EMLSAT00000005950, EMLSAT00000005950-701797 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000005950
Unique Name	EMLSAT00000005950-701797
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s321	supercontig	LSalAtl2s321:238951..244944 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000005950 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000005950	EMLSAG00000005950-688716	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000025939	EMLSAE00000025939-734867	Lepeophtheirus salmonis	exon
EMLSAE00000025940	EMLSAE00000025940-734868	Lepeophtheirus salmonis	exon
EMLSAE00000025941	EMLSAE00000025941-734869	Lepeophtheirus salmonis	exon
EMLSAE00000025942	EMLSAE00000025942-734870	Lepeophtheirus salmonis	exon
EMLSAE00000025943	EMLSAE00000025943-734871	Lepeophtheirus salmonis	exon
EMLSAE00000025944	EMLSAE00000025944-734872	Lepeophtheirus salmonis	exon
EMLSAE00000025945	EMLSAE00000025945-734873	Lepeophtheirus salmonis	exon
EMLSAE00000025946	EMLSAE00000025946-734874	Lepeophtheirus salmonis	exon
EMLSAE00000025947	EMLSAE00000025947-734875	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto775079	auto775079	Lepeophtheirus salmonis	polypeptide
EMLSAP00000005950	EMLSAP00000005950	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s321:238951..244944-

protein sequence of EMLSAP00000005950

>EMLSAP00000005950 ID=EMLSAP00000005950|Name=EMLSAP00000005950|organism=Lepeophtheirus salmonis|type=polypeptide|length=950bp
MFVRFFDCVNPNNKDDHHLIVIPPEDSQYSKTSDYYWGSIHENKTNVVGS
WDPQNGGVQQGAFGFGTAISLPLESCLIDDEWKRNEKLLPCVTNPKDCPK
GLSIAVWEKLIFPLDVLAKNSKSSPIRTLISTGVSYNVFTEVSHPGFGIF
RQGYDLEVVVSTGVNVWSLRIAGQVYNDSWTNIGVRWEKTSRNSGDVGGL
EVFINLNLVGRLVHPISTDSGRSTFSPILAKIDNDCSAPVLMVGCSWNYD
DQKFEHFFNGIIDEVTIWGKSLKKNSTDSYRNINPKQFKAMLKNIDLENP
YDASLAASVLEAMLIPSPTEASLFPTRTTTMPPSTTTTTTTSTMKIPSSN
KSQNSSSINAKYSPQLSPLLTKSREELAAAQLSLQDALLSMVKGPSNKLH
FELPKNVEIRFSLVAIIFKILSGADEENVAKWKAVFESNPRHEGPPLIFR
HLHEYILEYMSVIDTTSYERSTYFDPRTRIFNISTSGQDFVFSAYKLAAD
KLSSQVRLTYPNYKSYEWETNYEKFGEPRDEFSVPTGMFNDKKECQNLPI
SIIMSVHNEYRQITPKRRNPFYIKSKKWFLDSKVFIAKFQINLDPSLPNP
ALLDKCEISPNYMQWNPLRATFYHKXAIKVFPFWSRKLRRKREINPDDYK
YNKNNIFSNFRPTGIERRTCVLWNEDFDENGAWDPRKCEAVTSQSDMTVC
ECKEWGTMAVIAELTEEIPGSSSCSMSYNIVKYIGLTLSLYVWDMFHLLR
AQTSFAWLLSMICMVLSEXPAINESINSNIVIGLLLIYFYTCTLLWLLNE
SHATFKAITSGIINKRFIIYVPFGYGVSLIPVGLAFVLYNSELGSDPLCF
ISYNNKTKSWFFYAFYALIGTSIILNIISLLNLNTPQTKSTKVVPQIKAQ
TFGLSLLSLGFLGLNSIWFLKYTYGGKNILGFGLEWGCIFDTITGWFGVR

mRNA from alignment at LSalAtl2s321:238951..244944-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000005950-701797 ID=EMLSAT00000005950-701797|Name=EMLSAT00000005950|organism=Lepeophtheirus salmonis|type=mRNA|length=5994bp|location=Sequence derived from alignment at LSalAtl2s321:238951..244944- (Lepeophtheirus salmonis)
ATGTTTGTGCGTTTTTTTGATTGTGTTAGTAGTTTCCTTTATATTTGAGT
AGACTAATATTTAAGGCATTTCATTTCAGGAGTCCACCCAAACAAATACA
TATTTCATATTTCGAAACTATCATTTATAAACTTTTGTACTCTTTGACAT
ACCTACTTATATTTACCTATTATACGAGACTTATTAACTTTAATCCCTCT
TTTATCCTCTCTTCACAGATCCGAACAACAAAGATGATCATCATCTCATT
GTGATCCCTCCTGAAGACTCTCAGTACTCAAAAACATCCGACTATTACTG
GGGCAGCATTCATGAAAACAAAACAAATGTCGTTGGTTCTTGGGATCCGC
AAAATGGTGGTGTTCAGCAAGGTGCATTTGGCTTTGGAACTGCTATTTCC
CTGCCTCTCGAGTCTGTAAGTTCATAATTAATCATTTTTATAAACAGATC
TATTTTTAAATAGATTGAAATTTCATTTTATGTGCATAAATAAATCATTT
TCAAAGAGCCATATGCAAATATTTAAAGGATTTGTACATAGACAATTTGT
TGGGATTAATGAGTGTATATAAAAGTCCTTTGTGTAGATATCTGAGGTAA
GGACATAGACTCGACTTGACTGGAGTCCATATTTTGATACTTTCGACTCG
ATACTTGACTTGTGCTCGAAAAATATGACTTGCAAATCGACTTAGACTCT
AAAGTCATTTCAATTTTACACTGGATACAAGGTACTCTTTAAAGTATCTT
ATATTTTATGAGGGCTTGATTTGGACTCGATGAAAATATTCTGGGTCTGA
GGCTTGATTAGATCTAGTGAGTAAAGGATTGAGACTCGACTTGGACTTGC
AATATTATCACTTTTATAGATATCAGCTCGAAAACTAACTCTCACATACG
TGGAGAAAATGGGATTTCAACTTATTTCTAATTAGACTCAAATAATCATG
ATTGTATATATAGTGTCTGATCGATGATGAATGGAAAAGGAATGAAAAGC
TTCTTCCATGTGTAACCAACCCCAAGGATTGCCCAAAAGGATTATCCATT
GCCGTTTGGGAGAAGCTAATTTTCCCTTTGGATGTTCTTGCAAAGAACTC
AAAGAGTAGCCCAATAAGAACTCTGATCAGTACTGGAGTTTCCTATAATG
TCTTTACAGAAGTATCACATCCGGGATTTGGGATTTTTAGACAGGTTTGC
ATTCTACTTTTGAATATAATTCTTGGTCATTTTAAGTTTGTTTTTCATAT
TCAGGGATATGATCTTGAAGTGGTTGTAAGTACTGGAGTTAATGTTTGGT
CCTTGAGGATCGCTGGACAAGTTTATAATGATTCATGGACAAATATTGGT
GTACGATGGGAAAAAACAAGTAGGAACTCTGGAGATGTTGGCGGACTTGA
AGTTTTTATCAATTTGAATTTGGTGGGTAGATTGGTTCATCCAATATCTA
CTGATAGTGGGCGTTCCACATTTTCACCCATTCTTGCAAAAATTGATAAT
GATTGTTCAGCTCCTGTTCTTATGGTTGGGTGTTCATGGAACTATGACGA
TCAAAAATTTGAACATTTTTTCAATGGCATCATTGATGAAGTCACAATTT
GGGGCAAAAGTCTCAAGAAGAATTCAAGTCATGACTTAGTTCCTCTTTTT
TATGGGGGATACTGTGAGTTTAAACTTATTTATAAAAATTAATATGTAAA
TTGTAGATAGTTAACCTTTGATTTAAATATTGAACACTAGCTGACTCCTA
TAGAAACATCAATCCAAAACAGTTTAAAGCAATGTTGAAAAACATTGATT
TGGAAAATCCATATGATGCATCTCTGGCAGCCTCGGTTTTGGAGGCCATG
CTTATACCCTCTCCTACTGAAGCCTCCCTTTTTCCTACCAGAACAACTAC
GATGCCTCCTTCAACGACCACAACTACTACAACTTCTACGATGAAAATCC
CCTCCTCAAATAAATCTCAAAATTCGAGTTCAATAAATGCAAAATATTCG
CCGCAATTATCCCCCTTGTTGACAAAATCAAGGGAAGAGTTGGCGGCCGC
GCAATTATCTCTTCAGGATGCACTTTTGTCCATGGTTAAAGGACCTTCCA
ACAAATTGCATTTTGAGCTTCCTAAGAACGTTGAAATACGCTTTTCACTC
GTCGCCATTATATTCAAGATCCTTTCTGGAGCTGATGAGGAAAATGTAGC
CAAATGGAAAGCTGTATTCGAGTCAAATCCCAGGCATGAAGGGCCACCCT
TGATTTTTAGACATCTTCATGAATATATCTTAGGTATTCTGTTTACTATT
GTAGAAAATGTCGGTTTTAGAATACGTTTGATCTTTTTTTAAATGGCGTG
AGAGTCTGTAGTTTGTTAGTTAAACTAATTGTTTAAAAAAATGCTGAGAA
AATTTTTCATAGGGCTCTCTATGTTTGTAACACACGCTTATGTTTCATAT
TAAATAATATTATTATTCCGGGACTTTATTATTTTGTCGTAAGACGGTGC
CATTTTCTGTCGCAAAGTAAAAAACAAGATTTTTTTATTTAGAACCTAGT
CTCTTGTCACAGAGCAATTCTAACTAAAACCGACCCTGCTTGTTGATAAT
GAATTCATAGTTAACCTTTTTTTTAATGTTCCTACCTAGAATATATGAGT
GTTATTGACACAACTTCATATGAAAGATCCACATACTTTGATCCAAGGAC
CAGGATCTTCAATATTAGTACTTCAGGACAGGACTTTGTTTTTTCTGCTT
ACAAATTAGCAGCAGATAAATTATCCTCACAAGTTCGTTTAACCTACCCC
AATTATAAAAGCTATGAATGGGAGACGAATTATGAGAAATTTGGAGAGCC
CAGGGATGAGTTTTCCGTGCCTACAGGGATGTTTAACGATAAAAAAGAAT
GCCAGAATTTGCCAATTTCGATCATAATGAGTGTTCACAATGAGTACCGT
CAAATTACTCCTAAAAGAAGGAATCCCTTGTAAGTAACATTCATTGAAAA
CTTTTTTCTATGCCCACACATATATGTCGTTGATGATAGTTACATCAAAA
GCAAAAAATGGTTCCTTGATAGTAAAGTATTCATTGCCAAGTTTCAAATC
AATTTGGATCCATCTCTCCCAAATCCAGCTCTCTTGGATAAATGTGAAAT
ATCTCCAAATTATATGCAATGGAATCCTCTACGAGCAACATTTTATCACA
AGKAAGCCATTAAAGTATTTCCATTTTGGTCTCGAAAGCTAAGACGAAAG
AGAGAAATTAATCCAGATGACTACAAGTATAATAAAAACAACATTTTCTC
AAATTTCCGTCCAACAGGAATTGAGCGACGAACCTGTGTACTCTGGAACG
AGGACTTTGATGAAAATGGAGCATGGGACCCACGGAAGTGTGAAGCAGTG
ACGAGTCAATCCGACATGACCGTGTGTGAATGTAAGGAATGGGGAACAAT
GGCCGTGATTGCGGAATTAACAGAGGAAATCCCAGGATCTAGTTCCTGTT
CCATGAGTTATAATATAGTGAAATACATTGGACTTACCCTAAGCTTGTTT
AGTCTTGGAGTATTTATTGCTATTTGTTTCGTCTCAAAGTAAGTGATTAC
ATATGCGCGGGTTAGCTTTCTTTTAAGAGCTCATAGTCGCTGCGTCTTTT
GAATTTAGTAACCTGACACAATCCTACCCGTAACTTTTTAATTTGAGTAG
TACGGGATGTGACATCATAATTTCCTTTTTTAGAATGTGTGGCAATCAGA
CTGTAGAAGTAACTACAAAGTTGGCGTGGATTCATTCTACACATGACATT
CAAAAGTTTTTTTTGTTTTTTTATGGAAATAAAGCCAGTCGTTGTCATGC
CGTCAAAAATAAAAATKCTGCCATAATGGTTTGATAAAATATTTTCTCCC
GAGTTTTTTTGGTGCAATTTATTAAAATCAGTTAATTTCTTACATTTAAA
AAACGATTTTTTCAATTCCTTTTCATAATTTAAAAGAGTTCAAAAAACTT
TGAACGCTAGTAAATCCATAGACATTGATGCCAGAGAGCTGAAATTTATG
CCATAAAATTTAGTGTCATTCAAGAATTCTAAATAAAGTAATTATACCTG
GATTTATTAATTAAATACAAGTATTTTTGAGACCTTTACAAAATATCCAA
TAACTAATTATCTTATGAATCCATAATTATTGTTAATAAAATTTTACATC
TTTTTGTCAAAATTAATTAATCCCCTGACCCGATTAGTAAAAAATATTCA
AAGAAAAATGAAAAAATCACCTGTTATTAAAACATTACTTATCCAATATG
ATTTTAAAAATTCCTTAAAACAAAACAATAAATGTGTGTTATTATTGTGA
AACAAAACTGAAACGTTGCTGATTAATAAAACTTGTTTATTGTCGTTTTA
AAAAGAAGGAGGTTATGTTCTCGCACACTGTATATGACAAAAACCGGATA
ATACTTCATTATAAATAGTAAACAATAAAAGAACATATTTTTYCTGAAAC
TGCTGATACAAAATATAGAATCCAAACTGCAGATAATCTGGGGGTCCGAC
GAGATAAAAGTCAACTCGTTCATCACTAATATGTATGTGGAGGTTTGTTG
AATTCATTTTCTTTTTTTTGTATGAACCTAGATATGTTTGGGACATGTTT
CATTTACTGCGAGCACAGACCTCCTTTGCTTGGCTCTTATCCATGATTTG
TATGGTATTATCAGAATTKCCCGCCATCAACGAGTCCATCAATTCAAACA
TTGTCATCGGACTACTCCTCATCTACTTCTACACGTGTACACTCCTATGG
CTCCTTAATGAATCACATGCAACATTCAAGGCCATAACATCCGGAATTAT
CAATAAACGATTCATCATCTACGTCCCCTTTGGCTACGGAGTGTCCCTCA
TCCCAGTAGGTCTAGCCTTTGTTCTGTATAACTCAGAACTCGGCTCTGAT
CCTCTTTGTTTCATCTCCTACAACAACAAAACAAAGTCATGGTTCTTTTA
CGCCTTCTATGCTCTGATCGGAACATCCATTATACTCAACATCATTTCTC
TACTGAATTTGAACACTCCACAAACCAAAAGCACAAAAGTAGTGCCCCAA
ATTAAGGCACAAACCTTTGGGCTAAGCCTTCTCTCGTTGGGATTTCTCGG
TCTCAACTCTATTTGGTTCTTAAAGTATACTTACGGAGGGAAGAATATAT
TGGGATTTGGTTTAGAGTGGGGTTGTATTTTTGATACGATAACAGGATGG
TTTGGAGTCGTAATGTTTCTCCTTTTGGGACTGGGTTCCCCACGGTTTAT
AAATGGGTTTAAGGGGGAGGCAGAGYAGAGGGTAAGGATGGGTTTTCATA
AACATAACTATCTATTAGGGCGCCTTGTTTTTCAAGTTTTTTCGATATTT
GATTACTGTTAGTCAGGAAAAGTTGTCATGCGGTAAAAAAAAAACGACTT
ATCCTATTTTTGGTTCGCACATATTTGTCAAAGTTTGAAAAAAGAGCCAA
AATTATTTATTTAGACAATAAAGATTAAAGTATTTATCTTTATTTTACTT
AAAATCATTTTGGTAGGCATTATTCTAACCTAATAAAATTATATATAAGT
TTTTCTTTTCTAAAATCCTCCTATGGAGCAAAAAGGGGAAAACAGTTTAA
TGAAAAATTTTCCCTTATTTTTTTAACAATTTTAGAAGGAAAGAATCATT
TTATCATTTTAGAAAATAACTTTTTTACCATAGTTTATAGCTTTCCAAAA
TGTTTAACAATTTTTTTTATGCAAAATAATAATCAAGTTGTATATTTTTA
TCTTTATTGACTAAATTACGAATTTTGACCTTTCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGAGT
AAATGGCAATGATTATATGCTTTTTTTATATTTTTCAGAGGTAA

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