EMLSAT00000004070, EMLSAT00000004070-699917 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000004070
Unique NameEMLSAT00000004070-699917
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s216supercontigLSalAtl2s216:644490..649399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000004070 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000004070EMLSAG00000004070-686836Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000017673EMLSAE00000017673-726601Lepeophtheirus salmonisexon
EMLSAE00000017674EMLSAE00000017674-726602Lepeophtheirus salmonisexon
EMLSAE00000017675EMLSAE00000017675-726603Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto779089auto779089Lepeophtheirus salmonispolypeptide
EMLSAP00000004070EMLSAP00000004070Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000004070

>EMLSAP00000004070 ID=EMLSAP00000004070|Name=EMLSAP00000004070|organism=Lepeophtheirus salmonis|type=polypeptide|length=172bp
MSCATAPVMYQPXSPYNNSSPSATMPPQGFHSSPDRVPPSQQSGIVEDNN
NRSHLENKHHVQQVFKVEHLHSTPPQDLSSYQPNNVSNTSSCNNSQSSPP
TSRPPSHLNQHDEDSSDSTISAHRLSSNIVVFTHYVGNASSVVEDHFSRA
LSSYERDETSWLESNPSSDASL
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mRNA from alignment at LSalAtl2s216:644490..649399-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000004070-699917 ID=EMLSAT00000004070-699917|Name=EMLSAT00000004070|organism=Lepeophtheirus salmonis|type=mRNA|length=4910bp|location=Sequence derived from alignment at LSalAtl2s216:644490..649399- (Lepeophtheirus salmonis)
ATGAGCTGTGCTACCGCGCCAGTCATGTATCAACCCTKCTCTCCATACAA
TAATTCATCCCCTTCGGCCACCATGCCTCCTCAAGGATTTCATTCTTCCC
CAGACAGAGTACCTCCATCACAACAGAGTGGCATAGTTGAGGACAATAAT
AACAGATCTCATTTGGAGAATAAGGTGAGAGACAATCACAAAATATGTCT
ATGGTTAGCTGCCTGTATAGGTATTATATATATATATACTTGCAATCATA
GTATTACCTTTTTTTAAAAGACATGGAAAAATTCCTTAAATGTTTATTAG
TAAGACAACTATTTCCCAGAAATATAAAAAGGAATTCTATTTTTTTTACT
TTATCGATTGGTTTTTTTCGTCTTTTTGAGTAGTAGTAATAATTAACACA
AAAAACATTTTTCAAATATTTTGAAACCACTTCTTAAGGTATAACGTACT
TTTTAGATAGTTCTTTTTCAATCAGTGGCAGAAATAAATAATTAACGATG
AGGATCCTTCTCCAATTTCTCTGTCTCTTTTAGCATCATGTGCAACAAGT
ATTTAAAGTCGAACACCTTCATTCGACTCCTCCACAGGATTTAAGCTCAT
ATCAGCCTAACAATGTCTCAAATACCTCTTCATGCAATAATAGTCAATCC
TCGCCTCCAACATCCCGACCTCCAAGTCATTTAAATCAGCATGACGAAGA
TTCCTCAGACTCGACGATCTCTGCACATCGCCTCTCTTCCAACATTGTCG
TGTTTACACACTATGTAGGAAATGCCTCATCTGTCGTGGAGGATCACTTC
TCCAGAGCCCTGAGTTCCTATGAGAGGGATGAAACATCCTGTAAGTTACA
ACATATATACCTCTAAAATCTCTACATTATTCCATGAGTTTGCTAGAGTG
GAATCCACATAACGAAAAGGGTCAAGAGGGGCAGCTGCTTCCTTCATTTC
CGGTCATTCCTCTTCTCCCTTTATCCTTCCCCCCTCCTGTAACATGTACT
GAGGTTTTTGATCACCTTTGCTTCCTTTTTGCCTATATTTTTGTGCCCAA
TGCTGAAGGAAAAATCGTTTTTTTTTCTTCTATGTGTTATTTTTTGTTTG
AAACAAAACAAWAATTAAAAAAAAAAAAAAAAAAAGTACTCTTTWTTTTA
AGCCCCTCTTTCTCTCTATGTGAGACGATTTCTTCTTTTGATCATGAGCA
GTCCTGCTTAGAACGTGCACATTTGGTTACGTAGTAGTTAGTTCTTATAT
TTATCGATAATGTGTATGGAAATAGGACCTACATGGAAACACAGATGTGA
AGTGATAAATTAATGATTTTTTTCCCTCTCTTTTTTCCCTTAAAAATAAA
TAATATATTAATAATTTTTGTGTCTATTCTCACCTCCCGCAAAGGCTTTG
CATTTTAAAATCTACAACTTGAGACTTTTCGACCTTGGTGATAACTCGTC
TTAGTGCGATATACGTATGTAAATGATTGTGTTTTGTGTGAATGAATGAA
AAAGAATCCCCCTCCCCCCTAAAGAAGAATCATTCCTGCGGACGCCCCTA
CAGCTCTAAACTCCACTCCAGACTCTGAAGTACCTAAAAATGTCCCACAA
ATTTGAATACAAGGCCTATAATTTATCTAAATATTTGCCTATGTGTATAT
ATCAAACATTTTCATCACTGCAGAGCCCCTAAATATTTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCAACCTCAAAATGAGATGAAACATTATTAATAATAGATTTTCATT
ACTTTTAATGAGAATGGGATAAGTTGTTGATGTTATTTGTGCATCGATTT
GATTAAAATGACTAATAATTGATATCAGTAATCAGTGACACAGTAGATAT
AAATGTATAAGAAATAAAAATATGAAGGGCATATTTTAGAGTTTATTTTT
TCTATGAGTAAAATTGTTATAACAAGGATAGAGAAAACGGAGAGTCAACA
ATCGTGTAATGAATGTCGTAGAGAATTAAAATAACTTTTTTTATTAATGA
TTATTCTGATGACGTAAAACAAATAGATACATCCCCAAAAGACTGCTGTT
CTAATTCAATTCCCCCCTTTGGAATATAAGTCTGTATTTTACTTTAAAAT
AAACCCCTGGGTTGCTCAAAAAAAGGAGTAACTCCTAGTTCAATGTATAA
TTGGTAATAATTAAAATGACTGACGTGATAATTAAGTAAGAGATCTAGTT
GCATAAACTATGACCTCGTGGTATCTAAAAATAAAAGAAACCGAAAATTA
ACGACAATTTGGAAGGAGATCACCTATGATGTCATGACATTTAATTAAAT
TAGCTGTGAGTAGACATGAGATAAACACAAATCCCATATAGGAAAAACAT
CAAAGTAGTTATTAGGTTATAATTCATTGTTCTCTTTTCAAAAAAAAAAG
AAGTTCAGAATACCAAGGAGGCAAAAATATGCACGCGTCTAGGTCATATT
TTATACAGCTCTAGTAATATTGTAGTTAACTTTTACACGACATTCATGTA
TGTATATATATATATGTTTGAGTTCTTATTCGTGATGTTATGTTTGTTTA
AGAGAGACGAGCCAACTTTTTATTGACAGAGTTACATTTAAGTGACTCTA
AACTGTTATTGGTTACACTTACCTTTTGAGTCTTTTCTTTCTTTTTCTTT
TCAAAGTAAAGACAAGACAGGCGTATTAGATACAAAAACAAAGCAATAAT
GATAACTATAAAAAGTAATCCCCATTTCTGGATATATTATTATCTATATA
TGTATGTACTTGTCTTCACCCATTACAAAATTACTTTGTCAAACAGTCAT
AATATGTCTCTTTACGAATAATGGCACGGCTGTCCATTTGCGTTCATATT
CGGGAACAAAATTGGTTTTTGTGTCATACAGGCCTGGAGATTTTTCATTT
GATTAATTGGATTTTATAAAAATAGTTGCATTTTCTTAGAAAATAAACGA
AGGGTTTTTTTCTTTTTTTCAATTGACCTTTTTTGTAAAAAAAGGTCATT
CCTTTTTTAAATAAATTTTGTGCTTGATTCTCATACTTTGATATACATTT
GACCTGAGGTTATTAATTCTACTACATGTCGTCAATCAATCCTGCTCTCA
AGTATTTAAATAATTTATAACGAATGTAGCACATTAAACTACAAATACTT
AAATAGTGATTACAGTTAAATATTTGTGATTAATAGCTCATCTAAATGAT
CAAATGCAGGTCTCTTAAACAGACCCTCCAAAACAATAATGCCATTCAAA
TACTATCTCCAAACTATTTGAAACATATAAATCAGTTATTTGAGCTGTTT
TAATTGAGGATGCGTGATATATATATTGTAAATGCGTGAGTCTCACGCTA
ACTGCAGTAGATATAAGAGCCCTTTAATTAACTTATTAATTATTTTGATT
ATTTGTTTATTAATAGATAAACCCATGTCAGCTCGTAATTTGCCAGCCTC
ATTTTGGACAGCGCCCTCGGACTATACGCCKCCCTCTCCTCGTCACTCTG
CATCAGCGACAGCATGCAATNAATCAATCCAGCACTGTTCCATACGGTGA
CATATATCCTGAATCCATAACAGGAGCACTTCATCAATTAGCTGCAGACT
GGCAGTACCCCCATGCCTCAGTGGGACACACTCCTTCCTCCTCTTCTTAT
TCCTCCAATTATTCAAATTATGCTGCAAGGTTCCAGTCAGCCAATTATTG
GTCCCCTCGCCTAGTGGGCTCTTCATCAACCACCTCATCTGTCAAAAGCG
AATGGTCGCCTGAGCCCCCGTACTCTGACTTTTCTTCACATCCTCATCAT
CTGTCTCATCATCCATACCATCACTATTCCAACATAGCAGCTGTTGCTGC
TGTCGGKAAGTGCTGTCAATGAAGTAAAATGTTCTACCTAAATTACTACC
GGTACTTCCATACTTTCTTTAGTAATATGTATCTACCTATCCCTCCTTTT
AAATCCTACTTGGAACACTTTTCTGGGGTCGTTAGCCATTCCTACATAAA
TATGAAGGATTTTGTACAAATAATAACGCTTATTTGTGTGAGCAAATTGA
ATATTTTTTTACCATCAGATTGTGGATATATAATAGTGCTTGGATAAAAG
AGCTTTAAATTTTGTTGACTATTGAGGATAGATTATTTCTAAATTATAAT
TAAACAAGACATATTCATGGGGTAGATATCCACACAATAAGAATTCTAGT
AAAATTCGTTCGCAAATCCCCCAATTATGGAGACTTATATGATATTGCCA
GGGTTTATTTTTTAAAATAACGTAAGGACGCTGTAAGGCACCGGTTCGAA
CACCAATTAGTATCCCGGTACCTCTGTTATAGCTAAAGACACATACGCCG
TACACCTGCACCAAAACAAATCATCATCACGTAATTGATTGTCTCCAACT
CATGATCATGATTCCCCAATAATAATACTAAAAACAACAATAGTGGAACA
GTAGCAATCTTTTAGACAATTATTATCAGCGGGTGGGTGGGAGACATGAA
TGGGAATGGGGAAAGGAGGGGGAGAGAGGGAGGAAAGAACCCTTTAAAGA
CCCATAATTCATTGTGCTCTATTGTTGATACAATTACCAACTATCCACGT
GTTCTGATTTCAACACGTGGGTGTCTACCCTTTTATAGTTAAATACATGT
AAAATTATATTATTATATTGAATATATGGATCCTTGAAGGGGACGTCCCC
TTTTTGCCATCAAATAATTTGTTCCCCTCCTTATATATTTGACAAATTTT
CTAATTATCTTTTATTTATTCATAGGGTTAGAATCGAATCCAAGCAGTGA
CGCCTCCCTA
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