EMLSAT00000004619, EMLSAT00000004619-700466 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000004619
Unique Name	EMLSAT00000004619-700466
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s240	supercontig	LSalAtl2s240:50280..54800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000004619 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000004619	EMLSAG00000004619-687385	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000020149	EMLSAE00000020149-729077	Lepeophtheirus salmonis	exon
EMLSAE00000020150	EMLSAE00000020150-729078	Lepeophtheirus salmonis	exon
EMLSAE00000020151	EMLSAE00000020151-729079	Lepeophtheirus salmonis	exon
EMLSAE00000020152	EMLSAE00000020152-729080	Lepeophtheirus salmonis	exon
EMLSAE00000020153	EMLSAE00000020153-729081	Lepeophtheirus salmonis	exon
EMLSAE00000020154	EMLSAE00000020154-729082	Lepeophtheirus salmonis	exon
EMLSAE00000020155	EMLSAE00000020155-729083	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto770652	auto770652	Lepeophtheirus salmonis	polypeptide
EMLSAP00000004619	EMLSAP00000004619	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s240:50280..54800+

protein sequence of EMLSAP00000004619

>EMLSAP00000004619 ID=EMLSAP00000004619|Name=EMLSAP00000004619|organism=Lepeophtheirus salmonis|type=polypeptide|length=356bp
MASMVGGMPGAESRXKKXKKXTKSSKLGGDGSTEVVXTETTTTSSSSSHL
SQHENGLSSFDQKGGTDNFVEEKMFCHHCDDSLAGHRYVLRDDHPYCIKC
YESXFANNCDECSKIIGIDSKDLSYKEKHWHEACFVCTKCRTSLVDKQFG
SKADRIYCGSCYDSQFATRCDGCGDVFRAGMKKMEYKTRQWHEKCFTCCT
CNNAIGTKSFIPKEHDIYCAKCYEDKFATKCIKCNKVITQGGVTYRNEPW
HRECFTCTHCEKSLAGQRFTSRDDQPYCADCFGELFSKRCTACAKPITGI
GGTRFISFETRHWHHDCFVCSTCKGSLVGKGFITDAEKIICPECAKKKLM
ADTIEQ

mRNA from alignment at LSalAtl2s240:50280..54800+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000004619-700466 ID=EMLSAT00000004619-700466|Name=EMLSAT00000004619|organism=Lepeophtheirus salmonis|type=mRNA|length=4521bp|location=Sequence derived from alignment at LSalAtl2s240:50280..54800+ (Lepeophtheirus salmonis)
AGTCTGACATTGAGTTCTAAGGAAGAAAGAAGGATAAAGAGGCTTAAATA
AGCAGCTGTTACGTTTAAAAGATATTTGAAGAAGAAAGTTAAGCTTAATC
AAAAAAATATGGCAAGTATGGTGGGKGGKATGCCTGGAGCCGAATCTAGA
GKGAAGAAGGKGAAGAAAGWGACAAAGAGTAGCAAACTAGGTGGGGATGG
ATCCACAGAAGTCGTGMCCACTGAGACAACCACCACATCCTCTTCTTCCT
CCCACTTGTCTCAACATGAAAATGGACTTTCTAGGTGTGAAGACGACTGC
ATGGCCTATATTTATATAACATAACTTCTTGATTCATATCCATAACACTC
ATTTTTGAATTTAGTTAACCCTCTGCATGTCCCTTAACAAAGAATGATTG
ATGCGACTACATAGTCCTGGATCGGAGAGCAACTCAATTCGAAATGTAAT
ACATATATTATTTGATGGATTTCCGACTAGTATAATAATTAATTGACTAA
ATATATTTATTGTTTTAAATAGCATTATTTTGCTACGAAAAAAAACAACA
TTTAAAAAATAGGATAAATCCTTCATAGACATACATACTAGGGCAGTTCG
TTTTTCAACTTTCTTCAAATTTTGATTATACCTAGTGCAGAAAAGTTGTT
GGGATTCGGAAAGAAAATAACCTATTCAAAATGTTCTTGTCCTACGAGGT
CATCTTTAGAGGGCACATCTTGATTAAATTATGAAAAAAGATAAAAACTC
TTTACTTAGTATATATAGATACTAAAAATTATAACCTATTAAAAGTGTTT
ATACAGTTTTTTATAAATATGTCCAATGGCACAAAAAAAGGGGTGAAAAA
AGTTAGAAAAATTTGATGATCCGCGTATAACGTGCATCCTTTTTTTACAA
AAGAAAAAATCATAGTTTCCCCACGTTATTCTATACTTTTACTTCAAATG
TTAGCTTTAGAAAAAAAAACTTTGAAAATCTTTTTTATAGGTTAGAATAA
TGTCTATCATAATTAATAAATTCAAAGTAATGATTATTAAGGGATTTTTA
TCTTTATTGACGAAATAAAGAACTTTTATCTCCTTTTTAACTTTGTAAAG
ATGACATCTTAGAGCAATGAAACTTTGCATTGATTATTCTCTTACCATAT
CTAAACTTTTCCAATCTAGCCCTAATCAAAATTCGAAATAAGTTGAATAA
CAAACCATCCTAATACATATATTTTTTAATGAGAGAAAATACCGTGGAAA
TATATCTTTTCAAAGAACTTCATTTTAAACAATAGTTTTTCACGAATAAA
TGTGGGATATCGGATCCTTCATACATAATCTATCATGTACCACCTAACAT
TAAATGATTAGCAATTATTTCATACATTAATAGCTGCACATACACTTCAT
TCAAAGTGCGGCAATTAATTATGACTGTCAAAACATAGTGTTTTATGAAG
CATTTAATAGTTTGAAAGATAAACTACATTTATTTTTATATACGCTCAAA
TAATGAGTTTTTTGTTATTTTGTTTTTTTCTTTTAGCTTTGACCAAAAGG
GAGGCACTGATAACTTTGTTGAAGAGAAAATGTTTTGCCATCATTGTGAC
GACTCCTTGGCGGGTCATCGTTACGTTCTTCGCGATGATCATCCCTATTG
TATCAAGTGCTACGAGAGCGKCTTTGCCAATAATTGTGACGAATGTAGTA
AAATTATTGGGATTGACTCCAAGGTATTTTGAGAGTCACTCTACTCTTTT
CTTATTTCAACATTTATCAATTTGTACTTACCTAGGATTTGTCATATAAA
GAGAAGCATTGGCATGAGGCATGTTTCGTTTGTACCAAGTGCCGTACTTC
CTTAGTGGATAAACAATTTGGCTCTAAGGCTGATAGAATCTACTGTGGTT
CCTGCTATGACTCTCAATTTGCCACGAGATGTGATGGTTGTGGAGATGTT
TTCAGAGCTGGTAAGATGAGCATAAAACTATTCTATATTTAGATATCGGA
ACTTTATTAATTTAGATCCTTATTTCAGGTATGAAAAAGATGGAGTATAA
AACGAGACAATGGCATGAGAAGTGTTTCACCTGCTGTACATGCAACAATG
CAATTGGTACAAAGTCCTTCATTCCCAAGGAACACGATATTTACTGTGCT
AAATGCTATGAAGATAAATTTGCAACCAAATGCATTAAGTGCAACAAAGT
AATGATAGAGAATCTTATAATTTAATCCAGAGAAAGAAGAACAAATTAAA
TATGTTCCTTTCTTTTTTTACAGGTCATTACACAAGGTGGTGTCACATAC
AGGAATGAGCCATGGCACAGAGAGTGCTTCACATGTACTCACTGCGAAAA
GTCACTCGCAGGACAAAGATTTACCTCTCGAGATGATCAACCATATTGTG
CTGACTGTTTTGGAGAACTTTTCTCAAAACGTTGCACGGCTTGTGCTAAG
CCTATTACAGGTATGTTCCTTGTATTCTACTTCATTTAATGTGTGCTTGA
ACAGCGGCCCTTTCTTGATGTAAGAAGTAACAAGCATACAGTAGTAAAAC
CATATGTTATGTAGGTGAGGGCTTTTAACAACTTTGGTAGTTAGTTATTA
TTTTTATCTTTATTACATAATTCGACCAATAAAACAACAACTAACTTGGC
ATGATGCATCAATAATTTAAACACATTCAGTATTTAGGAGGACATTCAAT
TTCCCACCGCATTTTATTAATCATTTTTTGTCTCGAAAGAACAACCCATA
ATAACAACATTTCCAGGCATTGGCGGAACGAGATTCATATCCTTTGAGAC
TCGACACTGGCACCATGACTGCTTCGTTTGCTCAACGTGCAAGGGCTCAC
TTGTTGGGAAGGGATTCATCACGGATGCAGAGAAAATCATCTGTCCAGAA
TGTGCTAAGAAAAAGCTCATGGCAGATACGATTGAGCAGTAGTGTAACGA
TGTTAGGAGATTCAATTTCACAAAAAAAACATACAAATTATTATTAATTG
CATAAATCTTTTATTTTCAACTTAACGGATCAAATCATATTAATTAATCG
CATGTATGTATTAACTCATAATATAACCAAAATTATAAATATCATAGGCG
ATGTAATGAAAGATTTCTTAAGAAAACAAACAAACATTTAATTGCTCAAA
AATAAATTATTATCATTATGAGAAATAATTATAATAAAATCAAATGATCA
AATTTGACAACTAATTTATTTTTTAAAACCAAACACAAGTTCCTTGCTTT
TCCTTATTATAAATCAATGTGCCTAAATACAAATCCATATGCAATCATAT
GCCTTGTTTTCTTGCTCTAAGGCAATTCAACACTTTTAGCTTCTAATACC
TATTGCACGCATCGCCTAATCCTGGTGAGTGGTACTTTTATTATAGGTAA
TAGAGCGTTTTCATGAGACGTCAACATTATTCATMCCGGCCATTTCGGGA
GCCTAAATATCAAATATTACAGTAATTAATACCCTTTTTTCAATAATATG
AAGGAAAATCTAAGTGAAGCATTGAACGTCAAAATGGGACCAACCAATAG
AAGGATTTAAACCTTTTAATTCTATAAAAATTATTTACCCTTAATGCATA
CTTTCAATATAGTTTAGACCCTAATATGTTATTAAATCGTTGTAAGCAAT
TAATCAACTGTTATACCCAATGGAAAGAATTAGATATTTTTCTCTAATTA
TCATATTTGACAGTAATGGATCTTCAAAAAAAATTTTTGTATAAATATTT
GTACAAAAATTAACTTTTTTGTGAAAGCCGGGAATATTTGAATTTTTTTT
CGGAAAATTTAATATTAGAAATTTCATTTTTGAAATGCTGTTTATCACGG
GCCCCATCTAGTCGTCAATGCAAATGTAAAGCCATTTTATAGCTTTTAAT
CAAGATTTATTGGCAGTGGATCCTTTTTATGTCGTTTATCAAAATTTTGA
TGCAATTTATGACGTCAGTGAAAACTCTTTATAATTAACTCTATTTTTTA
CTTATCCGCCATTTTGTATTTCGTCAATTATTACTTCTTTTTCTTTGTAC
ACATTATAGGAAAAGGAGGTCTTGGCTCCACTAAGTTTGTGGCATTTGAG
ACACTAGCCTGGCATAACGAGTGCTTCTTCTGTGCTCACTGCAATGAGTC
CATGGTTGGAAAAGGATTCATCCAGGATGAAGGAAACATTGTGTGCCCCG
AGTGTGCCAAGAAGAAGATGATTGCGGAAATGGACGCTCAAAATGAATAA
TAAAAAAGAACCACTTTAATATTTATTATACCTTTTGCTCTTTGAAAGAG
ACTGCAACCCCCTAAAGTCAAAGTACAGGGCTCTAAAATTCACATCATAA
TATGGACATTCAAACTTTGAAAAAGAAGAAAAAAAAATCTTTACTCTTTA
GACAGTGTGTGTATTTTTTTCCTCTTTTTCTTTGTACATAAATCATCTTT
TGCATCAATTATTTGTTATTGTTTAAATAACTTTTTACAATCATACACAT
AAATAAAGTTATATTATATTC

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