EMLSAT00000005995, EMLSAT00000005995-701842 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000005995
Unique Name	EMLSAT00000005995-701842
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s324	supercontig	LSalAtl2s324:157329..162414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000005995 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000005995	EMLSAG00000005995-688761	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000026150	EMLSAE00000026150-735078	Lepeophtheirus salmonis	exon
EMLSAE00000026151	EMLSAE00000026151-735079	Lepeophtheirus salmonis	exon
EMLSAE00000026152	EMLSAE00000026152-735080	Lepeophtheirus salmonis	exon
EMLSAE00000026153	EMLSAE00000026153-735081	Lepeophtheirus salmonis	exon
EMLSAE00000026154	EMLSAE00000026154-735082	Lepeophtheirus salmonis	exon
EMLSAE00000026155	EMLSAE00000026155-735083	Lepeophtheirus salmonis	exon
EMLSAE00000026156	EMLSAE00000026156-735084	Lepeophtheirus salmonis	exon
EMLSAE00000026157	EMLSAE00000026157-735085	Lepeophtheirus salmonis	exon
EMLSAE00000026158	EMLSAE00000026158-735086	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto773518	auto773518	Lepeophtheirus salmonis	polypeptide
EMLSAP00000005995	EMLSAP00000005995	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s324:157329..162414+

protein sequence of EMLSAP00000005995

>EMLSAP00000005995 ID=EMLSAP00000005995|Name=EMLSAP00000005995|organism=Lepeophtheirus salmonis|type=polypeptide|length=553bp
MAPNLQSCWTPCFWFPDVRSGSFASAFYTFFASIFCSVHTIYVMRGGDAS
QVYLPFFETDLTKMDLEASGGFTIFYFVFLCMFSILLAIGISTNIRGLMI
PWMISLGIAITFQAMFGLWLIFGYYIYLEVIMAAILCWTWMSLNIYALQV
VRSHYYNIKFSQTPDIEYFDYISSDEGLNMVDEKTNLLKNDEESCYRGDD
TKLTPTSYSTHDERIDSALENDYIPPGEEALPSSITNHTYLIGTLLSVFA
GITFTSANVIQKYAPNLNFWDLLFVRAVSQLIVIGGLSFWCGYNPIGPTG
SRSRIYAQGFMGGVLLLCLFVAVKHIPLGDASAIFFSAPFFTMLFSSCML
NEHFGLFRISVSTIIIVGVLLLCRPPALFPPESLGSKLHNETGNFFGTIC
AWTVPILSAIITILNRQCKHVPFLVLTFWFGVGALFVSLIGMNIPFLHSS
NVYSGNIFNFSPLEWVYTATIVTLGIIGNIVMTIALKFISPARAMVFRSF
EVIANYILXAXLFXKXAMPFHVTDPIGALLIVISVMLMGLETMIQKRYSW
KYL

mRNA from alignment at LSalAtl2s324:157329..162414+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000005995-701842 ID=EMLSAT00000005995-701842|Name=EMLSAT00000005995|organism=Lepeophtheirus salmonis|type=mRNA|length=5086bp|location=Sequence derived from alignment at LSalAtl2s324:157329..162414+ (Lepeophtheirus salmonis)
AGGCAGTGCAATTGGAAGTCGAGTTAAAAATTTGCTGATTTAATAATATC
TTAAATGAACGCAATATAGCGATGGGCATAAAAAAGGTGTCTAATATGTG
GATAGGTAAAAGATGTACATAGCTTTTTTTTCCATTGCCAATGGAAAGGA
TTGTTGAATACCATTTGATAAGAGAGTTCGAGAGTGTAATGATGATTGGA
TCGAATGCAGCAGCATTTGTTTTAAGTATTTATTTTTTATCATCCGAGGC
CAGTTTTTGTAACAAAGATGAATGTCTTAACTCAGTGGGGAAAGATGACA
TAGATACGCCCTATGAAATAGATTGGAATCTAAATGAATTAGACCAAAGG
TTTGTTATCTAAACAATTTAATGGTTAAACTATATATTGAATCGGCTAAA
CGTGATATATTGTATGTAACTTTAGTCTTAAATAATTATACTGTATTTTT
GCCTTTCTAGAGATCCAAAGCTCATTTCCATTATAAGAGAAAAGTATCTT
ATCCCTCCATCAGAATCAAGTGATTATAATTTCACAGTACCTTTGGATCA
ACTAAACTATAAAGGTCAATGCGGTCAACCCACTCAAATTGATAGATTTA
TATTTAAGAATTCACTTAATGCAAAAAACTCTGAAGATAAGTATTTCTTT
ATTGAGGCAGGKGCATTTGATGGTGAAGTTATATCAAATTCTTTACACTA
CGAAATTCGTCGTGGTTGGAATGGACTTCTTATCGAGCCCAATCCAGACT
ATTTTTCAATACTTAAGCAAAAGCAAAGAAAAGCCTGGCTATTGAACAGA
TGTATTTCTACAAAGAAGACTCCACAAATTGTGGAGTTTGATGCTTCCGG
GCTTTTTGGGGGTATTATTGGAAGTAAAGATAGACTTCCAGGAAATGATT
TTGATCCCACCGTGTATAGACGTAGAATAAGAGTTCAGTGTTTCCCTCTA
TACTCAATTATAATGGCTCTTGGAAATCCAGCGATTCATTATTTGAGTTT
AGATATAGAAGGGGCGGAACTCCCTGTTCTACGAACAATACCTTTTGAGA
ATGTGGATATCAAACTATTGGATATAGAGAGTAATCACATGGGTGAAATA
TTTGATGGAAGCAAAGTGGAGCTAGTTCGAACTCTGGCTGATCGAGGATA
CCGATTTGATAGAGACATTTGTCATGATAGTATTTTCATAAAATACGGCT
TTAAAGTGAATAAAAAATAAGTCATATCTTCAACATTTATATTTTCATTA
TAACTATACAATTTAACAAAACTAAGACTAATAAAGATTCTATTTCATAA
TATAACTTTGACATCATCATATTATCAAAAATACATAATACCTATATGCT
TTATCTTACCTGTCTTGCCCCATAATGGTTGATACAGGTATACAACTCAG
TTGCTCTAACATAAACAATTTCAAAAATCTGTGAAATGGCACCAAATTTG
CAGTCCTGTTGGACTCCTTGCTTCTGGTTTCCAGATGTACGGAGTGGGAG
TTTTGCCTCGGCCTTTTATACGTTCTTTGCATCCATATTTTGTTCTGTAC
ACACCATTTATGTCATGCGGGGTGGAGATGCATCACAAGTTTACCTACCC
TTCTTTGAAACCGACCTAACCAAAATGGATTTGGAAGCCTCTGGTGGGTT
CACGATATTCTATTTCGTGTTTTTATGCATGTTTTCCATACTTTTGGCAA
TTGGTATTAGTACAAATATTCGAGGTCTCATGATTCCATGGATGATTTCG
TTAGGTAGATATTCTTTAATCTTCTCTATTCTACATGAGTCATGACATAT
TTTTTTCCTGACAGGAATTGCTATTACCTTTCAAGCAATGTTTGGCCTCT
GGCTTATCTTTGGATACTATATCTATTTGGAAGTAATAATGGCCGCTATT
TTATGCTGGACGTGGATGTCTCTAAATATTTATGCTCTACAAGTTGTCCG
ATCTCATTATTACAATATCAAATTCAGTCAAACACCAGATATTGAATATT
TTGATTAGTACTTATGTGTACTTCCCATCTGAACCATGCTATTTTTATAT
TTTTTTTTTACCTTTGCGTATATTATATAAAAACTTTTATCATTCGTGAA
ATATAACATATGTAAATAATCATTGGTAATAAATAACTTTTGTCATTAAA
TTATATAGGCTATATATAATATTCAGGATTCAATGTTAAGTTGCTAACTT
GTTTAATCTTCTTTCGATCCATAAAAACATCACATTTGGAAATTAGATTT
AATTATTAACCTTGGTGGTGAACACGAAATGTTGTTAATGCGTCGTTTGA
GTATGGAAAAAGTTGAACCTGATGATGCAAATTAACATTTTTAAGGAAAT
AAATTAGTTTGTTATAGAAGGGKGTCGCAGGGGGTGGGCGGNGGGGCTGK
ATTTACCCCCCCCCCCCCCTTAAATTTAGGAATTGTTGCTTTTTACTAGA
AATTTAATATTTCAAATTTTAACTAATTCCGTAAAACCGAGTCCCCCCAA
AATATCATCCTGCAGACGCCCTTGAATTATCATAATCTAATATGTGCATT
GACACAAAAGTATGCCCCCATGTTGAAACCATGAAAAAATTTCAGGTATA
TCTAAAGATGAAATCAAGTTAATAATATAGAATTATCAATATTAGTAAAC
ACTCTAGTGTCAAACAACTCACCAGCCTAAGATATTCAAATTACTAAATA
ATAATTATTGATATCAATGTGAATATAGATGATAGTTCGTTTGAAGTGTT
CGAATGGTATATTAATTGGGTATGTCAATTATGGCCACAATGTTATTGTT
TTTCCTTCCATTTTTCAGTATGATAATAATCAATTCCTCACGGATATTAC
ATATATTGTATATGTATAATCTTAAAGTTAAAGAAACTTATTTTTAAACA
CAAACTGCAAACTAACTTCTTCCTGATAACGAAGGATATATTTTTTTTTC
AAACAGATTCATTTCGTATTTGTCTGTTCTAGTATTAGTTCAGGTAAAAT
TGTATTTCTTACATTTATATTAATTTCCCAATCCACTCTCCGTTGTAATC
TTTTATAGTTATTCAATTAAGACGAAGGATTGAATATGGTGGACGAAAAA
ACGAATCTCTTGAAAAATGATGAAGAATCATGCTATAGAGGAGATGATAC
TAAATTGACTCCAACAAGCTATAGTACTCATGATGAACGAATTGATTCCG
CCTTGGAGAATGACTACATTCCACCAGGAGAAGAGGCTCTTCCGTCCAGC
ATAACTAATCACACATATTTAATTGGCACCTTATTATCCGTTTTTGCTGG
AATAACATTCACATCAGCCAATGTCATACAAAAATATGCTCCAAATCTCA
ATTTTTGGGATTTGCTCTTTGTTCGTGCCGTATCCCAGCTGATTGTTATT
GGAGGACTATCCTTTTGGTGTGGTTATAATCCTATAGGTCCTACTGGATC
TAGATCACGGATTTATGCTCAAGGATTCATGGGAGGGGTTTTGCTATTAT
GTTTGTTTGTAGCAGTCAAACATATACCTTTAGGTAATTTATAGTTACTT
CTCGAAAAACATTTATCTCTCATTCGATTTTTTTATGAAGGTGATGCATC
TGCAATATTCTTTTCTGCTCCATTCTTCACCATGCTGTTTTCATCTTGCA
TGTTGAATGAACATTTTGGTTTATTTCGGATATCTGTCAGTACAATTATT
ATAGTGGGAGTTCTTCTTCTTTGTCGGCCTCCAGCTCTCTTTCCTCCAGA
ATCATTAGGATCTAAGCTCCACAACGAAACCGGAAATTTTTTTGGAACTA
TTTGTGCTTGGACAGTACCTATATTGTCGGCAATTATCACTATTCTCAAC
AGGCAATGTAAACATGTACCTTTTTTGGTTTTAACGTTTTGGTTTGGGGT
CGGCGCACTTTTTGTATCATTAATTGGTAATTTTTTTAAAGACTTAAATA
TTTATTTTTAGCTCTTAATATTTTCCTTATCATAACTTAGGAATGAATAT
ACCATTTCTACACTCTTCAAATGTGTACAGTGGAAATATTTTTAACTTTT
CACCTCTAGAATGGGTTTATACTGCAACCATAGTGACATTAGGTATCATC
GGAAATATTGTCATGACTATAGCTCTAAAGTAAGGCCTTACATCTTCAAA
TAATTATGTACACTTTTAATCCTTATTTCCTCTCAGATTCATTTCACCAG
CACGTGCAATGGTTTTCAGAAGTTTTGAAGTCATAGCAAACTACATTCTA
MAAGCTWCTTTGTTCTMAAAAKTAGCCATGCCCTTCCATGTAACAGATCC
TATTGGAGCTTTGCTCATTGTGATTTCAGTTATGCTAATGGGACTTGAGA
CAATGATTCAAAAGCGATATTCTTGGAAATATCTTTAGGCACTACAGAAA
TTAATATATCTATGTATAAGAAGACTACACTCCAGAAATAAATCCTTTCA
TTCATTAAGGCCTAAACTATCAACATATTGGGTATATAAATTTTTTAAAC
GTTCTTTTTCTCAAATATAAAATGATAATATAATGTGTATATAAAAATGA
ATATTACTGACAAGTTCAACATTCCTGCAAGGATATTACATTCCAAGAGC
GTTTTTATGATTTAACATGCAGTTATTTCAGCTTTAGTAATAATTTTTGT
GAAATAAATATATTCAACTAATACTCATCCAATACTATTATTTTGTTAAT
AATCAAAAATTTTCTTTCTTAATGATTCAATAAAAATATATTGTCTAAAT
TCAGTAACTACATACATTTAAATTAACTAAAAAAATTGTCAATTGAACAC
ATCATCTTGCACAAAAATTAAAAAAAACAAAATAATCAACAATAAATTGA
ACAAAGAGAATTACACAGTAATGAAGTACATTAATTATTATCTTTTTTCG
TAAAACTATCCGATGCAAGACCACTTGATTTAACTTTATCGATGCCTTGA
ATTGAAGCTATTTTTGATTCACATAATGTATTCTTGTATCGAAATTGATA
ATAAGATGCGAATGAAATTCCTGATAATAGTAGAATCCCAACAACGTAAC
TCTTCCAATAACGCCGAAAGTCGATTGAAGTTGCAA

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