EMLSAT00000004324, EMLSAT00000004324-700171 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000004324
Unique NameEMLSAT00000004324-700171
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s227supercontigLSalAtl2s227:172946..176787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000004324 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000004324EMLSAG00000004324-687090Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000018810EMLSAE00000018810-727738Lepeophtheirus salmonisexon
EMLSAE00000018811EMLSAE00000018811-727739Lepeophtheirus salmonisexon
EMLSAE00000018812EMLSAE00000018812-727740Lepeophtheirus salmonisexon
EMLSAE00000018813EMLSAE00000018813-727741Lepeophtheirus salmonisexon
EMLSAE00000018814EMLSAE00000018814-727742Lepeophtheirus salmonisexon
EMLSAE00000018815EMLSAE00000018815-727743Lepeophtheirus salmonisexon
EMLSAE00000018816EMLSAE00000018816-727744Lepeophtheirus salmonisexon
EMLSAE00000018817EMLSAE00000018817-727745Lepeophtheirus salmonisexon
EMLSAE00000018818EMLSAE00000018818-727746Lepeophtheirus salmonisexon
EMLSAE00000018819EMLSAE00000018819-727747Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto773848auto773848Lepeophtheirus salmonispolypeptide
EMLSAP00000004324EMLSAP00000004324Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000004324

>EMLSAP00000004324 ID=EMLSAP00000004324|Name=EMLSAP00000004324|organism=Lepeophtheirus salmonis|type=polypeptide|length=314bp
MVYVQELLICILIYLNGMEGAAPFRRESKQFGLFNIVKFDNVECSERMGV
CFTTGECENRNGKINGHCASGFGVCCVFSVTDCGSTVSQNVTYIRNPGFP
SALRSTQTCSYTINKASPKICQLRLDFERLATAEPTDGVCGKSGAGAAGT
GDKVTVTSPTGFNPPGIGGLCGENLNGQHSKAPTGCTQYFTEKSGVISSY
NRAGERMPAGSSYQNCVRRANGFCSIEYRSRFFTLGSIVTSQTGVCAMGS
VSIPNAVGTSISNFCEKKFNALAAQTQNGXIRSDSIPFQLGVTTKNSPLT
DFEGFELNYNQSPC
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mRNA from alignment at LSalAtl2s227:172946..176787+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000004324-700171 ID=EMLSAT00000004324-700171|Name=EMLSAT00000004324|organism=Lepeophtheirus salmonis|type=mRNA|length=3842bp|location=Sequence derived from alignment at LSalAtl2s227:172946..176787+ (Lepeophtheirus salmonis)
CATCAATATATTTTTTCATCTCTTTTATACAACCTCGATATCTAGAGCAG
AATTCTTTACTTTGATTACATTGCAAAAAATATTTAACAGCATATTGAGA
CTTTTGCGTTCCTTGTTGCTTGGTCACTTGTGATAAAATTCATTGTACAA
ATGGTTTTTTGTGTTGTTTCATAATTAATGGATCTTTAACTCCCCTAATG
AGAATTTTTAGATAATATGTATTAATCAAATCTCAGTTGAAAAGGAGGAG
AGAATGGTCTACGTGCAGGAGTTGTTAATTTGCATACTGATATATTTGAA
TGGAATGGAAGGGGCTGCTCCGTTCAGAAGAGAGTCAAGTGAGTGCTTCA
AAATAAGTCAACTGTTGATTCTTTAATTATTATTTTCTTACATACATATG
TGCAAAATGTAGAGCAATTTGGTTTATTCAATATCGTTAAATTTGATAAC
GTGGAATGCAGTGAGCGAATGGTGAGTCATATCTTCCTCATAACTTGTGT
GATCCCCAAAATGCCTAGTTGACTCAAAACATTATTTATCTCTATATATA
TGCTATGGAGAGAAATGTACCCAAAGAGCGAAAAATCTACTTTTAAAGTC
TATTTGATAGTAATATTAGTTTATAAAATGTTGTGCATTGTCAAGCCTGA
TTTATTCGGTCCATTCCAGTCTTAGGACCGGCCCTATCAGTCCTTAGGAC
GGTCAGTACTAGAAATAATTAAAAGAAAAAGAAATAAAGTTGAGTTTCGT
TACCAAGGACCCAACTTTATATGTTTCATAACTAATAGAAAGAACTGCAT
TGGACCGGACTGAACTGAACAAGACTACAGTCTTCAATCCTAAATAAGGA
TCGACCCAATACTAATAACATGAAGTTAATTGGTTATACCTTGCAATCTT
TCCTATAGAGGAACAAAAAAAACAAAAAAAACATGTAAATTAGTTGGTCG
TGAGCCACTTCTCAGCTATAGAATGATTAATTATTAAATAATAATTATTC
GGAGTTCTTTCAAGTTTAACGAGATCTAATTTGAATTCAGAGCACAATTG
AGTGGAAAAGAAGAAAAAATCGACAGTTGACAACAAAATTCAATATATAT
TATAAAAGATATTTTACAACGTTACATTGCTAACACAAAAATATATGCAG
AGTTTGTTGTCAGCTGTCGATGTTCCTACTTCTTTTATCCTAATCAGTGT
TATGAAGGCTGATTAGTTGAATTCTAATGAGCTCTCAACAATTCCAAATA
ATTATTGAATAATAATTCTATAGATGAGAAGAAATAAAGGTAACGACCTT
GAGTAAGGTAACACCCCGATAAATAACGAATTAAAAATTAAATTTTTCGA
CATTTGGATACGTTTTGACTCGTTTCATAATAATCCCACTCATATATTTT
TTCGAATCTTTAGTTTTAAAAGGATTTAATTATTATGAAGTTTTTTAATT
TATTTATCTTATTCAATATCAACAAAAATGAACTTAAATCCTAAAGATTA
TATTAAATTTGAGCAATTAACTCATTTAAAACAAATATTTTTGATAATTG
AAGGAGAGAGAGACAAAAAATATCATATTAAAATTTTGAAGTGAGAGAAC
CTTCTAAAAAAATTTGAAGTCAATAAAACGTGTTCCGTTCTTGCCATAGA
TCGAAATCTTTACTATTCTTATTTTCGAGCTAAACTGAAGATACTTGACT
AATAATCATCAAACTTTGAGAATTGAGTCACATATCTCATAGCACACTTG
ACTTAGAATTATCCTTCATCTCCACAAAATAATCTCATTTTTGATGTTCA
AATATTTAGCTTTATTACATTACATCAATTTACATATATTTGTTTTCAAA
AAGGGGGTTTGCTTTACAACTGGAGAATGCGAAAACAGGAATGGAAAAAT
CAATGGACATTGTGCTTCAGGTAATTATAGTTTTTTAGAAAGTTGTTGAT
CAATCATTTTATTAACATGTACACGTATTTCTTACAGGTTTTGGTGTTTG
CTGCGTCTTCAGGTATGTCTGAATAAGTACTTTCAAGAATCAAGTTCAAT
GTATTTTGCTAATACATATATTTCATAGTTCATTTGACAAATTTAGTAAT
TAAGTGTAAAGTGCATTAACAGACCTTTTTTATGTTGAATAAATCCGGTT
TGTGACATAATAAAAGTATATATATTTATTTTAAAGATATCAATAACTCC
AAGTAATTCATTTATTGTTCATATCTCTATTGATATCTATCTATCTTAAA
TTTACAATGAAAACATTTATTTTTCAAGTGTTACAGACTGTGGATCAACT
GTGTCTCAAAATGTAACCTATATCCGTAATCCAGGATTCCCATCTGCACT
AAGAAGTACTCAGACCTGTAGCTATACCATCAACAAAGCTTCTCCCAGTA
AGTATTATATCTAGAACAATTAATCATTGATTATTTTAATTTGTTTGTTT
TTCTCATTAAAAAAAAAAAAGAAATTTGTCAACTTCGGTTGGATTTTGAG
AGGCTAGCAACCGCAGAGCCAACTGATGGTGTTTGTGGAAAAAGTGGGGC
GGGAGCTGCAGGMACCGGGGATAAAGTCACGGTAACTAGTCCCACCGGGT
TTAATCCACCAGGGATTGGAGGCCTTTGTGGAGAAAATTTAAATGGGCAG
CATAGTAAGTAAATTACATAGACTAAAAAGTTAAGCCCTTACTATATCTG
GGTATTCTAGTGTATGTTGAATTTGGGGATGGAAATTCGATTACCTGGAG
TATTTCAGTGGGTTCTGATGGAAACGTCAATCGCTTCTGGAATATTAAGA
CGTCACAAATATCTTGTGAGTCCAGTTTTAGGTGAGGAATTACGTTTGTA
GGAAATATGCCCCCGAGAAAATTGCCAGTCATTTACTAAAAAATTTAATT
TCGAGAATACTTTACCACATATATAAAATTCGAGTATAATTTGTTTGACA
TTGCGTGTGCTTTTGTGGTGTATTTGAAAAGCATACAAATAAGTATAAAA
TATTCTCGCAATTTTCTATGCAAATGAATAATTTGTTTCCCTTAAATATA
CATTTAATTAATTCAAATTATTTTTGAAGGGCCCCAACTGGCTGTACTCA
GTATTTTACGGAAAAAAGCGGAGTTATATCCTCGTACAATCGAGCAGGAG
AACGAATGCCAGCAGGTTCTTCATATCAAAACTGTGTTCGACGAGCAAAC
GGATTTTGTTCCATTGAATATAGGAGTAGGTTCTTTACCCTGGGATCCAT
TGTAACTTCTCAGACCGGAGTCTGCGCCGTAAGTGATTCATTGAATGTTC
CTTGTATCTGATTATTAGTATTGGAATAATTTGTTTTTTTAGATGGGAAG
TGTGAGTATCCCGAATGCTGTTGGAACAAGTATTAGCAACTTTTGTGAGA
AAAAATTTAATGCACTGGCGGCACAAACACAGAATGGAGMCATCAGAAGT
AAGGGTTCACATCTTTGACACTAAAACCTCAATATAATTTGTTTATTTGT
TTGTAGGCGATAGTATTCCATTTCAACTTGGAGTTACAACAAAAAATTCT
CCTCTTACAGATTTTGAAGGCTTTGAACTCAACTACAATCAAAGTCCCTG
TTGATGTGAATTTATGTTACTTACATAGTCCTTCAGAATGAGCAAAATGT
TTATTCGATACTCGTGTATAATTTACTTTCGTTTATTTACTCAGTCCCAT
CTATCTCATTCAACTTTAAAAAAAGAAGTAAAAAAACCTCAGTTTTGAAC
CTCAGCAAATAATGTTTATTTTTCAATATCTTAGTACAAATAAGGCTTCC
TTACAAAAGGACAGATGAACAATTAGTCCTACAACTCTGTCA
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