EMLSAT00000006254, EMLSAT00000006254-702101 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000006254
Unique Name	EMLSAT00000006254-702101
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s340	supercontig	LSalAtl2s340:616871..624883 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000006254 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000006254	EMLSAG00000006254-689020	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000027288	EMLSAE00000027288-736216	Lepeophtheirus salmonis	exon
EMLSAE00000027289	EMLSAE00000027289-736217	Lepeophtheirus salmonis	exon
EMLSAE00000027290	EMLSAE00000027290-736218	Lepeophtheirus salmonis	exon
EMLSAE00000027291	EMLSAE00000027291-736219	Lepeophtheirus salmonis	exon
EMLSAE00000027292	EMLSAE00000027292-736220	Lepeophtheirus salmonis	exon
EMLSAE00000027293	EMLSAE00000027293-736221	Lepeophtheirus salmonis	exon
EMLSAE00000027294	EMLSAE00000027294-736222	Lepeophtheirus salmonis	exon
EMLSAE00000027295	EMLSAE00000027295-736223	Lepeophtheirus salmonis	exon
EMLSAE00000027296	EMLSAE00000027296-736224	Lepeophtheirus salmonis	exon
EMLSAE00000027297	EMLSAE00000027297-736225	Lepeophtheirus salmonis	exon
EMLSAE00000027298	EMLSAE00000027298-736226	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto778943	auto778943	Lepeophtheirus salmonis	polypeptide
EMLSAP00000006254	EMLSAP00000006254	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s340:616871..624883+

protein sequence of EMLSAP00000006254

>EMLSAP00000006254 ID=EMLSAP00000006254|Name=EMLSAP00000006254|organism=Lepeophtheirus salmonis|type=polypeptide|length=842bp
MHIYRLFHDEWGTLRIKNLNVSEELDKHVENVVYGQFDILSALEESLFHD
HILTSSHGKEFKTHKLIIDNVLPSSFDSTQFSEDVLGIFLHYCYGKCIPG
NTSETLLIKCNVEFEAYSILQKDPSAINVINDFKNHCLNTINKTNLQKKI
VILVHNIHTYLNVIITEFGGKPVSLNKESRATKSRSHRKSSESSLKKENL
IGNDTKLSYSIKIALQNIALGILKFVHLTHTLSKAFFDDQISLQDQHDII
RAVQSSCLPIFVNQIHRFISTLLRHAESLSLENRQSLSERLIPRVETLFE
SVSKIGLVINEILEVLIKHEVSETKKLCKLSSSNVRSFSLNTNNNNEEEN
SIPPPSPILKSMTTLLHVEDCNKLRKVYYHINNFISFLVHEIETFSEMDI
SSKIRNLSRVMEQYVDELPLLLLRFEEFSHKLQERFDFANFKFCFHAVST
LIESIISKCKKNKVKLKPLFQNICMLIPLDEFRSTLEDLGLMDPVSKSPL
FNSSQQNYDDIKKSSFAENLNLLEDLITPPKADRNTLASIIGKLWPTNEG
DIEFVIKPSIFSHEDESSPEKRSVVIKVHGLIIASRCDWFRRALTSGMKE
AIEKKIIISDVSPCVFRLFLKYIYSGSLSVEGLPIDQISELLLLSDRYEM
DSLKNICESILAQKTSNENVLELLSISDTYNASKLKAKCIEYVHSNPEVI
EANIFSQLSTSLKSELYTLLYWGTRLENIEEKCSLLMKNKFHKRSRRRRA
FVKISSEEDQYFSSFHFRSVECGDGSDKEREDDNDSLMSSHLIHDSNQLE
MCIGQLQDVLGPLVPQEELVRVALMADYDVNRALNYFFSTTT

mRNA from alignment at LSalAtl2s340:616871..624883+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000006254-702101 ID=EMLSAT00000006254-702101|Name=EMLSAT00000006254|organism=Lepeophtheirus salmonis|type=mRNA|length=8013bp|location=Sequence derived from alignment at LSalAtl2s340:616871..624883+ (Lepeophtheirus salmonis)
CTTTTTCATGCTAATTTTTTTGCTTCACAGAATGTAGTTTTAAAAGCTAC
TCAAAGAAAAAAATAACAATAGCCTTCCTTCCTAACTATAAGCACAGTGT
TATTTCAACAAATACTAATACTCTTTGATGGAGATACAATCATGGATCCT
TACACCTCATAATCACCCTCCTCACAAGTTACTTCTACTGAAAAATCATG
GTGTCCTTCTCAAATCAATGTGTAGGAAAATGGAAGGTAAAATGAATATT
TTATTCAAAATTTATTTATTTATTTGTTTGGTTTCGACTAGTGACTAAAA
AATAAAGCCACCTAATAATAAATGATAAAATATAATAAAACAATATGATA
AAATCTACTTAAATAATATGGTAAAATGAAATGAGAAACTATGAATAAAA
TAAGATGAATAATAAGGGGGAACTGTGATTTAGAATAGATTCATAGAATT
ATTTGATAGAATTTAATGATAAATGTAAAAAATGAAAAATAAAACAAAAT
TACACTTGAGATTCCTAGTGTGGAATTAAAGTAGATGTGGATTATTATTT
AAAAGTCTCTTAAACCCGTAAAGTGAAGACGTTTTTCTCACCTTTTCGGG
GAGACAGTTCGGTTAAAAAAGCTGTGTTAGAGGTAATTAGTTTTTTCTAC
ATACTTTGGGTTGGATGTTACAATAAGACAGTCCATTACTAATTTTAAAC
ATCATAACCACATCCTAAAGTTTCTTCCTCTTTTTAAGCGACAACAGCTT
GACTAGATGTAAACCAACCTCATAGAAAAACATCCCTGCATACCATCTTC
ATAAAGCGTTTCTGTGCATTTTCAAGAGCTTTGATTTCCTTTCTATTCAT
TTGATTGCACAACTGAGAAGCGTAGTTTAAAATAGACATAAAATATGCTT
TATAAAGCTTCTTCATCAGCTTCATATTTCTCGTTTTCACAGTTATTATA
TTTAAAAAAATTGTAAGACGAAGGAAAAGTCAACATAGACTTTCTTTTCC
AAAAAAAAAAAATCATTAAATTTGACATTTTTTCTTTACAAAGTCTAAAT
AAAATATGTTTTTTCAAAGAAAAAAAGTCATAGAAATTAAATTTATCCTT
AAATATTATGATCTCCTACGTTTATATTTATAAGTACAAGTTAGACTTAT
TATTCAAATCTTGAGACTAAACTCAAATTTTAATAGCAACACCTCTACTT
GTACTTGGAATATAGTGACATTGTTCATTTCAACTCTGCTACTTAGAAGG
ATTCTTATGATTTATTATAAGTCCTAAGAAATAGAGGAAACCAAATCCTA
CATATATATTTCCACCAAATATAATACATACTTGGTTATAGTCAAAATTA
CATTTAATTTGTGCATTTCTTTGGAAGAATTTTATAAGACTTTATTATTA
CTAAGATAAATTTTTTATTAAATATCTATAGGACACTAAGTTATGTACTT
ACTATAATTTTTTTTTTAAATAGTTATTAAATACTTACTCTTACAATTTA
AACCTGATTAAAGAGATGGCTTATAATTAATTTTAATAGATTTCATATTT
GTAATGTACATTTATTTATAGATTTAAACACATTTAAAATTTGTAAAAGT
CTTTAAAAAAATAAACTGTTAATGGTGTTAACTTACTCTTATTTCTCCCA
TATCTTGTTTTATTACATTATTTTAATTCCTCAAGGAAAGAGAGGATTTG
TTTTAGCCCGACAAAATAATAATAACAAATTGTTGTCTTGTCATCATCAT
AGCAAACGAAATTAACTTTGTATTTGAATGGACATAACGTTTTTCGAGTA
TTAGATAATGTATCTTTACACTAAACTGTTTATGTGAATCACCTAATTGG
GAGTTTTTACATAAAATACGAAGGTTTCTTTCCCTGGATTTGGGAGGGTT
TTACACCTACAAAAATGCTCGAGAAAAAAGACACTTTCTAGGAAAATATT
GCATTTGATTATTCAATAAATACTTAAACAACAGTTGTTAACATATCATT
GGATTATTTCATGATATAAGAATTTATTTAAGAAATGCATTATTAAGATT
TTAACGATTTGTGTTGTAGTGCAATTGATGTCATAAATTGCATCATAATT
CAAGGTGACTCCATCTTGGGGGCTCAAAGTCAATATTTTTACTCCATAAA
ATAAATGATTTTCAAATATACCTAGATAAAACTTCCTCAAACGGGTTTCA
AAGTAAAAAAAGAATATAGCCAGGAAGAAGAGTGAAATTTTAATTCATTC
AAAGTAATAAGTACTGACTATCTCTATAAAATGCCTTAATGTGTAAAAAA
ATATATATACATCTATTAGGAATGCAAAGAGTAGGATAATTTGATGAAAA
TATCCTCACATTTGTATTTAATAGTTAGTTTTGTCTACACTATACGAATA
AGATTGTATAACGATGTAACATATTTTAATATATTATAGGATCAGATATA
TCATAAAACTAGGTAAATTTTTGATAGAGAGTAAGGTCCAAGTCTTTTTA
ATTGTGGGTCCCATTTTTACATCCAATAGTACACTCTTCTCCTTAATATT
AATGAGGAAGGGTCTTCATTGTTATGAAATTTGATTTTTTAGACCCCCAA
AATAGCCGACCTCAGCAATGTAAAAAACCTCTGTACTTAAGATATCTATG
ATAAGTTCATACATTGTGTATTAATAACGTAAAGTCGGTCTGAATGTACT
CTCTGGGTATTTACATTATTATCAACTCTTACTTCCTTCAATCTAAAAGG
ATGTTCCATTAAGTAAATTAGGGCATTTCATTAAGTGAGCATGAGATACA
ATTTATTCTGAGTTGAGTGAAACATCTGCTGTTTTGCAAAATAAAAAAAC
TTGCTATTTTTGTGGAAAAAGTATTTCAAAAATGTCATTGATTAGACTTA
AGAGCTATCTAGAGAGTAACAAATCATGTATATCTGTAGTTATCTCTTAC
AGTCATTTTTGATCTTATAAAAACAAMSGAGTCATATCAATGAACTCTTG
CTGGTGTTTCGCATATAGCATCGAGTGCGCGCTTCACATTAAAGAGAAAA
AAATTACATGGTATAAAATAATTAATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTCAAAGATGTTATAATTATTTTATTATTTCATTAAGTCGGGATTTTG
AACTCACTCATGATCGTGACGTTATTTGGCCAAATGTTGCACATAAATTT
CAAAGAGAAGAGCCTCCATTGTTCTACTGTAAGACATATGAAGTCTCTCG
TGGAAGTCGAAAACAAGGAACAAAAACTTATCTCCGATTTGGTTCCTATC
GTGGTTCAGTCATTGAATTTAAGGTAAATAAGTATATTATCAGACTCGGA
CTTAAGTCAATGGAACTTATGCTTTTGAAGTGGGACCTCACTTTTCGAAA
AAAATTATTATGAAAAAAAATATAAAAGGTGTCATATTTTATTTTAAAAT
TCAAATTAAATTTTAAAAAATTTGAGAAAGAAAAGAGTCGTGCATTTTTA
TCATTAGCCTAGGCAACGATCATTCTAAAAAATAATTTTGGCCCAGAGTT
ATCATCCTTATACGTAGATTGAGATTTTGTCCCTTTGAAAACTTTTTCGC
ATAGAGCCCTGCAATAATTAAGGCCAGTCCTCTATATTACGATGCTAATA
TGTGCTTTTAAATAACAATTTTTTTTAAAACCTAGGTTGACGAAGACGAG
CTTTTTGATCCAAGCAATGAGGAAATGCATATCTATCGTCTTTTTCATGA
TGAATGGGGTACTCTTCGCATTAAAAATCTTAATGTATCAGAAGAATTGG
ACAAACATGTCGAAAATGTTGTGTATGGTCAATTTGATATACTTTCAGCA
CTAGAGGAGTCCTTATTCCATGATCATATTTTGACATCTTCACATGGAAA
AGAATTCAAGACTCACAAGCTCATCATCGATAACGTTCTTCCTTCCTCGT
TTGATTCTACTCAATTCTCAGAAGATGTCTTAGGAATATTTTTGCATTAT
TGCTACGGAAAATGTATTCCAGGAAATACGTCTGAAACATTGCTCATTAA
ATGCAATGTTGAATTTGAAGCATACTCCATCTTGCAAAAAGATCCATCCG
CAATTAATGTCATCAATGATTTCAAAAACCATTGTTTAAACACCATAAAT
AAAACCAACCTTCAAAAAAGTAAGGGATATTTTATTTGAATTATGTTATA
AACTATATGATACATACATACATGCATAGAAATCGTGATTTTGGTTCATA
ACATCCATACGTATTTAAATGTTATAATCACGGAGTTTGGTGGGAAGCCT
GTGAGTTTGAATAAGGAGTCAAGGGCTACAAAATCACGCTCACATAGGAA
GAGTTCAGAATCAAGTTTAAAAAAGGAAAACCTAATTGGTAATGACACAA
AACTGAGTTACTCCATTAAAATTGCACTTCAAAACATTGCTTTAGGTATT
TGAAAAATATCCTTCAAAACATATTGAAGGATTCTATTAATCAACTATTC
ATAATTATTTATCGACACATGTATTATTATAGGGATTTTAAAGTTTGTCC
ACTTGACTCACACACTCTCAAAGGCATTCTTCGATGATCAAATAAGCCTT
CAGGACCAACATGATATTATTCGAGCCGTCCAGTCGTCATGTTTACCAAT
TTTTGTCAATCAGATTCATCGATTCATTTCTACTTTACTTCGTCATGCAG
AGTCTCTCTCACTTGAAAATCGGCAGTCCCTTTCTGAAAGACTCATTCCA
CGAGTTGAAACCTTGTTTGAATCTGTATCAAAGATAGGGCTTGTAATTAA
TGAGATATTAGAAGTTTTAATAAAGCATGAAGTCTCAGAAACTAAGAAAT
TATGCAAACTCAGCTCTTCAAATGTCCGAAGTTTTAGTTTGAATACTAAT
AACAATAATGAAGAAGAAAATTCCATTCCTCCTCCTTCGCCAATCTTAAA
GTCAATGACGACATTGCTTCATGTTGAGGATTGTAACAAGTTGAGGAAAG
TATATTATCACATAAACAACTTTATTTCATTCCTTGTTCATGAGATGTAA
GTAATCCAATACATTTATCATCAAATAATTAATGATTTCTACATTTAAGA
GAGACCTTTTCCGAGATGGATATTTCAAGTAAAATTCGTAATTTGTCAAG
AGTAATGGAACAGTATGTTGACGAACTACCTTTGCTCTTACTTCGTTTTG
AAGAGTTTTCACACAAACTGCAGGAGCGTTTTGATTTTGCTAATTTTAAA
TTTTGTTTCCATGCAGTATCAACTTTGATAGTAAGTCTTAACTTCTTATT
TGTATTATTATAGCATTGATCTCCCCTCTCAAATCCCTCTCACATTATTA
CACTTAGGAAAGTATCATTTCAAAATGCAAAAAAAATAAAGTCAAATTAA
AGCCATTATTCCAAAATATATGTATGTTAATACCATTGGACGAATTTCGA
TCAACTTTGGAAGATTTAGGACTCATGGATCCAGTTTCAAAATCTCCTTT
GTTTAATTCAAGTCAACAAAACTATGATGATATCAAAAAGTCTTCATTTG
CAGAGAATTTGAATTTGTTGGGTACATAATTTATATTGTAATTATTATCT
TTAATATTTATCAAAATTTACTCTTAAATTCATATGTAGAGGATTTGATC
ACTCCTCCAAAAGCTGATAGAAATACTCTCGCCTCCATCATTGGTAAACT
TTGGCCAACAAATGAAGGGGATATTGAGTTTGTAATTAAGCCCTCCATTT
TTAGTCATGAAGATGAGTCGTCTCCTGAAAAGAGATCCGTTGTAATTAAA
GTACATGGCTTAATTATCGCTTCTCGCTGTGATTGGTTTAGACGAGCGTT
AACTTCGGGTATGAAAGAGGCTATTGAAAAGTAGGTTACTCCATGTTTAT
AAATACTTCATGTTATATTAAAATCATTTTATAGAAAAATCATTATATCC
GATGTCTCTCCATGTGTTTTCCGACTTTTTTTAAAGTATATTTACTCTGG
ATCCCTCTCTGTTGAGGGTTTGCCCATTGATCAAATTTCGGAGTTACTTT
TATTGTCAGATCGATACGAAATGGATTCTCTTAAGAATATATGTGAAAGT
ATATTGGCCCAAAAAACTAGTAATGAAAATGTTTTAGAACTCTTGTCGAT
ATCGGATACATATAATGCTTCCAAATTAAAGGTATAATTATACATTAAGA
ATACTTAACTTTAATCTTCACATCTAATGTTAGTTCATTTTCTATCATAT
AGGCCAAATGCATTGAGTATGTACACTCTAATCCAGAAGTCATTGAGGCA
AACATTTTTTCGCAATTGTCCACATCTCTTAAATCGGAGTTATATACTCT
ACTTTACTGGGGAACGAGGTTGGAGAACATAGAGGAAAAATGTAGTTTAT
TAATGAAGAACAAGTTCCATAAGCGATCAAGACGACGGCGTGCATTTGTA
AAAATTTCCTCTGAGGAGGACCAATATTTCTCTTCATTTCATTTCAGATC
AGTCAGAGCCTCTGAGAACAATTCATTAGCTTCTAAAGAAGTATATAAAC
TGTTTAACTTTACATTAATCAAAGAATACTTTATATATCCAACGCAAAAT
CTTGTTTTCCCTTTCGTTTTTTAATCAACTAAAGGCCATTTTTATATTGC
TCTATTAGTAGAATAGTTATGAAATGAAAATGATAATTTCATTAAAACAA
TCGTGGAATGAATGTTTATTATTCTGAGGATATAAATAAATAGATTATGT
AAAAAAAATATTTTAACACGTTAAACCTATGTTTGATAAATGAGTTTTAG
AATGCTTGGTTTGAGCAGTTTGACTATTTTTTTGCTCAAAAATTTCATGG
CTACAATTGCAGATACATAATCAATGGACCATTAAACAGAAAAAAATATT
ATTTTACTAATGACCTTTGAGTGTAACAGACATCATCAAAAAAGGGCTTA
AATATGTGTTGTTTTTTTAGTTTTTGAAAAATTATTAGTTTAAATTTGAG
GAATGAAATTGAAAAAATCATTTATTATATTTTAAACATCAGTAAAAATA
TTCAGTCAGTTGCTTTGAATAAAAATAATTCTCAATTTATGACCAAAAAC
TCAAAACCTGATTTAAAAATCTATAATTTTTTCTTATTTAAAAAAAAAAA
CACACATGTTTTCTTCTTAGAAATAGAGAGGGACTCTAATTTCAAAAAAT
CAATAAATCAGGACCACACATTAACCTAGTGGCTGTTATAGGATTAGTAK
ATTCACCAGACAATTGTTATTATTTAATTATTTTTTTCATTTGAAAACTA
TTTTACTCTAAAATATAAGTCCTAGGTGGGCAAAAACTAGGAAGATAAAA
AAGAGTGCGTATTTCATATATTCAGTATTCCTTCATTTGGGGAGGGCTCA
AACACACTCCCTGTGTACACCCCTGTTAAAATAACCCTTGTCTTACTACA
GGTAGAATGTGGAGACGGGAGTGATAAAGAGAGAGAGGATGATAATGACT
CTCTTATGTCATCTCATCTTATCCATGATTCAAATCAATTGGAAATGTGC
ATAGGACAATTACAGGACGTATTGGGACCACTCGTTCCACAAGAAGAGTT
GGTTCGAGTTGCACTCATGGCCGATTATGACGTGAATAGAGCACTTAATT
ACTTTTTTTCGACAACAACATAGTAAAATTTTATAATTAATATGTATTTA
TCTCTTTTCATCTCAAAAATCAAACAGTTTATTCTATATTTAAAATACAT
ATAACACAGTGCA

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