EMLSAT00000006041, EMLSAT00000006041-701888 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000006041
Unique NameEMLSAT00000006041-701888
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s327supercontigLSalAtl2s327:367648..370815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000006041 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000006041EMLSAG00000006041-688807Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000026338EMLSAE00000026338-735266Lepeophtheirus salmonisexon
EMLSAE00000026339EMLSAE00000026339-735267Lepeophtheirus salmonisexon
EMLSAE00000026340EMLSAE00000026340-735268Lepeophtheirus salmonisexon
EMLSAE00000026341EMLSAE00000026341-735269Lepeophtheirus salmonisexon
EMLSAE00000026342EMLSAE00000026342-735270Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto776932auto776932Lepeophtheirus salmonispolypeptide
EMLSAP00000006041EMLSAP00000006041Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000006041

>EMLSAP00000006041 ID=EMLSAP00000006041|Name=EMLSAP00000006041|organism=Lepeophtheirus salmonis|type=polypeptide|length=308bp
MFSLIGKKESAHEDAIWSCAWGSQSDSNEETGEEVFVTGGVDDTVKIWDI
GGSGGPELKHRLGDHSLGVVSVALNKTSSLLASSSLDSCVHIWDVEKATK
LRSIESSPLDAWTVAFSPDSETLISGANAGKVNIYCVETGQNKQQLLDTR
GKFILSIAYSPDGKYIASGATDGIINIFSMPTGKQXHALEGHALPIRSLA
FSKDSKRLLTGSDDGHMKLYEVSHGSLIGTLSGHTSWVLSVQFSPDNEXF
VSGSSDRSVKVWESTTKQCVHTFTDHSDQVWAASYSPNGRKIATVSEDAS
ILMYSVPA
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mRNA from alignment at LSalAtl2s327:367648..370815+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000006041-701888 ID=EMLSAT00000006041-701888|Name=EMLSAT00000006041|organism=Lepeophtheirus salmonis|type=mRNA|length=3168bp|location=Sequence derived from alignment at LSalAtl2s327:367648..370815+ (Lepeophtheirus salmonis)
CTCGTCAATCACAAAAAAAGAGGGCATATTTTCTTTTGCTGTTCCCTCTG
GTGGCCAGTGTTTCTTTTGGGAATGCTTTTGTTGTTAGATAATAGGTTGC
GTCATACGCGGACTCTGAATCTTTATAATAATAAAGAAATTCCTTTTGTG
AAGCGTGAATTCTAGGTTGATCACCGGCGATACACTGAAATCGGTAGTCC
TTCCCAATGGTAAGACTACTTCTCATTCCCATCTCTTCCTTTCCTTCCAC
GACTAATTCCTTTCCTTCTCCACTAGTTTTCTTTGATTGGTAAGAAGGAG
TCTGCTCATGAAGACGCAATCTGGTCTTGTGCCTGGGGTTCACAATCCGA
TTCCAATGAAGAGACGGGTGAAGAAGTGTTCGTGACGGGTGGMGTGGATG
ATACAGTCAAGATTTGGGATATTGGTGGMAGTGGAGGACCCGAGCTGAAG
CATAGACTAGGAGATCATTCTTTGGGGGTTGTCTCCGTGGCACTCAATAA
AACGTCTTCCCGTAATGAGACTCTTGCACACTTCTCATTCACTTGCCTTA
TAACTTTACTTTTCAGTTCTTGCATCGAGTTCCTTAGACTCCTGTGTTCA
CATCTGGGACGTGGAGAAAGCCACTAAATTGAGGTCCATTGAAAGTTCTC
CCCTCGATGCTTGGACTGTTGCCTTCTCTCCAGACTCTGAAACCCTCATA
TCCGGAGCAAATGCTGGAAAAGTAAATATTTACTGTGTGGAAACAGGGCA
GAATAAGCAGCAACTCCTTGATACACGTGGAAAGTTTATTTTGTCTATTG
CCTATGTGAGTAGAGTTAACCCGCAAATTTATCATGCCTCTCATTTATTC
GAGGTTAATTACAGTCTCCGGATGGAAAATATATCGCTAGTGGTGCGACA
GACGGAATCATTAACATATTCAGTATGCCTACAGGTAAACAAAMCCACGC
GTTGGAAGGACATGCTTTGCCGATTCGTTCTTTGGCTTTCTCCAAAGACT
CAAAGAGACTCTTGACCGGCTCAGACGATGGACACATGAAACTCTACGAA
GTGTAAATCCCAATACCCATTCTTTTATTTATTTTACCNNNTAAGTCCCC
TTTGCTTGCAGGAGTCACGGTTCGCTAATAGGAACTCTCTCAGGGCATAC
GAGCTGGGTGCTAAGTGTTCAATTCTCACCCGATAATGAAMATTTCGTCT
CGGGATCTTCAGATCGAAGTGTCAAGGTTTGGGAGTCAACAACGAAACAA
TGTGTTCACACTTTTACAGATCATTCTGATCAAGTATGGGCGGCTTCTTA
CAGCCCGAACGGGAGAAAGATTGCCACAGTCTCCGAAGATGCTAGTATAC
TTATGTATAGTGTCCCCGCGTAAATAATTATAATACATACACGATTAATT
AATAATAAATAATATAGATTTGTTTATATGATATGTTCACGTAACATGCT
TTCCTCATAATTAATTGAAAGAAACAAAAGACTATCATCCAATATATTCA
TCATTCGAAGACGATCCGAGTATTGATATTGTTACTATCAATCTTTTCTT
GTAATTTAGTTCTTCCCCTCTTTTTCGTCCGAGTTTTGAACTTGCCCGTG
CGCTTATCCTCTCTATCTTTTTGTAGTTTACTCCAGTATGCTATTTCCTC
ATTGCCCGTCAAACTCTCAAGGGAAATTATATTATTTTCCTCGGAGAAAA
GCTCATCTTTAAGTAGAACCAATTGACGCGCTTGTTCCTCATCCGCACAT
CTTATATGAAACTTTGTATTTCCAATTTTAACATCCACATATTGGACGGG
CTTCATGAGTCCATCCCGTATTCGTTTTTTGTAAACCTTGGGATCATGTA
CCATTTCTTCCACAACACATTTCACAATAATATTAGGAACAAATGGAATG
CTACTTGACTTCTCAACGGAATCTTCTTTGCCCTCTTCTTCCTGCTCTTC
ATCTTCCTTTTGGACGGCTCTCTTTGGGTGGACACGCTCTGGTTTATTCA
TTTCTCGAAATTTTTGTTTAGCCAAGGACGCATTTTTTCTTTGAAGATTT
AAATACTTGTTTCGTAGTTTTCGCCAGGAGGTTTTACTCATGACACTAAG
AGTCATCAATTGTAGATCCTCTTCACACTCCATGTTTTCTTTCCTCTTCC
TTTTACGCTTCTTCTTATTCTTTCCTGTGGGTGAGGATGCGTTTGTTGAA
GAGGATGTTTTCTCTCCCTCTCCTTGAGAAGAAGAGTTGTCTATCTCTTC
TTTTAGAAGAGTTGCTCTTTGCTCAGCCTGAAAAGACTTGATACTTTGAA
GCTCCTCTGGATTCTTGGACTCAAAGTCTTCGGATATGAATCCATATGCT
TCAAGAGCCTTTTGTGCAGACTCTACTGTTTGAAACTCAACAAAGGCAAA
TCCTTTTGGGAGATGACTTTCCGTATATTTCGGAAGTGAGACGTACTCCA
CGGGTCCGTACTCTTGAAATATCTGTTGAAGAGATTCTTGAGTGGAGTGG
GAAGGAATGTTTTCTACATAGATTGTCCTTGCCTCTTCATCTGGTTTAGG
CCCCTTAAAGCTAGACTTACGACGTATCTTATCACCGTCAGGTGCAATTT
CAAGGGTTGAAGATTGTATCTTTGTAAGAGCAGTGCGTAGATGATTAAGT
TGGGCCTGGGGCTCATCCGTATGAAAGAACTCAGAGATGAGAGTCTTGAT
TTTATTGAAGGAGAGAAACAGCTCTAGGGAGAGCCAAGGTCCTTCTTTCT
CAATCACACCAATCATAAACTTGGACTTGGCTAAATTTGCATCCGAGAAA
TAAAATTCCATTTGGGAGGTGAGGGTCTTGTAGATCTTTTTACGCCGAGC
TCGAACGCGTCCATGACTCTTATTGTGCTCTGTTCCTTCATTCTCCTCTT
TGTCGGATACATCTGACTTACTTGGGGGCTCTTTTTCCTCCTCATCGGTC
TTCATGGCCAAGAAATTTAGAGACTGGAAGACAATATGTATATTACGTAC
TCGGGGATTATGCGGTTAAGACCGTAGCATTTATTAAAGTCTGGATTGTG
TAATAATAATAAACAAAATTGCGCGGGCGTTACAAGAAAACGAAAATGCT
GCAGGATAACTTGGAAACACTCAATTAAATGAATATCACTCTTTTTTGTG
CTTGACAGCAGTGCAAAT
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