYELEEVVSDHERRLLWEFRSKE
SMEDEEENKVLLNSGACSRGGGGEMDVYEKAVPRHGDIFYHKY

mRNA from alignment at LSalAtl2s1989:9686..15224+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003623-699470 ID=EMLSAT00000003623-699470|Name=EMLSAT00000003623|organism=Lepeophtheirus salmonis|type=mRNA|length=5539bp|location=Sequence derived from alignment at LSalAtl2s1989:9686..15224+ (Lepeophtheirus salmonis)
TTTGCACGCACACACTACAAAAATTTGACGAGATATAAAAAAAATAAAAA
TATACTGAATTAAATTATCTTAATAACTTTATTAGGATAATAGTTTTCAA
GATTTCAAAAATCTAATATGAGATTCAATTGTTGATAAAATGGCGAGAGC
AACGTCAAGACATTATTCCCAAGTCATTTTAGGATTTGTGGACGAGCAAA
TTAACGATAAATATGAGAGTTCATGCGACTACACAACCAATAAAATCGGT
GGCTCTCCGGTAAGTTGAGCATTAATACAAGGGAACTAACAATAAGTTTG
ACAATTTTTTAATTTTCATAATTATTTGACCACATTTCTTACTTGATTTG
AGAAATTCCTATAAATTAACAATGTATGTACAAAGCTTTTATGCATTGAA
AATGCATATTGGCAATTGGAATCCTCCTCTTAATATGTTGCATCGTAGTA
AAATGTCCTTTTTCAGAATTGGATGCCTAACAGAGTCCCCAGCAACCTCG
AACTCTCTTGTCCACTTTGTAAATCCTTCTTATCACTCATTTGTCAAGTC
TATGCACCTCTAGAAAATTCTTCGTTACACCGAACGCTTTACTTATTCGC
ATGCTTGCGCAAAACATGTTGGAACTCAAATCAAAGGTACGTTAAAGGAC
CACTCATAGTAATACTAATCATTACATATAATTACTATTATTAGTCAATC
TAAATGATGTCATGTTTTTCAGTTGGAAATGCTTTCGAAGTGAGATTGAA
GACACTTTTCCACCCAGCTATACTCAAGTTACAGAACCAAGTAATGTCAC
GGTCAGTAATACATCTTTTCAAACAACGGATTGGGCTCAAGATGCGGATG
ATTGGGGGAGTGAAGAGGATGAAAATGGAAACAATAATAACACCTCTTCA
CCTCCAGCGAATTTAATGAAATGTCTATCTATAAATGATAATTATACTTG
TAAGGATTCATATGATTTGAACGAATATGATGACGAAGAAGAGGATGAAG
AGGAAGAAGAAGTGTCCACGACAAGTACGAGTGATTTTTCGACATCCAAC
GATCCCAATGCAAATGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAAGATGATTCAATAGTTGACCTAATCCGCTATAAGAACAAAT
ATCTTGACAACTCTCCTTTAATTAATTGAACAAATACACTAAAAGGAGAT
ACAGTGTTTAAAGAAGAGAAGAAGTCAATGAATGATTAAAATTCAATGGA
CAATGCGAATGAATTAATGGTTTATATCGAATCAAGTCCTGATTGATTGA
TACTCCTCTATCCCGAGGTTGTCTCTAACCTTCTAATTATCAAAGTGTGT
TTTTCATTGGAGTAGTCTAATAGATAATTAGACAGTATTGGAAAATGAAT
CATCTTATTATTTTTGTAGGCAAAGTGACTTAGAAACGTTTCACATTAGG
TACCTTTCTTTTGTTGTCTATTCTTGTAAATTGACTTTGCCTGATTAATT
AATTAGTATCAATGTTATTGATTGTTTCTTTCACGAATTTATTCATAGTT
GAGAGCCACTGCGGTAATTGAAGAAGATAACGAAGGTGAGACAAACGTTG
TGATAATTGATTCMCCCAACGAAGCTGTTCAAGCGGCTGCTACAACTACG
ATTCCCTCCTTATTTTTCCCCACGGATAATGTGAATCCCGGGGTACAATC
TGAGTCCTCTGTTTTTCTACCTTATTTTCTTGCTGTTGAAGAGGAATACG
AGCTTGAAGAAGTCGTTTCTGATCACGAGCGACGATTATTATGGGAATTT
CGAAGTAAGGAATCTATGGAAGATGAAGAAGAAAATAAAGTCTTGCTTAA
TAGTGGTGCATGTTCAAGAGGGGGAGGAGGTGAGATGGACGTCTATGAAA
AGGCTGTTCCAAGGCACGGAGATATCTTCTATCACAAGTTTCTCACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATCATTATTMTCAGTTTGATGCACGA
TCTCATATATTAAATATCCAATTATTCCCTGGCTGCATAGATTGATCTTT
ATTCTTTAAATAGGCTGCMTTGATCATAATCTTGCTTTGTCTCCAGTACC
ATCTTTTGTGTTTAATTGAATTGAAGATCTCATTTTCTTTTTCAAACTCT
TAAAACAGGTACATCATGAGATCTCATAGGCACTAATTTTAACCTTCAAC
ATTATTTATTTAATGCTATTGATGTACCAATGAATAAAACTGTATAAAAA
CTGAATACATCTCTCTTACGAGGTATATGATTATATTTTTAATTATGCGA
TTGAATATCTCCGTGGGCTTAATTATATATTGACATATTCTACCAGGTAA
ATTTGCTGTATGCTATTTACTATTCACATCCAAAATTATAAACTCACATT
GTCTAACTTATTTTTGTGGAAATGTAATGAATGATATCTCCTGACAAGAG
ATAACTAAAAAACTATAGTGCTCCTTGCTCGATAATATACCTTTGAATTG
TTGTCAAAATACAGCGAAATAATTAAGTAACTCCAACAAATATTTATTTT
TGAGAAAAAAGTTAGAATGACCTTTTTTAAAGCACCCATAATTAATAGAA
TCTTCATCCCATAACTGGATTTGTGAAAATTGTCTGAATCCTTCTGAATG
TAAATTAAAACACATCTCGTATGTTGGCAAGTTTGATAGACTGTTGATAA
AGATCACTAATTAAACTATAGTGATCCTTCCTTGATAATATACGTTTTGA
ATTTTCAAAAYGGGAATACACATTTNNNNNNNTTTCAAAATGGGAATACA
CATTTCAATAGAAAACCTACGTTTACTCATACAAAATTACTGAAGTACTA
AAAATAGGTAAAACATAATTAAACATGTCTTGCNGGTTACGAGATTGTAC
TTTTTTTTAAATATATGTTCACAAGAAGTTGSACAATTCTCACATTCCTG
AACATAACTACAGGAATATGAAGAAGCAATGGCCCATTTAAATCATTTGA
TGTTATGGAGATCACATATTCACGGTAATATTACATAATTGTACAATTTG
AACAAGAAAGCTTTAATTCAAAAACCTAAGTCGCATATCATTAATGTATG
GGCACACAATGTTTAATCTATTAACGGAGTCTTTCACGCTTTCTATTAAT
TAAAACCATTTCATAGTTACAAATGTTTATATAGGTATTTTTCAATAACC
TTGGTGATTTATTTTCCATAATCATTTCATAGGTGATTTATTTTTCTGAA
GTCCTGTTTTTAAGGAGGAACATTCCAGACCATGGATTTGAAATTTATTG
CCTGTTTTATGTAATCATCTATCTTATAATAGATATTAG

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