EMLSAT00000005166, EMLSAT00000005166-701013 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000005166
Unique Name	EMLSAT00000005166-701013
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s272	supercontig	LSalAtl2s272:98980..103362 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000005166 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000005166	EMLSAG00000005166-687932	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000022572	EMLSAE00000022572-731500	Lepeophtheirus salmonis	exon
EMLSAE00000022573	EMLSAE00000022573-731501	Lepeophtheirus salmonis	exon
EMLSAE00000022574	EMLSAE00000022574-731502	Lepeophtheirus salmonis	exon
EMLSAE00000022575	EMLSAE00000022575-731503	Lepeophtheirus salmonis	exon
EMLSAE00000022576	EMLSAE00000022576-731504	Lepeophtheirus salmonis	exon
EMLSAE00000022577	EMLSAE00000022577-731505	Lepeophtheirus salmonis	exon
EMLSAE00000022578	EMLSAE00000022578-731506	Lepeophtheirus salmonis	exon
EMLSAE00000022579	EMLSAE00000022579-731507	Lepeophtheirus salmonis	exon
EMLSAE00000022580	EMLSAE00000022580-731508	Lepeophtheirus salmonis	exon
EMLSAE00000022581	EMLSAE00000022581-731509	Lepeophtheirus salmonis	exon
EMLSAE00000022582	EMLSAE00000022582-731510	Lepeophtheirus salmonis	exon
EMLSAE00000022583	EMLSAE00000022583-731511	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto772085	auto772085	Lepeophtheirus salmonis	polypeptide
EMLSAP00000005166	EMLSAP00000005166	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s272:98980..103362-

protein sequence of EMLSAP00000005166

>EMLSAP00000005166 ID=EMLSAP00000005166|Name=EMLSAP00000005166|organism=Lepeophtheirus salmonis|type=polypeptide|length=676bp
MSDGAKVXTXIXCIQDGEFHRFQEEMSQDLNRNLSIQDESGRKILHWASS
LGSFELVEWLLQKGADVDPVDEALWTPLIIASSAGNEKIVRILLSFGALV
DXKTDQGRXALFYACSRNRISIVKLLENVNADVNVQDKLGATSLHRATGV
GHVELMNYLLNHFSNKINANLQDNIGNTPLHIACEEINFQCVEVLLKIGC
DPSITNKEGKKAIELAPIDMQRKLQSYIDRFTTNSKXSSTVSSRSSSFFS
AFRAGIACSLQTYYKELNKKSLYYYVTQXTHLAEVSDDVHSVLSKETTLK
RDKPWDQKNSPCSFISLLILLCTINELDATANDVVEDKKDEKLLSIFNVV
TFPNTFCTGSASKNGTCYTADECETRGGTASGSCASGYGVCCXITLSCGG
TSSDNCTYIEQSSFTSTSSLNSNPCTYTICKNSNMICRIRLDFTTFTIAN
PFTTPVGADAAGTTITNAGATGDCVTDSFSFTSPGSRGSPVICGANSGQH
MILDASDECNVLNFNIGSSAATSRSWIIKATQYTCGDYDSLGGPPGCLQY
FTGTTGKISSFNYPTSETTTTTSSSHLSNQCYSICFRQEATKCSICFASA
IAGQNTFGLSVSPNAAAKSAVDSECTSDYLQIPNGVAKGAAAAAVATTQK
FCGRILNLKEFGSRNICXQLQXSXQS

mRNA from alignment at LSalAtl2s272:98980..103362-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000005166-701013 ID=EMLSAT00000005166-701013|Name=EMLSAT00000005166|organism=Lepeophtheirus salmonis|type=mRNA|length=4383bp|location=Sequence derived from alignment at LSalAtl2s272:98980..103362- (Lepeophtheirus salmonis)
ATGAGTGACGGAGCAAAAGTTAWAACTTSGATAWAATGTATACAAGATGG
GGAGTTTCATCGATTTCAAGAGGAAATGAGTCAGGATCTAAATAGGTGAA
TGCAAATAATCCTTGGGCTTAAAAGTCGTCCGATATTTCTGATTATTAAT
TGTTCAATTTGCATCCGTTTCAGGAATCTTTCCATACAAGATGAGTCTGG
TCGAAAGATATTGCATTGGGCTTCATCCCTTGGGTCTTTTGAACTTGTAG
AATGGCTTCTTCAGAAAGGTGCTGACGTGGATCCCGTGGATGAAGCACTG
TAATGTAGCTCCTCCGACAATTTTCATTAGTATATTATTTTTAAGGGCTT
CTATTTTAATAGTTGGACTCCGTTAATTATTGCAAGCTCTGCTGGAAATG
AAAAGATTGTAAGAATTCTTCTTTCCTTTGGAGCTTTAGTGGATGSTAAA
ACGGATCAGGGAAGAAKTGCCTTATTCTATGCTTGCTCCAGAAATAGAAT
CTCTATTGTGAAATTGCTAGAAAATGTCAATGCGGATGTAAATGTACAGG
ATAAATTGGGAGCTACTTCTTTACATAGAGCAACAGGAGTTGGTCATGTA
GAGTATGTACATATATATTTGATTCTTTTCTGAATATAGAAAGAGCTTAT
CTTAATTCTAATTTCAGGTTGATGAACTATTTACTAAACCATTTCTCCAA
TAAAATAAATGCCAATTTACAGGATAACATTGGAAATACTCCCCTACACA
TTGCATGTGAAGAAATAAATTTTCAATGTGTTGAAGTACTTTTGAAAATA
GGATGTGATCCATCTATAACTAACAAGGAAGGAAAAAAAGCCATAGAATT
GGCCCCAATCGATATGCAGAGGAAGTTGCAGTCTTATATTGATCGTTTTG
TAATACCAAAATAAAAATAGTTGGATTCAATTTTCTTATAATTCTTTTTT
ATATAACCTTCATATTATTAAGTCATATATTATAAAACATTTACAATTAC
AAACTGTATGATTTCATTAACATAATGAAATGTCTTGGTTAACATGGAAC
CTGCGAATACCTTAAATTGAATCCAGCTAAACCATCGGCATCNGCAGCAG
TTTTTGCTCGAAAATCAAATCTAAAGGGAGTTGTAGTACCTAATTACGGG
AGAAATGAAGACAAKATTAAAATTGGTATTATATTCAATATTTCAACTCA
CTCCTTGCAACACCATGTTCAGTTTGAAGGGACTGTGTATTGAATTTTCC
ACCGCAGAACTCTAATAAAGTAGGGGGAGCAGCTGGAACAAGAACAGTTG
GGATAACAACTGAAGTCTCTTGCTGAAATGATAAAATCATTGTTTGTAAA
AATCCTCTTCTAATTTAATAGAGGAGTACTTACACAATCAATCGCTATCG
CTGCGTCCTGTGATTTTATTGCTGTGGCTGSTTTWAGTAAAAAGTCATTA
TCTCCAACTGCAGAATAATCAATGCCACAAAAGCCCTCTTCCTGTCGAAT
GCAGTTGGAGTACAAATGCCCATCGTTGATTTGACCACCATCAAAGTTAT
AGGACTTAATAGAGCCAGAAGGCCCTGTAAAATATTGAGTACATCCTTGA
GGGGGTCTGTTCATATCATCACAGGCTATTTGGGTAACTTTAATGTTCCA
CGCACGATTTGCAATGGCCGCTGTTCCTGCATCGACATTAAAYGTGACGG
CACCAGCTAAAGTTGTATCGACATACACTAAGAAATAGAAAGATGAGAAT
AAGAAGCATTCGATTTACACTATGTATTGACTTACTATGCTGTCCTGATA
AACCATCTCCACAAAGACCCCCGGGGCCAGGAGGACTAAAACCACTTGGG
CTGGTAATTGTAATTTTATCAAAGTTGTTTGCTCCACAGGCTCCGTCAGC
AGGCTCGGAGGKAATAAGGTTTTCAAAGTCTAATCGTATGGAACATATGT
CTGTAAAAAAAAAAAAAGATTATAGWCTCATTAAACCTCGGTGATTCCAA
GATAAGACATACTTGACTGACAACGTTGAATTGTGAATGCACAAGCCGTT
GCTGCTGTTACAGTAAAGGCAGTTGGAAATCCAGGACTTCTAAAGTAACT
GTTATTGCGACTGATGGTTGAACCACACGTATCAACTCTGTGTATAATAA
AAATTAGATTATTTTTAATCCAATAATTATGTACTTACATGAATAGACAA
CAAACTCCAAAYCCAGCAGCACAGTTTCCAGCCGCTCTTCCTCCTTTTTC
AGCGCATTCAGAGCTGGAATAGCATGTTCCCTACAAACATATTACAAAGA
ATTAAACAAAAAATCCCTTTATTACTATGTAACTCAACRTACACATCTCG
CCGAAGTATCTGATGATGTACACTCTGTGTTATCGAAAGAAACTACGCTG
AAGAGAGACAAGCCTTGGGATCAAAAGAGTTGAGAGTTAATCCCGAGTAG
AATATAGGGGTAAATAAACTTACGTCCATCACGATCCTTTGACTCACCCC
ATACCAGAATGATATTCAAAAGAAAGAGTACAAAAATTAATTGAAGTCTT
GTCATCTTCAGGACAAAATAGCTACTTCCTTATNGGGTTTCTTAAATTAT
CAAGTACTARTAAAAATNNNNNNNNNNNNNCGTATAAAAATGTTAAGTAA
ATTGTTATCCCCCACCCCTTTACTTACTCGTCGTTTTCCCGATGGGTGAG
GGTCACACAAAAAAAAAAATGTGCTTTGTAAGGATCAAAGGTACTTTTTG
AGGTTTCTTAAAAGGTCTATGAGTGTTTGATTAGTATTTCCTAATCATTT
AAACTGAATATGTGTAGGTTAAAAACTATTTTCGATTACTGAAATATATA
TATTTTTTNAACTTGTATTTCTTGCATAGATTCCCCTTGTTCATTTATAT
CACTGTTGATTCTCTTGTGTACAATCAATGAGCTGGATGCGACAGCAAAT
GATGTAGTGGAGGATAAGAAAGATGAGAAGCTTCTCTCCATATTCAATGT
CGTCACATTCCCGGTTAGTTAATTTTGTGTATATATATATATTTCTCTCC
TGATATTGATGGATTAATATATGTACGATTCTAGAACACTTTTTGTACAG
GTAGTGCAAGTAAAAACGGAACTTGCTACACTGCTGATGAATGTGAAACC
AGAGGTAAGTTTCGGATTTTGAATTCAGAAAAGGAAAGTCCTGATATTTT
CCATCTAATATCTCATCTCTAGGTGGAACCGCCTCCGGATCTTGTGCATC
AGGCTATGGAGTATGCTGCRTCATTACATTRTCCTGTGGTGGAACCTCAT
CTGACAACTGCACCTATATCGAGCAATCCTCATTTACGAGTACAAGCTCA
CTTAACTCGAATCCATGCACTTACACCATATGCAAAAACAGTAATATGAT
TTGTAGGATTAGATTGGACTTTACGGTTTGTATTTATATTAAAYACAACT
AATATTTTGACTATATTTTACTTCATCTCCAGACCTTTACCATTGCAAAT
CCATTCACTACACCTGTAGGAGCTGATGCAGCKGGAACTACGATCACAAA
TGCTGGAGCCACAGGGGATTGTGTAACAGACAGTTTCAGTTTCACATCTC
CAGGAAGTAGAGGATCTCCAGTTATTTGTGGTGCTAATAGTGGACAACAC
AGTAAAAATATCTTCTAATATCAATTCCAGCATTCTTTGCTAGTATTATT
TCTACTTACTTTCATTTTGAACAGTGATTTTGGATGCAAGTGACGAGTGC
AATGTCTTAAACTTCAACATTGGCTCCTCCGCAGCCACATCCCGTTCATG
GATCATTAAGGCAACACAATATACATGYGGAGATTATGACTCTCTTGGTG
GACCTCCGGGCTGTCTTCAATACTTTACGGGAACCACTGGTAAAATTTCC
TCCTTTAATTATCCCACGTCGGAGACAACAACAACTACATCCTCCTCTCA
CCTTTCGAATCAATGCTACAGTATATGTTTCAGACAAGAGGCAACTAAAT
GCTCCATTTGCTTTGCAAGTGCAATAGCAGGACAAAATACATTTGGATTG
AGTGTAAGCCCCAATGCCGCTGCAAAAAGTGCCGTGGATTCTGAATGTAC
CTCTGATTACCTTCAAGTAAGTTATTATCTATCCGACTTTTTAGTTCATT
ATTCCTAATAATTCCCATTTTTTAAAGATTCCAAACGGAGTAGCTAAAGG
TGCAGCTGCTGCAGCAGTGGCAACTACTCAAAAGTTCTGTGGTCGTATTC
TTAATCTCAAGGAATTTGGCAGCAGAAACATCTGTSTGCAGTAAGAGAAA
CCTTCYGCTCCTTTAACAGGGTCATAATTAACATCCTCTTGTTTCTCACT
ATKTTTAGGCTTCAGTSTTCCYTTCAGAGTTGA

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