EMLSAT00000003679, EMLSAT00000003679-699526 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003679
Unique Name	EMLSAT00000003679-699526
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s19	supercontig	LSalAtl2s19:579759..584120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003679 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003679	EMLSAG00000003679-686445	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000016010	EMLSAE00000016010-724938	Lepeophtheirus salmonis	exon
EMLSAE00000016011	EMLSAE00000016011-724939	Lepeophtheirus salmonis	exon
EMLSAE00000016012	EMLSAE00000016012-724940	Lepeophtheirus salmonis	exon
EMLSAE00000016013	EMLSAE00000016013-724941	Lepeophtheirus salmonis	exon
EMLSAE00000016014	EMLSAE00000016014-724942	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto778714	auto778714	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003679	EMLSAP00000003679	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s19:579759..584120+

protein sequence of EMLSAP00000003679

>EMLSAP00000003679 ID=EMLSAP00000003679|Name=EMLSAP00000003679|organism=Lepeophtheirus salmonis|type=polypeptide|length=508bp
YVSRIQELESHLISYKEDIKSRPLIEDQKESDHSVLEEYDVSSNQANTSI
APIQATDVSVKLNFQLIQVLDQLHEKEAFNKKLESEIESLHGKINVQRHQ
MGLLYEEHREKKNKWELEMKKMEVEHTEQADEMKKLLIKVEEYEKDLDND
QVRSETLKKIVILRSNEAMMVRRYRAMEDSEKLLREEVKKLKDDSFKMEI
EIVRKLGSLQRYKEIASFKIEALQKSISKSVPIAELDSLNCQYSDLLLKY
KELVQTNQTIAAQSQELNSDNEMPQQSLVQECNKLKNEVSLSQEKINSLE
KVIESFNKSIKVGGEINERQRADCLDRQNKLLQSQISELGNRNNDLEIKF
KEISNLYTELQKNERYLQDQILNNVTKEEYDELNDKLKKLELSEAKLNNE
RDELKEISDIATNQISVLENKKKNENIELESLRHQVIDLQTQTDEKSIIG
KLHRQVILLQLRESEAAIKIKGMENQVRKSDLQLFRQSKKCEEYENIIFK
VYFDLYMI

mRNA from alignment at LSalAtl2s19:579759..584120+

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003679-699526 ID=EMLSAT00000003679-699526|Name=EMLSAT00000003679|organism=Lepeophtheirus salmonis|type=mRNA|length=4362bp|location=Sequence derived from alignment at LSalAtl2s19:579759..584120+ (Lepeophtheirus salmonis)
TATGTGAGTCGCATCCAGGAGCTCGAATCTCATCTAATCTCCTATAAAGA
AGATATTAAATCAAGACCTCTCATCGAGGATCAAAAAGAGTCTGATCATT
CTGTATTAGAGGAGTATGATGTTTCATCAAACCAAGCAAATACATCAATT
GCCCCTATTCAGGCAACGGATGTATCAGTCAAACTAAATTTCCAACTTAT
TCAGGTACATAAATAAGGGTTGGAGCCCTTCACGCTTGTTCCATTAATTC
GTTCATTTAGGGTATTCCATAATTTTTTCAGTTCATTTTTTTAAGAACAA
AACGACGAACTTAATTTTTGTCTCAATTTATTTTACTTCAAATAATATTT
TTTCCTCTAGAGATGTACATTTTTGGTTATCACCGATAAAGACACTTAAT
CATGAGGTATAAATTTTTTACTTCCCATTACCGAATTCACCTTGTGAATT
CAATTTAAGGGATGAATTCATGGATGTTACGTAGTTATTTATAGAGCAAC
TCATGATACATTTAGTACCTCTAGCGGACAAAAAAAAATTCTCGTAGCCA
ACTAAATTTAGATTGTAAAAAAAATGTTCTCATTTCGCTACTTGGTTTTA
GATTTGGTCCTGGAGTAAAATATGCATTTGAAAAATAATTTAAAAAGTAG
TGAAGAAATGATTGACATTCAAATAATTATTTGTTCAAGCTCTGAAATGA
ACGAAAAGCAGGAAAGGCACTCAGTTTCGGCTCACTATTCAAGCCTGTTA
TAAATACTAATAATCAGACAATATTTTTACTTCATTTTAAACCTAAAAAT
ATGATTTTATGCTATTTAAAGGTATTAGATCAGCTCCATGAAAAGGAGGC
GTTTAATAAGAAATTGGAATCCGAGATTGAGAGTCTTCATGGCAAAATAA
ATGTGCAACGACACCAAATGGGACTTTTGTATGAAGAACATCGAGAGAAG
AAGAACAAATGGGAATTAGAGATGAAAAAAATGGAAGTTGAGCACACAGA
GCAAGCTGATGAAATGAAAAAGCTTCTCATTAAAGTCGAAGAATACGAAA
AGGACCTAGATAATGATCAAGTCCGATCCGAAACTCTAAAAAAGATTGTT
ATTTTACGCTCAAATGAAGCAATGATGGTGAGAAGATATAGGGCAATGGA
GGATAGCGAAAAGCTCTTGAGGGAAGAAGTAAAAAAACTAAAAGATGATT
CATTTAAAATGGAAATTGAGATTGTTCGTAAATTGGGTAGTCTTCAGAGA
TATAAAGAAATAGCCTCCTTTAAAATTGAAGGTAAACATTTTTGCATTTA
TTCAAGTCAGTTTATATACTTATTCTTTTAAAACAGCTCTCCAAAAATCC
ATCAGCAAATCCGTTCCAATAGCTGAATTGGACTCCCTTAATTGCCAATA
TTCGGATTTACTTTTAAAATACAAGGAATTAGTTCAAACAAATCAGACAA
TTGCTGCTCAGAGTCAAGAATTGAACTCTGATAATGAAATGCCCCAACAG
TCTCTGGTTCAAGAATGTAACAAGTTGAAAAACGAAGTCTCTTTATCGCA
GGAAAAAATTAATTCACTCGAAAAAGTGATTGAGTCATTCAATAAGTCGA
TCAAAGTCGGCGGGTCAGAGGAGGAATTTTCAGCAAATCAATATTCGAAG
CAGGTAAATTTAACAATCACTTAGGGAGAAAGTGGGGCTAGTTCGTGCAA
ATGTCATTTTTTGGCATGTATTAATCAGATAGTAGAAGGGATTGTGAGAT
CTGAGTGGGTTCCCCGTCTTTATTGTTTTGCCCTACTAAGGATAACAATC
TTGCCCACCTTGGTAATTACTCATAGACTTCCTACACTTATATCAAGTGC
TTGAGCACATCTCGTAGAAACCTGCTAATAAGTGTGCCCAGTGAACCAAC
TAGCCCCGCTCTTGTTATATTATAAAGTTATTTCATTTTCATAAAATTAA
ACTTTCAGATATCCGCTCTCGAAATGAGAGAAATCAATGAAAGACAAAGA
GCAGACTGTTTAGATCGGCAGAATAAACTTCTCCAGTCTCAAATATCCGA
ATTAGGGAATAGAAATAACGATTTGGAGATTAAATTTAAAGAAATTTCGA
ATCTATATACGGAACTGCAAAAGAATGAAAGATACCTTCAGGATCAAATC
CTTAACAATGTCACCAAAGAGGAATATGACGAACTCAACGATAAATTAAA
AGTGAGGATCTTTGTCTAATTTTTTTATTACGTTTTACAAAATCGGTCTT
GGGCCATTACAACCTATTTAACATCAGAAAGMCCGCCGTTTTATTAGGCA
CTGCACTTGATGAAATAAAATACATAATTTTTAGAAAATAAAATAAAGGT
TTTTTTTTACAAATTCATATTCAATGGCCTTTAGAAAAAGATATTTCTTA
TTTTTCAAAAGTGACCTTTCTTTTATTTGATTATGTCTAAATTAGTTTCA
AATTTTCAGGAAAGAAAACTGAAAAGAGTTTCTTTTTTGGAGAGGGAAAA
ACTTTGAAAATTTTGACAGAATGGTTTTAAACCAAAAAATAAAAAAATAT
TTTTTTTATAACAATGAATAGTAATCATTTTAAATTGCAAATTTTCTTTT
ATTTTTTGCCAAAAAACGCTGTCTTTTCGACAAATTTATGAACGAGATAT
TATTTAGCACGGTGTAATACTCTACCCATAGTCACGGCCTGTTCAGACCC
TACTTACTTTAAATTGATCCTAGGCTTATTTACTATCATTATCTCTGTCC
AAATTGGAATTTGGGGTCATTGGAATCTTTTGCACATAGTGCTGTGTAGG
TCCAGTCAAGTCTTAGAACCGCTCCTATCGGTCCTTAGGACTGACAGTCC
TTGGATCCGATACTAAACTGTCAGTCCCTTCAATTTCCCCAAAAATGTCG
ATGGTATATTAAGTTATATAAGATATATGAGAGATTTATTAAGATCACTA
CATATATCTTGCCAAAAATATTCCTATTTTCAATATAATACGATCATATT
ATATTTTTACTTAGTTATACCGGGTGCGGCAAAAAAATCTTTACACTTTC
AATATAGAACTTTATCAAGATGTATTTCAGTAACCAGTTGTAATAGGGTA
TACCCATAAAATAAAAATAACTAATTTCATTTCTTGGCTACCCTAATCAT
CGATGTAGCCTCCTTGGCAGTAATGATGGCTTCCRGGCGGCCACGGAAGG
CWTTKTAGCCATTGCCGCTGTAGTCCTTAGACATGGCATCCCATTGTTGG
TTGGCAGTGTCCTTGAGGTTGTTGATATTTGGGTAACAGACGGTGAAAGC
CTTGGACTCAACATGCACCCAAAAGTGAAGTCCAATGGGTTGGCATCTGG
TGAGTCGGGGGCCACATTTTCTTTGGCCAGAAAGGCCGTCCAACCACTTC
TAGGCCTATTTGGCGTACCATCCTACCAGAATACCACGTTCATGTCCGGA
TAGTTGGTCTGGGACCCAAGATAACATGGCAATCTCCGTTAGTTTCTTGC
TAGCGTCCAAAAGTGTGCAGACCGAAATTCGTTGGTCACGTTTAGATAAA
ATCTTCTCAGCTTATAAGGCACTTAGGAAGATCTAGTTTTTTTTGTTTAT
TTATTTACTTTTTTTAGTATTTGACCAGAACAATTTTACTACGTTTACAA
AAACCTTGATTTTTGTAGCAAAAATGAATTCATATGATTTTTTCGCCGCA
CTCGGTACATTATATTATAATAATGTAATTATTAAAAAAAGGATAAATAC
TCTTAATCACGTTACGAGGGATCGATTTAACTTCAGTAAGGGCCGACAAG
TGGGAGGGGACGGCGATCCCGTCCTATATAAGAACAGACACAGGACTACT
TCAGCGTAGGGACCCAGAATAATTAAGGCCGGCATTGACATTTTTTATAA
TATAACATGATTATAATATTTTTTTAGAAGTTGGAATTGAGCGAAGCCAA
ATTGAATAACGAAAGGGACGAGTTGAAAGAAATATCTGATATTGCAACCA
ATCAAATATCAGTTTTAGAGAATAAAAAGAAAAACGAAAACATAGAACTG
GAGTCCTTAAGACATCAAGTAATTGATCTACAAACTCAAACCGATGAGAA
ATCCATTATCGGGAAGTTACATCGACAAGTTATTTTATTGCAATTAAGGG
AGAGTGAGGCTGCAATAAAGATTAAAGGAATGGAGAATCAAGTAAGAAAA
AGCGACCTCCAGTTATTTCGACAAAGCAAAAAATGTGAAGAGTATGAAAA
TATCATATTTAAGGTATATTTTGATTTGTACATGATTTGATTTTTACATG
GTTTGGATCTGGTCAGATATTTTCTGTTGATTCATTATTTTCTGAATTTT
TTTTCATTCAGG

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