EMLSAT00000004737, EMLSAT00000004737-700584 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000004737
Unique Name	EMLSAT00000004737-700584
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s249	supercontig	LSalAtl2s249:440130..444918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000004737 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000004737	EMLSAG00000004737-687503	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000020709	EMLSAE00000020709-729637	Lepeophtheirus salmonis	exon
EMLSAE00000020710	EMLSAE00000020710-729638	Lepeophtheirus salmonis	exon
EMLSAE00000020711	EMLSAE00000020711-729639	Lepeophtheirus salmonis	exon
EMLSAE00000020712	EMLSAE00000020712-729640	Lepeophtheirus salmonis	exon
EMLSAE00000020713	EMLSAE00000020713-729641	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto777686	auto777686	Lepeophtheirus salmonis	polypeptide
EMLSAP00000004737	EMLSAP00000004737	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s249:440130..444918+

protein sequence of EMLSAP00000004737

>EMLSAP00000004737 ID=EMLSAP00000004737|Name=EMLSAP00000004737|organism=Lepeophtheirus salmonis|type=polypeptide|length=734bp
MSMCPFLNPSTLALLLSIYCGSWNHLSVGISCEDKYRIPSSHVTPLLHQF
HDLDCFYEPQLEDKECWGYETQKCPHLRNPIYSNCENPKDFFKQADFGYV
DGFRKSIKRICSSGHSRLECSDKLTFCRGKNIFIDFKTIPQKRNQVLRYD
INVLKPGEIGGQCKLDSSLLKSQLQLMSSLQSWAPELRNFVSVKELECDE
IIETPTMIIKLDATVNIYHHFCDFFNIYASLHVNASDRNPNMYSDDVRVL
IWENQPYLSSLGPVWQAFTKYPLWNLNTFGGKKVCFKNAIFPLLPRMVYG
LFYNTPITDGCRGSSLFKAFSEFIPKRLNLPWAAEPDGEKIRVTILSRRT
KHRRILNVDALMKILSLKGMYKVNLAEFTPKTDYIYQLDIIMNTDILVGI
HGAGLSHMLFLPEWAVVLELSDCDDPSCYFDLTRLRGLKHIGPLKSTEKE
DQGHHPTMKGSHAKFTNYSFDPDEFLSYVEEGTIYIKNHTAFRKLNKSFW
TNTCCSHPLFDVPGESNGVIGAKTASRRRVFNELGIQPESLPLEKIQFLT
RILYAAPSQCKIWGENELDYIMIFKGNVVINPNPEEVYEVLYLKYEDMSD
FVKEESSKGTLTPCSYTGSSNTRKYAFPSSSIANRYSKKYLLDQEEYPSR
NVQPCANCKGITFLSLRPPLYPESGNKKEIRVQKTEEKIIATSYRRRSAT
PELTKAISSFKIIENMIKSSSSNVSTKSKPLFLP

mRNA from alignment at LSalAtl2s249:440130..444918+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000004737-700584 ID=EMLSAT00000004737-700584|Name=EMLSAT00000004737|organism=Lepeophtheirus salmonis|type=mRNA|length=4789bp|location=Sequence derived from alignment at LSalAtl2s249:440130..444918+ (Lepeophtheirus salmonis)
AAGGTTATTTCTTTGGAAGCCGCGATGAGTATGTGCCCTTTCTTGAATCC
CTCGACTCTGGCTCTCCTTCTCTCCATTTATTGTGGATCCTGGAATCATT
TGTCCGTAGGAATATCATGTGAAGACAAATACCGGATCCCTTCCTCGCAT
GTCACTCCTCTCTTGCACCAATTTCATGATCTGGACTGTTTTTACGAACC
TCAGCTAGAGGACAAGGAGTGTTGGGGATACGAAACCCAGAAATGTCCTC
ACCTTCGAAATCCAATTTATTCAAACTGTGAAAATCCTAAAGACTTTTTC
AAACAAGCGGATTTTGGATATGTGGATGGATTTCGTAAGTCAATAAAAAG
GATTTGTAGCTCCGGACACTCCAGACTTGAGTGCTCTGACAAATTAACTT
TTTGTAGGGGAAAAAATATTTTCATTGATTTTAAAACTATTCCCCAAAAA
AGAAATCAAGTTCTACGTTATGATATCAATGTTTTGAAACCGGGAGAGAT
TGGGGGTCAATGCAAGTTGGATTCATCTTTACTTAAATCCCAATTACAAT
TAATGTCTTCGCTTCAATCTTGGGCCCCAGAACTTCGTAATTTTGTATCA
GTCAAGGAGCTGGAGTGTGATGAAATCATTGAAACTCCTACAATGATAAT
TAAATTGGATGCTACTGTTAATATTTACCATCATTTTTGTGATTTTTTTA
ACATCTATGCTTCTCTTCACGTCAATGCTTCAGATCGGAATCCTAACATG
TATTCTGATGATGTACGTGTACTCATTTGGGAAAATCAACCCTATCTTAG
TTCCTTAGGGCCTGTGTGGCAGGCTTTCACAAAATATCCTCTTTGGAATC
TGAATACCTTTGGTGGCAAAAAGGTTTGCTTTAAAAATGCCATCTTTCCT
TTGCTACCTCGTATGGTCTATGGTCTGTTTTATAATACCCCCATCACAGA
TGGATGTAGAGGATCCTCTCTATTTAAAGCATTTTCCGAATTTATTCCAA
AAAGACTCAATTTGCCTTGGGCTGCTGAGCCAGATGGTGAGAAAATTAGG
GTTACTATACTATCAAGACGAACGAAACATCGTCGTATTTTAAATGTGGA
TGCATTGATGAAAATTCTCTCTCTAAAAGGAATGTATAAAGTTAACTTGG
CTGAATTCACGCCTAAAACAGATTATATTTATCAATTAGACATAATAATG
AATACAGATATCCTCGTTGGTATTCATGGTGCAGGTTTATCCCATATGCT
TTTCCTTCCCGAATGGGCTGTAGTACTCGAACTCTCGGACTGTGATGATC
CATCATGTTACTTTGATTTAACGAGATTAAGGGGATTAAAACATATCGGG
CCCCTCAAAAGTACGGAAAAAGAGGATCAAGGACATCATCCAACAATGAA
AGGATCTCATGCAAAATTTACAAATTATTCCTTTGATCCAGACGAATTTT
TGTCTTATGTAGAAGAAGGAACAATTTACATTAAAAATCATACTGCCTTT
CGCAAACTTAATAAGAGTTATAATGAAGATATTGTAACAATAACCAGAAA
TGAACTGTGATATTTTTTTTTTTCATTTACTACTAATTCATATTATTATT
TTTTAATTATTGTATATTTGATTTAATTTACCTCAGAAAATATCCTTATA
CAATAATTGATACTCATTATTACATAATCTTTTTTTATTGGCCGATTGAG
TTATTTTAACTTTTAACTAATTAAGATTTTGTAAGTCCCTGATGAATGAT
ACTCATAATATTCAACCACTAATCTTAGTAACACTGTGATATTTCGAATC
TAATGTTTATGAACATATTTAAAAAATAAAAAAATACCGTATTTATTCAT
AAATTCTAAATGCAACTTATATTAACTGTTAAAAAAAATTCTTTATAGAA
TTGTTGAAGAATGGCCCGCAGGGAGTTTCAATCATGTGTTGCTCTTCGTA
ACAAAATAGATCCCGTTCAAAAAGTTCTTTTAAAAGAATTTTGTATTTTG
GTAGATGAAAAAGATACAATTCTTGGAAAGGCAAGTAAAAGGAAATGCCA
TCAACTTGATTCAAAGGGTAAATCCCTTCTCCACAGAGCATTTTCTCTGT
TCATTTTTAATGAAAAAAATGAACTTTTATTACAGAGACGGAGTAAGACA
AAGATAACTTTTCCAGGTCTGCAAATTCTTACAAATCGAATCTGAGGTAT
TTAATTACAATATAATCTTATTTTTTAATTCAGGTTTCTGGACAAATACG
TGTTGCTCACATCCGTTATTTGATGTCCCTGGAGAGAGTAATGGAGTTAT
TGGAGCCAAAACTGCATCACGTAGAAGAGTATTTAATGAATTAGGAATTC
AACCCGAGAGTTTACCATTAGAAAAGATACAGTTCCTCACGCGTATTCTT
TATGCTGCTCCTTCTCAGTGCAAAATCTGGGGCGAGAATGAGCTAGATTA
TATCATGATATTTAAGGGAAATGTGGTGATTAATCCAAATCCTGAAGAAG
TATATGAAGTATTATATCTAAAGTATGAAGATATGAGTGATTTTGTAAAA
GAAGAATCCTCAAAAGGAACATTGACCCCGTGGTTTGAGATTATTTCAAA
AGAATTTCTTCCAAGATGGTGGAAATCAATTGATAATTTAGAATCATTTG
TTGATAAAGATAAAATACATTCGTTTTATTAAATACACAATAAAGACGCG
GGTTGTATAATTGTTGAATAACTTTTGACTATTGGAACATCATTATTAAT
GTAAAGTTAAACGTTCTAGTTCGAGCATGGAGATAAGAAGGGATAAATAT
AAAAACATTTCTCAGAAGATTGAGAATATGATTTTATTATATAGTCCCTT
ATGACGACATCGAGCACTCTTATATTATATTTATCTGCTTCAATTTTTCT
AACCTATAACAAGTATTTGCTGACACATCAAAAAAATTACGTCAATATCA
TATACGTAATTACATATCTTAATCCTCCTTGAAGCAGGCACAATTCCATG
ATTACGAATCATTTTTAAAGTTTAGTTCGATTCTATAAATTTATTTATAT
ACTATAATTATTAACATTTTGATATTTAGAAGCGCTTCTCTCTTATTTCT
GAGAATTAACTGTCACAAAAATTCCGAGTATACCTTTTTTAATAGATTAT
TATCCAAATAAATTAAATTAAAACCTTCGAATTTCTTTATTTGTGGCCTC
TTCATCACCTTCATTGCAACTTGTATTTGAAGTGTGTTCCTATTGAAATA
TGGACCTAAGTTATAATCCCTCTGCGTTCAGCTCATATACAGGATCCTCT
AATACAAGAAAATATGCGTTTCCATCATCCTCAATAGCTAATCGCTACTC
AAAGGTTCGTATATTTGATAAGAAATGATATAATGATTTAGTTCAATACA
GTTTCTTGGATTTATTCATGGTACTCAGTACATGTATATATATACATATG
TCTTAATATAATACTTTACCTAATTTCAGTAGTTTTGTAATATTCCATGA
ATTTATTAAAATCAAGGCCAAATTTAACGAATTTCTCTAATTTAATTGAT
TCATTATTTGAAAGAAAATCTTTTTTAAGTCACATTTTACTGAAATTATA
ATCTGCCAAATGAATTTGAGTACGAAAATAGGATGAACCAGGTAATATAT
CAAACATTTTTGATTTGTTTAAAAAACTGTTGATTACTTTGAAAATTGAT
TAATTCAATTTTATAGAGAATGCGCAAATGATTAAGCATATAAGCTTAAT
AATTATAATTATTTAATAATTCATCTAAATCTTGTTTCACAGAAATACTT
ATTGGACCAAGAGGAATACCCATCCAGAAATGTTCAACCATGTGCAAATT
GTAAAGGAATTACATTTTTATCATTAAGACCTCCTTTGTATCCGGTAATT
AATATTATAATTCATGATATTTAATGAATTTAACAGTATTGTTCTTTTTT
ATTGTAGGAATCTGGCAACAAGAAGGAGATTAGGGTCCAAAAAACTGAAG
AAAAAATAATTGCTACATCATATCGAAGACGTTCTGCAACTCCAGAGCTC
ACAAAAGCCATCAGTTCATTTAAAATCATTGAGAATATGATTAAATCTTC
GTCATCAAATGTATCGACCAAAAGTAAACCCCTGTTTCTCCCATAAATTC
AACTTTAGGGTGATCTTTTTTGAAGATTTATCGTTTAGGGAATTATGTTA
ATAATAAAAAAATATATTAATCTTACTGTTAGTTATCATACATACTTAAG
TTGTATGCTTTCAAAGCCCATTTAGGATATTTAATCCCAAATATATACTT
TATTTGTAATAATTATTTGCTGATCTTTCAAATGAATAAGATGATGTAAT
ATTTACATTAAGTGATTCGATTTTAACAAACCAAGGGATGGACTGATATT
GCTTAATTTAAATCATTTTTTGTTTTACAATTCAATTTTTTCGACATATA
TACAGAGGCTGGCAGAAGMATTTACACTACACTTTATAAAGTTCAATAAT
TTTATTTTTTTATTTATTTTTGCTCTTGGACCTTCATTTTGAAGACTGAG
AGCAAAAAGGTTGGAGTAAATGTTTTTTATATTTGTTGAGGCTACATAGA
AACAACAACAGTAATTAAAAAACACGGTCATAAGAATGTACATCTAAAAC
CAGAAGAGCTCTGATCTAAAACAAAAACAGTGTAAATACTTCTGCTCACC
TCTGTTTGTTATAGGCAATGCCGAAATCGGTCATTTATGGGGCAATGATT
GTGGGTTATTTGATTATTAAACAATTTATTGTTAAGCAA

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