EMLSAT00000004620, EMLSAT00000004620-700467 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000004620
Unique NameEMLSAT00000004620-700467
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s240supercontigLSalAtl2s240:513173..514112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000004620 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000004620EMLSAG00000004620-687386Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000020156EMLSAE00000020156-729084Lepeophtheirus salmonisexon
EMLSAE00000020157EMLSAE00000020157-729085Lepeophtheirus salmonisexon
EMLSAE00000020158EMLSAE00000020158-729086Lepeophtheirus salmonisexon
EMLSAE00000020159EMLSAE00000020159-729087Lepeophtheirus salmonisexon
EMLSAE00000020160EMLSAE00000020160-729088Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto778300auto778300Lepeophtheirus salmonispolypeptide
EMLSAP00000004620EMLSAP00000004620Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000004620

>EMLSAP00000004620 ID=EMLSAP00000004620|Name=EMLSAP00000004620|organism=Lepeophtheirus salmonis|type=polypeptide|length=166bp
MDYTRMRLFVFIILIFLIDWSFTKKCTDKHNKCDYEKCMEKTYREECQNT
CGACECKDHLHDCGSKDMNCSLSXVLFQCPYTCQLCEKDYCGNIMRDKYC
KKLKEKNLCENEYIKKVCKRSCKLCAKECKDYGTKVLCAGYNGTNQCKKS
HYTRNLCRKSCGFCKN
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mRNA from alignment at LSalAtl2s240:513173..514112+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000004620-700467 ID=EMLSAT00000004620-700467|Name=EMLSAT00000004620|organism=Lepeophtheirus salmonis|type=mRNA|length=940bp|location=Sequence derived from alignment at LSalAtl2s240:513173..514112+ (Lepeophtheirus salmonis)
ACTTCGTTTTGAAACGACCATTGGAATGGACTATACAAGGATGAGGCTGT
TTGTATTTATTATACTTATTTTTCTCATCGATTGGAGTTTCACAAAAAGT
ATTTAAATTGGGATTTTAATCATTTAATATTTCTTTGAAGTGAAAATAAA
ACAATTATTTTTAATTAGAATGTACAGATAAACACAATAAATGTGACTAT
GAAAAATGTATGGAAAAAACATATAGAGAGGAATGCCAAAATACTTGTGG
AGCCTGCGGTACGTTAACTCAATTATCTCATTTAATTTTACAAAAAATAT
TCATCCATAAATTATTATAGAATGCAAGGATCACTTACACGATTGTGGAT
CCAAAGACATGAATTGTAGCTTGTCGAGMGTCCTTTTTCAGTGTCCTTAC
ACATGTCAACTATGTGAAAGTAAGTATTGATGAACTTTTTTTTTTCTTAA
AGGATGCAACAATTCCTAGACAATTTTTATTCAAAATAGAGGACTATTGT
GGAAACATAATGCGTGATAAATATTGTAAAAAATTAAAAGAAAAAAACTT
GTGTGAGAATGAATACATAAAAAAAGTCTGTAAAAGATCCTGTAAGCTAT
GTGGTAAGTTTGAGAATAATAAGTTAGACGGATCCAAACTCTCTCTTTGA
AATTTAGCTAAAGAATGTAAGGACTATGGAACTAAGGTGCTTTGTGCAGG
ATATAATGGAACAAATCAGTGCAAAAAGTCACATTATACAAGAAATTTGT
GTAGGAAATCATGTGGCTTTTGTAAAAATTAGCAAACGTCTACATATACA
CTTCAATCATTTTTATTAATTTATAAATATTTCCTTGACAAATTTTATTT
ACAATACAGTTTGATTGAAAACTTTTTATTTTATTTTAAARTWTMATYTA
CATAAYTCTATGATAATAAAGCAAAGTTMGTCCATTTTTC
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