EMLSAT00000005417, EMLSAT00000005417-701264 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005417
Unique NameEMLSAT00000005417-701264
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
H F64 Hemicentin female
  1. PreAdult2
 -Missing-
-Missing- 		15.01.2013 - 11:00
26.02.2013 - 00:00
AO F356 EMLSAT00000005417 female
  1. PreAdult2
 -Missing-
-Missing- 		16.01.2018 - 09:08
20.02.2018 - 09:08
10397&5417 KD, first eggstring EMLSAT00000010397, EMLSAT00000005417 female
  1. PreAdult2
 -Missing-
-Missing- 		16.08.2018 - 11:08
31.08.2021 - 12:48
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2921supercontigLSalAtl2s2921:9665..13131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005417 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005417EMLSAG00000005417-688183Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000023641EMLSAE00000023641-732569Lepeophtheirus salmonisexon
EMLSAE00000023642EMLSAE00000023642-732570Lepeophtheirus salmonisexon
EMLSAE00000023643EMLSAE00000023643-732571Lepeophtheirus salmonisexon
EMLSAE00000023644EMLSAE00000023644-732572Lepeophtheirus salmonisexon
EMLSAE00000023645EMLSAE00000023645-732573Lepeophtheirus salmonisexon
EMLSAE00000023646EMLSAE00000023646-732574Lepeophtheirus salmonisexon
EMLSAE00000023647EMLSAE00000023647-732575Lepeophtheirus salmonisexon
EMLSAE00000023648EMLSAE00000023648-732576Lepeophtheirus salmonisexon
EMLSAE00000023649EMLSAE00000023649-732577Lepeophtheirus salmonisexon
EMLSAE00000023650EMLSAE00000023650-732578Lepeophtheirus salmonisexon
EMLSAE00000023651EMLSAE00000023651-732579Lepeophtheirus salmonisexon
EMLSAE00000023652EMLSAE00000023652-732580Lepeophtheirus salmonisexon
EMLSAE00000023653EMLSAE00000023653-732581Lepeophtheirus salmonisexon
EMLSAE00000023654EMLSAE00000023654-732582Lepeophtheirus salmonisexon
EMLSAE00000023655EMLSAE00000023655-732583Lepeophtheirus salmonisexon
EMLSAE00000023656EMLSAE00000023656-732584Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto768866auto768866Lepeophtheirus salmonispolypeptide
EMLSAP00000005417EMLSAP00000005417Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005417

>EMLSAP00000005417 ID=EMLSAP00000005417|Name=EMLSAP00000005417|organism=Lepeophtheirus salmonis|type=polypeptide|length=811bp
MRNFIVWISLVALSILPYIKATGRITPLSRPGATACLAENLRLTDRYICD
SEGNVICVDGWSYPSKLCSEPICDMNGRGXNGKCIHPNVCACEVGWDGPN
CDECIPLGGCKHGSCNKPMECNCRPGWTGGQCNKPKCDGCVNGXCHEPYK
CICDFGWKGPNCTECTTLSNCKNGHCITHPFQCECIDGWTGLDCSKPICR
DSCHPVNGYCXSPGECICRNGWTGRDCNECVPYPGCKGTCVNNVPWTCTD
IDTIPPGNTDEWSAWGRWSTCSRTCGDGTQIRARTCADHNGVSGNCRGSS
TESRRCSISNCKIDGHWAEWTRWAPCSASCGTGSKTRFRSCSNPIPRYGG
KPCAGLDRENLKCFTKHCAIDGKWSSWQSWGQCSASCGNGHRXRARECNS
PSPAHGGLSCFGNSVDNQVCNVRECPIDASWSLWTQWTSCTKTCGEGRRE
RQRNCDGALFGGRPCTGNSTVERDMDIGLHGPSGQHVVLHVVLEIDRGEE
IVTTLLPNLEAEDVLELTLKMDHAVQIKIAQLMGXWNAWNQWTTCSATCN
GGTQTRGRTCIEPQFGGKSCSGSSNDDRACGAIKCPIDASWSIWTSWSTC
TKTCGGGSRRRSRTCTPAQNGGQPCIGTATDESTCNTQECIVIGSWAQWG
RWSTCSKSCDGGSRSRSRPCSNNNCXGNGSENGRCNAKPCGVDGMWGQWQ
FWGSCSVSCGNGVQSRRRQCDSPRPSSGGRNCRGSSVESNTCIKPSCIQV
IDGNWGQWIQWSGCSATCGHATRSRSRQCDSPSPMNGGSFCSGDNNQISS
CPNTRPCPIGM
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mRNA from alignment at LSalAtl2s2921:9665..13131+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005417-701264 ID=EMLSAT00000005417-701264|Name=EMLSAT00000005417|organism=Lepeophtheirus salmonis|type=mRNA|length=3467bp|location=Sequence derived from alignment at LSalAtl2s2921:9665..13131+ (Lepeophtheirus salmonis)
ATGCAGATCAACAAGAGTAATCAAAGATGAGGAACTTTATAGTTTGGATT
TCCCTTGTGGCATTGAGTATACTACCATATATTAAAGCAACAGGAAGAAT
TACTCCCTTGAGCCGTCCTGGAGCAACAGCATGTCTTGCAGAAAACCTAA
GAGTAAGAAATCGATCGATAAGTCATTTATTTAATCTCAAGAAAATATTA
AAAAATAATTTTTAAATAGTTAACAGATCGATACATTTGCGATTCGGAAG
GAAATGTCATCTGTGTTGATGGATGGTCTTATCCATCTAAACTCTGTAGT
GAACCTATCTGTGATATGAATGGAAGAGGATGNAATGGAAAATGCATCCA
TCCAAATGTATGCGCATGTGAAGTTGGATGGGATGGCCCTAACTGTGATG
AATGTATTCCTCTTGGTGGTTGTAAGCATGGAAGCTGTAACAAACCTATG
GAATGTAACTGCCGTCCTGGCTGGACTGGAGGRCAATGTAATAAACCCAA
ATGTGATGGATGTGTCAATGGATGSTGCCACGAACCTTACAAATGCATGT
ATGTAGTATTATTATTTCTAGTGGTCATGAATCCAAACTCATGATTGTAT
TTACGTGTTCCTTTATTTATAGTTGTGATTTTGGATGGAAAGGACCCAAC
TGCACAGAATGTACAACATTGTCTAACTGCAAAAATGGACATTGTATTAC
WCATCCCTTCCAATGCGAATGTATCGATGGATGGACTGGCCTCGATTGCT
CCAAACCTATCTGTCGGGACTCTTGCCACCCTGTAAATGGATATTGTCRT
TCTCCAGGAGAATGTATCTGTAGAAATGGCTGGACTGGAAGAGACTGCAA
TGAATGCGTTCCTTATCCAGGATGCAAAGGAACATGTGTCAACAACGTTC
CCTGGACTTGTACTGATATTGATACAATTCCTCCTGGAAACACTGATGAA
TGGAGTGCATGGGGTAGATGGTCAACCTGTAGTAGAACTTGTGGAGATGG
AACACAAATCAGAGCCAGAACATGCGCTGATCATAATGGTGTTAGTGGAA
ATTGTAGAGGAAGTTCCACTGAATCTAGACGATGCAGCATTAGTAACTGC
AAAATCGGTAAACAATTGCATTTATTGACTATCAATCATACAGTAATACC
ATTGATTATATTTAGATGGACACTGGGCTGAATGGACGAGATGGGCTCCT
TGTAGTGCCTCATGTGGAACTGGAAGCAAAACACGCTTTAGATCATGTTC
CAATCCTATTCCTAGATATGGAGGAAAACCTTGCGCTGGACTTGATCGTG
AGAATCTCAAATGTTTTACTAAACATTGTGCAATTGGTAAGACACTATTA
AAAGAATTACTCAGATGTATGCTGGTTTAAAAAATTAAAAATTCATCTAT
TTGTAGATGGTAAATGGTCCAGCTGGCAATCATGGGGACAATGTAGTGCC
TCTTGCGGAAATGGACACAGGCAWAGAGCCAGGTAACATAGAAAAAATCT
CATTCATTTCTGAAAAGTTGACTTAAAAAATAAATGATTTGATATTCTGT
AGAGAATGTAACTCACCTTCTCCAGCCCATGGAGGATTGTCTTGTTTTGG
AAATTCTGTAGATAACCAAGTATGTAATGTAAGAGAATGTCCCATTGATG
CATCATGGTCTCTCTGGACCCAATGGACATCATGCACTAAAACTTGTGGA
GAAGGACGAAGAGAAAGACAACGTAATTGTGATGGAGCACTCTTTGGAGG
AAGGCCATGCACAGGCAATTCAACTGTGGAAAGAGATGTAATTCCTTGCT
GGATTCAAGTAGTCTGTTCCCTTGGTAAGTATTGACCCCACAGAAATAAA
CATTTGTGTATACTTACTTGATATGACTTAATCTTTCAATGATTAGATGG
ACATTGGTCTTCATGGGCCCAGTGGTCAACATGTAGTACTACATGTGGTG
CTGGAAATAGACAGAGGCGAAGAGATTGTAACAACCCTGCTCCCAAATTT
GGAGGCAGAAGATGTGCTGGAGCTGACTTTGAAAATGGACCATGCAGTGC
AAATCAAAATTGCCCAATTGGTGAGAATTCCCTTTTTTTATATTACGTTT
AAAGGCAATAACTATCACTTGATCCAACTTTATTTCAATTCAGATGGGAA
ANTGGAACGCCTGGAATCAATGGACAACATGTAGTGCCACATGCAATGGT
GGAACTCAAACCAGAGGAAGGACATGCATTGAACCACAATTTGGTGGCAA
GTCCTGCTCTGGAAGTTCCAATGACGATAGAGCTTGTGGTGCCATCAAAT
GTCCCATTGGTAAGTCATAAAACATGATGAAATACGTCAAAGTCATATTA
ATCTTGTTAACTCTCAGACGCTTCTTGGTCAATTTGGACAAGTTGGAGCA
CATGTACCAAAACTTGTGGAGGTGGATCAAGAAGAAGATCAAGGTAAACA
CTACATATTTGCATTGTGTCTAATTTTCCTTTTTCTTTTATTATTCAGAA
CTTGCACTCCAGCTCAAAACGGTGGTCAACCCTGTATTGGAACCGCTACA
GATGAATCAACTTGTAACACCCAGGAATGTATCGTTAGTAAGTAGATTCC
TAATAATTAACTTGACATAGTATTCAATTTTTAACTCGATTTCCTAGTTG
GCTCATGGGCTCAATGGGGCCGTTGGTCAACTTGCAGTAAATCATGTGAT
GGAGGCTCTAGATCAAGATCAAGGTAATTAATCAACAAGTAAAGTTCTAC
ATAGTTATTATTCCTAAAATTCAATAGACCCTGCTCTAACAACAACTGTN
TTGGAAATGGATCTGAGAATGGAAGATGCAATGCTAAGCCCTGTGGWGTT
GGTAATACTAACTTATATATTTTTTAAATTGATAAAACCACAAATCATAT
TCAACTATTTAATTTTAACAAGATGGAATGTGGGGTCAATGGCAATTTTG
GGGATCTTGTAGTGTAAGCTGCGGCAATGGTGTACAAAGCAGGAGAAGGT
ATTTTGTATTTATAACTATTTTTTGCAAGTTCTTTGTTTCAATCCTTTTC
CATAGGCAATGTGACTCACCAAGACCATCCAGTGGAGGAAGAAATTGTAG
GGGATCATCCGTGGAGAGTAACACTTGTATTAAACCTTCATGCATTCAAG
GTTAGTAACTAAATAATGTTTAGGTACTGTACAATGTACTTACATCTATG
TCCTTCTTGGTTTGTCTCTCTAGTTATTGATGGAAACTGGGGCCAATGGA
TTCAATGGAGTGGATGCAGTGCAACATGTGGACATGCCACTAGGTCTAGA
TCCAGGTACATAAAATTAGGCTTAAATTCAATTCCTGGTCTATTWCTCCT
TTTTTTTTTTTAAGGCAATGCGACTCACCTTCTCCAATGAACGGCGGTAG
CTTCTGCTCAGGAGATAATAATCAAATATCTTCTTGTCCCAATACACGTC
CCTGCCCAATTGGTATG
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