EMLSAT00000005217, EMLSAT00000005217-701064 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005217
Unique NameEMLSAT00000005217-701064
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2766supercontigLSalAtl2s2766:2451..7225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005217 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005217EMLSAG00000005217-687983Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000022823EMLSAE00000022823-731751Lepeophtheirus salmonisexon
EMLSAE00000022824EMLSAE00000022824-731752Lepeophtheirus salmonisexon
EMLSAE00000022825EMLSAE00000022825-731753Lepeophtheirus salmonisexon
EMLSAE00000022826EMLSAE00000022826-731754Lepeophtheirus salmonisexon
EMLSAE00000022827EMLSAE00000022827-731755Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto768482auto768482Lepeophtheirus salmonispolypeptide
EMLSAP00000005217EMLSAP00000005217Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005217

>EMLSAP00000005217 ID=EMLSAP00000005217|Name=EMLSAP00000005217|organism=Lepeophtheirus salmonis|type=polypeptide|length=186bp
MAXAVETSFNAHNGGNTLVPGTANGTPSTNTTTPTSNNHDNASSTTQIEG
AGPNQDSQEAVPEVDIVINNVVCSFSVRCHLNLRDIALRGVNVEYRKENG
MVTMKLRRPYTTASMWSSGVTYKMYHPKATLKIFSTGSITVTAPSVRNVQ
AAIEHIFPLVDEHKKPKTSADIKKPIPDLPQAPPPV
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mRNA from alignment at LSalAtl2s2766:2451..7225+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005217-701064 ID=EMLSAT00000005217-701064|Name=EMLSAT00000005217|organism=Lepeophtheirus salmonis|type=mRNA|length=4775bp|location=Sequence derived from alignment at LSalAtl2s2766:2451..7225+ (Lepeophtheirus salmonis)
AAAGTAAGAAGCCATGTTTTTCGAGCCTCTTCTTTCCCAAGTTTCTTCCT
CATCTTTGACCACGTTTTTTCTCTTTCTAAAAAGTCCCACCTGATCTCCG
CCTTACTTCTTCGTCTTACTTCTAAAAGAGTTACTTTCTGGATGCTGCTC
TTCGTCTTTGTGTCCATGTGTGTGTCTCTCTGTGTTAATATTTCATTACG
GGTCAGGATTATAGGGAGTTGAGAGTTACGGAATTGAGAAGGAAGGATTC
ATCTTCCTCAAAAACCACTGGCATGATTTATTACTTATTAAAATATTATT
GAAATTATAATTCGGGGAGGAGGATTTCCCAAATAAAGTATTACTTTTTA
TGTATAAAATTTAGTACTACAATTCCCTAAATAGATAAAATCCTATGAGT
CACCTTAATTCTTATGATAAACTTTGTTTGAATCGTGAGTAGCAAGTAAC
AGTATTTTTGTAGGAGGACCAAAGCTACAAATTCAGTTCTGTATGATGTT
AATGAACCAATTCCTCACCGTTCATTATTTTGTCATCTACATGGCAAACT
TGCCAACAAAGGATTGAGCTAATTTCATACATAGGGACATTTCGAGTAGT
TTTTGATCCTCTGAAACATAAACCATGACATTATATTTTATGTAAGCTCC
TAATGTGTGTTTTTTTGATACTTTAATTGTTGATGAATGAATTTACACTC
TAAGATGATATTTTAATATTTGAGATGTCCTAATCAAATACATACTTTCA
CAATATTCATTTGTTCATAAAAATGTAATAAAAAATCCCTCTGCCCACCT
CCACCAAATATAACTTAAAGAAGCGACATTTTTTTTATTGAAATTAATTG
TATATTTGTCTGGCCTGACTGGCTTTTATTTATTTATATATCTTATGTAT
ATCATAGCTATTATGTATTTATTTATCTTACTACACTATTATTCAATGCA
TTAGTTTTATGAAATGATWTRTTATAAANCTRTTTAAATKCAGCCGTATT
CATTAAAGACAAAACTTTTTGAAACTTATTTCTGATTTTTATTTCTCTTT
TGGTTTAGATGAGAACTGACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCGTTGCTCTGGAATTAG
CTGCACTTCTGCTTCTCTTATTAAAATATGTTCTCGAATTACAGTCCTCT
AAAAAGTTTTTATTTGTTTTGACGGATGTGAAGTGTGTGTCTGTAAGGTG
TGTGATATATCCAAAAAGAAAATGYATCTATGTCTTGGCAAATTAGTTAC
CTTTCATTGTGTATTTCAAAAATATTTTTATCCTGAACTATGTGTAAAGT
AAAATCCTTGTTTTCTATCGTTTTATTTTTAAAAAAGCCCAACTTTTGTT
TAACTTATTGGGACAATAAAGGCAATAATGAATTACCTTTGATGTTAATA
TACATGTATATATTTATTATATCAAATTAACTTCTTTCGATCAATAAAAA
GCAACAACTTAGTAAGTTTGCTATAATTGGAGTCTTGTGTAATAATTTGT
TTTCCCTTAAAAGTTAATTACTTTTACATATATAATACTTTTAAGGTTGC
TTCTTATTTTATATATATGAATAACATATTATTTTGTGTGTGTTATGCCG
ATATCATTTGTTTGTTTGTGGTAATATAATGATGAATAATTAATAATCAA
TACATTTTTATACAGTCTGTCTGAACATTACTGTAAAAAAGTTATAGAAA
ATATTCTTAATTATATTATCACAGCGCTCGAGGTGATGATATTGGTGAGG
TCCATCTTAAAGCTATATATTTAATAACCTATCATTTTATTTTTTATAGG
TAAAATAATTTTTCAAAGGACTAATTATTTATGGCATTTGAATCGTAACT
TGGGAGGACATCAAAATTATTTGAATCTGGGTAAATAAAAAGAAGGAAGC
GGCGATTCGTTTTTAAGTGATTTAATTAAGTAAAATAAGTGTTCACTTAA
ATGGCCMCAGCCGTAGAAACATCTTTTAATGCTCACAATGGTGGGAACAC
GTTAGTCCCAGGGACTGCAAACGGTACTCCTTCTACTAATACTACCACAC
CTACGTCGAATAATCATGATAATGCTTCATCGACTACGCAGATCGAAGGA
GCAGGTCCGAATCAAGACTCACAAGAGGCCGTTCCTGAAGTGGATATAGT
CATTAATAATGTAGTGTGCAGTTTTAGTGTTCGTTGCCATTTAAATCTTA
GAGACATTGCTCTTAGAGGCGTTAACGTTGAATATCGCAAGGAAAATGGG
GTGAGTGATATAAATTTAGTAGTAGTCAACATTTTCATTCCTCTTCATTA
GTAATTAAGGGCGCCATGTTTGGTATTCCAACTTTTGTCCCCCTTGTAAT
ATTTTGTTTGGTGTATGTATGTAAAAGTTCAAAAGATATGTAGTATAAAA
CATGCCAATAGTGGGGTGCTGATTAAGTGTTCTTATTTTTTACTTTTTTT
CCAGATGGTTACTATGAAACTACGACGACCTTATACAACTGCATCTATGT
GGTCATCAGGTAAAATTACTTGTACAGGAGCTAATAGTGAGGAACAGGCT
CGAATTGCAGCTCGACGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
TTTATTAAATTTGTCGTTAATTACTTAGTTCTTCTTATTTGCGTATCATT
GGCATGTCRAATTTAAAGACAATGAGCTATATATTTATTTCAAAATAGCA
GACAATGGCCTTATTAACAGCCTAAATTTGTAGTCCAAGGAGTTCAATTT
TTGTGATGAAGACGGACATGGAGTTAAACATCGGTTTAACGAGCTTATAG
AGCGGAGAGGGTGTCTGTTGAAGCCGGCATTCCCTTCCAGTAGCCTTTTT
TCCCAATGCAAAGAATTTATCCCTGCTTTTTTTCTTCTTTCCGAAATACT
TGTGTATTCGTCGACAACGACCTTAAAAACAAAGCGATATCGTCAGCGTT
AATTAATTAATTTCATTTAAGCCTATAAGGTTCTACTGCGGTGCTATCAG
CAAATCTTCAAGCAGAAAAAATTGGGCGTAGAGGATTTTATCCCTTGTAT
CCCAATTCTGTTGCAGCAGACCTAGTGTGAAGGGTTACTTTTTCCTAAAG
TTGGTGCTACTGTCCTGACACCATTTTGATTTATTGTGGTTGTTATATGT
AATTTTCGTCAGGAGTTGTTTCCTTTTTACATGGAATAACTATATGTATT
AACACTTTGTATTAAAAACCAAATAGGAACTAATTCGAACGAATGTATCT
TCTTTCTGTCCGACCTTAGGATCCCAAGCATCATCAATTGGTATGAATTC
TTTGTTCTGAAGACACATATTTGAAAGTCATAGTGTCGACCCTTGAATGC
ATCCATCTCTTTCTCACGGCCAATATCAAACTAACAGGATTAAAGTTTTT
TTTAAACAATTTTTATCTTACTGTCTCGATCCCTTAAAGTTTCGAGTAAA
GTGACTTTGAACGCTAACCTATTGTATACTTTCTCCATAGTCTTTTATTG
CAATGTTTTTATAACTGAAATGGGTACCGAGAAGATAATGAATGAACCTT
TTCTTCTTGTTAATTGATCTTTTCAACTAGATGACAAATATATCGGTGTA
AAACTATTTCCCATCCAAAGAAAATATATATATAGCAAAAATTTGAATTG
ACTGCTCAGTAATGATAATTATTTTAAATTATTTAGACCGGGTATTTTTG
CAGGATCACAATTTCAATCATTATTTTAATATTATGAAATTTATAGTTCC
TATCTTGTTACGCTCGATTAATTAGCTTAATATGCTCAAATTATTGTATG
TATGTTTTGTTTTTTTGTAATTTTTTCAACATTAGTAAATTCATGTTTGT
CCCGTTACAATCAAATTATTAGGCTGCTTATAATTTATTATTTCAGTTAT
GAMCCTGAATTACATCCAGGTGTAACCTATAAAATGTACCATCCAAAAGC
AACACTTAAAATATTTTCTACTGGAAGTATTACCGTTACTGCTCCAAGTG
TCAGAAATGTCCAAGCGGCTATTGAACACATATTTCCTCTTGTTGATGAA
CATAAGAAACCAAAGACTTCAGCAGATATCAAGAAACCTATACCAGATCT
TCCTCAAGCACCACCTCCTGTGTAA
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