EMLSAT00000003927, EMLSAT00000003927-699774 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003927
Unique Name	EMLSAT00000003927-699774
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s211	supercontig	LSalAtl2s211:13609..18241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003927 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003927	EMLSAG00000003927-686693	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000017029	EMLSAE00000017029-725957	Lepeophtheirus salmonis	exon
EMLSAE00000017030	EMLSAE00000017030-725958	Lepeophtheirus salmonis	exon
EMLSAE00000017031	EMLSAE00000017031-725959	Lepeophtheirus salmonis	exon
EMLSAE00000017032	EMLSAE00000017032-725960	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto769217	auto769217	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003927	EMLSAP00000003927	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s211:13609..18241+

protein sequence of EMLSAP00000003927

>EMLSAP00000003927 ID=EMLSAP00000003927|Name=EMLSAP00000003927|organism=Lepeophtheirus salmonis|type=polypeptide|length=644bp
MTTLQFVPFDSRVNPDFWLCLSKIKLEVLKLKDEAYPVVGRVELTNRGKD
IPPILDMDRFSFDKDQSNDVTSIFSQGFICNQNTIEKFKNIDKSELLENT
CGQQLRESIMNGSALDNPSQHLGSFLILTFADLKKYNFYFWFSFPGFQMP
SELRIVSCEPAPDFTIPKESFATYFAIINGNYRENVKEAVQIFNETDHDI
IFGYLDSCTYENNPGWSLRNYLSLILYHSPGKKVFKILSHRRRTESKLMI
LDYQSDVDKFELGSVVGWEKNENGKLGPRVAAMKNAMDPKVLAESSVDLN
LKLMKWRVAPDLDLDTLSKLKVLLLGSGTLGCNVARVCLGWGIRHITFVD
NSRVSFSNPARQTLFDFNDCLEGGQHKAKCASEKLKSIFPGVTSNWHDVF
IPMPGHPISDSNLEESKKNFEELDKLIQSHDVVFLLTDSRESRWLPTVMG
AHYEKIVMNAALGFDTFLVMRHGMSPKKYLVSGNNDPQIPGDSLGCYFCN
DVVAPGDSLKDRTLDQQCTVTRPGMSFQAAAIVVELAVSMIQHKKKGFAP
AGTQDSESVLGLVPHSIRGSMNTFSQFCPTTSAFDRCTACSHIVLKEFAE
NRFQFIQKVCNSSSYIEDITGLSTLLSGVNLDDIVALNSDSEEE

mRNA from alignment at LSalAtl2s211:13609..18241+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003927-699774 ID=EMLSAT00000003927-699774|Name=EMLSAT00000003927|organism=Lepeophtheirus salmonis|type=mRNA|length=4633bp|location=Sequence derived from alignment at LSalAtl2s211:13609..18241+ (Lepeophtheirus salmonis)
GAATAACAGAAACAGAGATAAAGAGAAAGAATTAATCATTTAATTTTGAG
ATTAGAAAAATCCAATCTGAATTAGTAGCTGAATTTCTTTTCTAATTCTT
GCCTTTTGAATGCTCGTTGATCACTGAGGGGTGTATGTAGATTGTACTAA
GCTAGTAGTGACCTGTAAGGAGCACTCTGAGTGTGGAATGTTAGTATGGG
ATCTGAGCAGAGTCAACTGAGAAGCAAATCCAAAGATGGGGATGGATCCA
ATCGTGCTTCGAGCCCACTACGACAGGAATCTGTATCTTCGGAGGTGGAA
GCCCCTCCGCCTTATGTCCCTTACACTGTGGGCCGCCCTATTGGCTCAGA
ATACATTGCTCAAAATATATGTTCAAAGAAATCTCCGCCAAAGCGGACTT
GGATTGACAGCGACACCATGATCACACTTAATAACAGTCGGGACGAATAC
GACCAAGAGGACGAGGAGATTCGACGCCTGGAAAATGTCTCTTCCTTCTT
ACCCATTATGCGCGGGTCTTCTAGAGATCCAGATATACTGGAGCGCCTGG
ATGTTAGGGGATTTAATGCTCTTGTTCAAAGATACTCTAGTAAATCAGAC
ATATTAGTTTAGAAATATTTTAGTATAACATTAGTCAAAGTAAACCAATG
ACTACTCTTTAAGTTGTTAAGATCAATGCTATATTGGTAATTAGTAATAG
TTGTTGTATACTAATTGGAATGAGTTGTATCATTTTATTACACAGTGTAC
ATATCTGAAGTATCTCGATTTCAATTTTAGTCATTTCTTCACTTTTTAAG
AAGGAAACAAATTCAGAAAAACAATCCTCGAAAGAAAATTATTTTACGTC
AAATTTACNNGAAGGATTTCAGATAGGTTCATAYTGTTTGCGAAATCAAC
TAAATCGAATACAAATGTCTGATAATAATTAAAGTCCAAATTTGTCATCA
ATTTCATCTTTTTCAAGTACAAAATTAACGCTAATGTTAAGCTGATATTT
TGATTTATAATTTGTGTACAAGTTGCTACTTGAATTAGAAAATTGTAAAA
GTTGTAACCAAAAAGGGAGACAATTATTTTTAAATGAAGGATGTATAGTA
CTTGGGATGATGATTATGCAGTAATTTCAATGTTCCATTGATGATCAACA
TGAAATGATAGTATCCATGTATAGTTGGTAATTAAAATGGTCAATATTGT
TTAAAAAATAATGTATTTTCAGACGAAGAAATTACCTTATACAATTTGAA
CCTTGCATACAACATATATATTACCAACTATACATTGGTACTATCATGTC
ATTTTGATCTATTAAATTGACTTGGTTGCTATATATTTATGAGTAATATC
ATTGTGGGCATTATAACTTTATAATGTACCACTTAATACTTATATTTTTG
TCATTTGTGTTAAAACAGCTAAAAATTAAACCATTATTATATAAATCATT
CATTGAATATTCGCATAAAACTCATTCCAAGTACTGTAAACCTTCATTTA
AAATTTTTCATCACATTTTTGAGCTTCAACTTGTAAACAATATATATATC
AGAATTAACATATTATTATTTCAGCATATTTTAGTTGATTTGATTATTAA
AAGGATCTTTCAATGAAAAATCGTATATATTATAGCAAAACTGATCTAAT
TTATCAAATCCGGAGTTAATAAATATTGATGTAATTCTTAGAAGAAAAAA
AAACATTTCCCCCTCATTAAAAAAGATTAATTATTTTCACTACTTTTATA
AACTATTTTTAAAATGAGCATTAAAATTGAATCAACAAAAGTCTTTCTTT
CTTTATAAAGGAACTCCTGAGTTTCATCGCTTTTAATAATATGTTGATCT
TCGACACTGTATTGAAACGTTATATTTTGTTGAATTGACTAATGTTTTAT
ACGTACAATTGCACAGATATAATCATCTTTAATGTTTGATTTGTTTCCCC
CTCTAGATCATCTTCGTTATACATCTAAAATAATAAAAGACACACAGTCA
GAAATCAACAAAAGCATTAAAGAAACAGAAGCCCTAAGTGCCTCTGTCCT
AGATCAAATGAATAAAAACTCATCATCCTATTCTAAATATGCGGAAAAAA
TTAGCTAAAGCATCTGACATGTCTCGAGCATTAAACAAGTGTCATTCTAG
TCTGAACGAAAATATTGAGAGAATGGAAGTGTTGAATAATATGTTACCTA
TGGAGGAGCGTTTAGAGCCATTTGTTTGGACCACNATTTTTAGTTGTTTT
TTAATAATATATTTTTTAATATATTCTCATATCTCGTCATTCCTGAGTTA
ACTCATTAATTAATTAATATTATATATTTTTTTGATACCCTATGGTATAT
GTATAAACATATATTTATAGAAGAATGACAACACTACAGTTTGTTCCATT
TGATTCTCGAGTGAATCCGGATTTTTGGTTATGCCTCTCCAAAATCAAAC
TTGAGGTTCTCAAATTGAAAGATGAAGCCTATCCTGTTGTTGGTCGCGTA
GAACTCACAAATCGGGGGAAAGATATACCTCCGATTCTAGATATGGATCG
TTTCTCCTTTGATAAGGATCAATCCAACGATGTAACTTCGATATTTTCTC
AGGGATTTATTTGCAATCAAGTATTTAATATCATTTTATTTTTCTAGTTT
CAATAAGCACCACCTGTTAAACTGCCTCCCCCCCTTTCTTTCAGAATACA
ATAGAAAAATTCAAGAATATCGATAAATCTGAATTATTAGAAAATACCTG
TGGTCAGCAACTACGTGAAAGTATCATGAACGGATCAGCTCTTGATAATC
CATCCCAACACTTGGGCTCGTTTCTAATATTGACTTTTGCTGACTTAAAG
AAGTACAACTTTTATTTTTGGTTTTCATTCCCTGGATTTCAAATGCCTTC
TGAGCTAAGGATTGTTTCCTGTGAGCCAGCACCAGACTTTACCATTCCAA
AGGAAAGTTTTGCTACATATTTTGCGATAATCAATGGAAATTATAGGGAA
AATGTAAAAGAAGCAGTTCAAATCTTCAACGAAACGGACCACGACATTAT
TTTTGGTTACTTGGACTCATGCACTTATGAAAACAACCCGGGATGGTCCT
TGAGGAACTATTTATCTCTTATTCTATATCATTCTCCTGGAAAGAAGGTT
TTTAAGATTTTAAGTCATAGAAGAAGGACTGAATCCAAATTAATGATACT
AGACTACCAAAGCGATGTAGACAAATTTGAACTTGGATCTGTTGTTGGTT
GGGAAAAGAACGAAAATGGAAAACTGGGTCCTCGAGTAGCAGCTATGAAG
AATGCCATGGATCCTAAAGTCCTTGCAGAATCCTCTGTTGATCTTAATTT
GAAACTAATGAAGTGGAGAGTTGCACCAGATTTGGATTTGGATACACTTT
CAAAATTAAAAGTTCTATTGTTGGGATCTGGAACTCTTGGATGCAATGTT
GCACGTGTTTGTCTTGGTTGGGGAATCCGACACATTACTTTTGTTGACAA
TTCCAGAGTATCCTTTTCAAACCCTGCGAGACAAACCCTTTTTGACTTTA
ATGATTGTTTGGAGGGCGGGCAACATAAGGTTGATTAAAATATATATATT
TTTTTACTATAGAGATCGACTAAAATATACATATGTATTACAGGCTAAAT
GTGCCAGTGAAAAGCTAAAATCTATCTTCCCTGGAGTTACGTCTAATTGG
CATGATGTATTTATTCCAATGCCAGGACATCCAATCAGTGATTCCAACTT
GGAAGAGTCAAAGAAAAACTTTGAAGAACTAGACAAATTGATTCAGAGCC
ATGACGTTGTGTTTCTTTTGACTGATAGTCGTGAATCCCGTTGGCTTCCA
ACTGTTATGGGAGCACATTATGAGAAAATTGTGATGAATGCAGCTTTGGG
CTTTGATACATTCCTTGTAATGAGACATGGAATGTCTCCTAAAAAGTACT
TGGTAAGTGGAAATAATGATCCCCAAATCCCTGGGGATTCTCTTGGTTGT
TATTTTTGCAATGATGTTGTTGCGCCTGGGGATTCTCTCAAGGATAGAAC
TCTTGATCAACAATGTACTGTAACCCGACCAGGAATGTCTTTTCAAGCTG
CAGCAATCGTTGTAGAATTAGCTGTCTCGATGATTCAGCACAAAAAGAAG
GGATTTGCTCCTGCTGGAACCCAAGATTCAGAGAGTGTTCTAGGACTAGT
GCCTCATTCAATTAGAGGTTCCATGAATACATTTTCTCAATTCTGTCCAA
CGACTTCTGCGTTTGATCGTTGTACCGCATGTAGTCATATTGTTTTGAAA
GAATTTGCAGAAAACAGATTTCAGTTCATCCAAAAAGTCTGTAATTCCTC
CTCCTATATTGAAGACATTACGGGGCTTTCTACATTACTCTCTGGTGTCA
ATTTAGACGATATTGTGGCACTCAATTCTGATTCTGAAGAAGAATAATCA
TCTTTAGATGCATCTTTTGATATTTTGATTATTGCCTACCATTCGTTTAT
ACAAACAAAATAATTTTGCTATATATATATATACTTTGATTAATCTTCAA
TAAATTATGCAGAACTTATTTAAGTATCCTGTTTGAATATATATCCTAAA
ATGTAACAAAGTAAACTCAGGAAAGAAATTTAT

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