EMLSAT00000006300, EMLSAT00000006300-702147 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000006300
Unique Name	EMLSAT00000006300-702147
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s343	supercontig	LSalAtl2s343:102495..107380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000006300 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000006300	EMLSAG00000006300-689066	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000027489	EMLSAE00000027489-736417	Lepeophtheirus salmonis	exon
EMLSAE00000027490	EMLSAE00000027490-736418	Lepeophtheirus salmonis	exon
EMLSAE00000027491	EMLSAE00000027491-736419	Lepeophtheirus salmonis	exon
EMLSAE00000027492	EMLSAE00000027492-736420	Lepeophtheirus salmonis	exon
EMLSAE00000027493	EMLSAE00000027493-736421	Lepeophtheirus salmonis	exon
EMLSAE00000027494	EMLSAE00000027494-736422	Lepeophtheirus salmonis	exon
EMLSAE00000027495	EMLSAE00000027495-736423	Lepeophtheirus salmonis	exon
EMLSAE00000027496	EMLSAE00000027496-736424	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto772198	auto772198	Lepeophtheirus salmonis	polypeptide
EMLSAP00000006300	EMLSAP00000006300	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s343:102495..107380+

protein sequence of EMLSAP00000006300

>EMLSAP00000006300 ID=EMLSAP00000006300|Name=EMLSAP00000006300|organism=Lepeophtheirus salmonis|type=polypeptide|length=363bp
MMMNGALMIRKTTTLQCLTRGLSAKAAPXASAVSKKKKPSKKVVNSESFV
QNVFRGMIQPTQVFPYPDALTAEQKENLEMLVPITEKFVTESNDPLLNDK
LETVPENTVQGLRELGAFGLQVPEDLGGVGLCNTQYARLTEIIGSNDLGL
GIFIGAHQSIGFKGILLCGTPEQKEQYLPSLASGENFAAFALTEPSSGSD
ASSIKTKAELSQDGSHYILNGSKIWISNGGIANVFTVFAKTPVXDPGTGV
VTDKISAFIVERKFGGVSHGPPEKKMGIKCSNTAEVYFENTPIPKENLLG
DFGEGFKVAMHILNNGRFGMGAALTGTMRSVITKAVDFASNRSQIFNLKP
PFPRFLHQSQLGL

mRNA from alignment at LSalAtl2s343:102495..107380+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000006300-702147 ID=EMLSAT00000006300-702147|Name=EMLSAT00000006300|organism=Lepeophtheirus salmonis|type=mRNA|length=4886bp|location=Sequence derived from alignment at LSalAtl2s343:102495..107380+ (Lepeophtheirus salmonis)
CAAAATACAATATGTCAAAATTACATAAGATTTTCAATTCAATCCTTCCT
ACATGTGTTTAAAACAGCAAGTACATAAGAGGGAGTTGCTCCATCTTTGC
TGTTTTTTTAAGTAGCATTTTTGAAGCGTACTTATTTTGTGTGGATTTAT
TTTAATTTGTAGTATTTATACTTTAGATGGGTTTTGTCTTTTAGAATCAA
TGCTACATTTTACATAAGGGCTGGATTGTATAAATTATAATTTATACTTT
TTCTATGGGATAGTCGTTAGAAGAGGTCGCTTTGCTACACTTTCTACTAC
ATACGAAATAAAAGTGACGTCAACAAAACCTTTCATAATAACACAGATAA
TTTTTTTTATTGTTCCACAAATTAGTAGAACGTACTTATCTTGCCTGATA
AGTTGACATTATCCTTGCTCGTGTTCATGATGATGAATGGTGCACTTATG
ATTCGTAAAACCACAACCCTCCAGTGCCTAACTCGGGGTCTTTCAGCTAA
GGCAGCRCCASCAGCCAGCGCTGTATCCAAGAAAAAGAAGCCTTCCAAGA
AGGTCGTGAACTCAGAGTCTTTTGTTCAGAATGTTTTCCGAGGCATGATT
CAACCCACTCAGGTCTTTCCTTATCCGGATGCACTCACTGCTGAGCAAAA
GGAAAATTTGGAAATGCTTGTTCCTATTACGGAAAAGTTCGTGACAGAGT
CCAATGATCCCCTTCTCAATGATAAGTTGGAAACAGTTCCTGAGAACACT
GTTCAGGTATGAGAGGATTCATTTGATGCCTCATGAAGCTTTTTAACTGA
TTAACAGTTTATTTTCTGTCTAATTATTATTGAGATTCAGATACTTTGAG
GGTGCATTTATGTTCTTTGTTGTGTTTAAACATCACATACTTAATAAGAT
TTGATGTTTAAAGATAGTCTTAGTAATAGTTGCTACTTCATTGTTGTAGC
TTTCTCTTATGACTTATTCCATATTTACGTACTAGATCCAATAGTGTCAT
AGGCCATAGCTCTGAAATTAAATTCCTTTGATAAAACAACTGTTTACGCC
ACAAATTAATGGAGCGTATACATTGTTAATGTTAGCCATTTTGGTGGCCT
AAACAACCAAGCTTATTAACAATAAAACTCCTTTTTTCATTAATATTAAA
GAAATAAAATGTTGAACTACTGGATATTAAAATGGGACCAACAAATAAAA
GGACTTTACCCTTCATGTCATTAAAAAAATTTCCTCTATTGCCTAGTTAT
ATAATATAAAAATGTATTAAAAACATATTATTTAATCGTTATATCGAGGG
TTCAGGGCCAAATTGTTGTAACACAAAAATTATAATATTAGTGTTATTGA
CTACAAGTCTAATACTTCAAAACAGAGAAATTCAGATTCCTGAAATCAAT
TTCTCAGATTCATTTTATTGTAAAAAACTGGAAAACACTAGTTTTCATAA
TGAAAGAATGGAGTTTCGAAACTCAATTCAGTAAAATATATATTTGAATT
ACGACAATTTTGCTCTTATCACACGATATAATCTTATTTCCATATTGTAT
ATGGAACTTAACGATTACAATGATAGAATAAGATATTTTTCTGTAATTAT
CCTACTTTTCTTGTCCCTAATCAACCAACACTTTTTGTAAAAACAAATTT
ACACCTTTTAATGAGATTTTCAGTGCATCTTACTTTGATTATATTCAAAT
ATCACTGTTTATCTTTGGCATCGAGTAGTATTTAATGTAAGTCTTAAGTC
TTAAAAAAAGCTATTTGATTAAGTTATATAAAGATTTATTGGAATTTTTT
TTTAAATGCTAAAAATATCAACTTTGAGCCCCCAAGATGGCGTCTCCTTC
CATTAGGATGCAACTTATAACGTCAGGGACAAAGCTTTTTAGTTTCATAG
CTCCGTAAGGAAATTCCTTAAATAAAAAAAATGTACACTTCAGAATCTAT
AGCTTAACTATGTAGAAAATAGGGTCATTTAATCTATAAGTGCCAAATTG
AAAAAAAATGTATTCAGGGATTTATTTTCCCTTGTGATGTATAGAACAGA
AATCTAATACATTTACAATCAAATAGACATATGTATAATATAATGTTTTA
ATTTTTGAAATGAATAGGGACTGAGAGAGCTTGGAGCCTTTGGACTACAA
GTACCAGAAGATCTTGGTGGTGTGGGCCTCTGTAACACCCAGTATGCTCG
CTTGACTGAAATCATTGGTAGTAATGATTTGGGATTGGGTATATTCATTG
GTGCTCATCAATCCATTGGTTTCAAGGGGATTTTGTTATGTGGAACACCT
GAGCAGAAAGAACAATATCTTCCTTCATTAGCTTCTGGTGAAAATTTTGC
TGCCTTTGCTCTTACAGAGCCTAGCAGCGGAAGTGATGCGTCTTCCATCA
AAACAAAGGCTGAATTGTCACAGGACGGATCACATTATATCTTGAATGGA
TCTAAAATTTGGATATCCAATGGTGGAATTGCAAATGTTTTTACCGTTTT
TGCGAAAACCCCTGTCKCTGACCCTGGCACAGGCGTGGTTACGGACAAGG
TATCCTCTGAATATATCAAGTTTGTATCCGAACAACAATTATTTATTATT
GTAGATCTCTGCTTTTATCGTTGAACGTAAATTTGGTGGAGTTTCCCATG
GTCCTCCTGAGAAGAAGATGGGAATTAAGTGTTCCAATACAGCTGAAGTT
TATTTCGAAAACACTCCTATCCCTAAGGAAAATTTATTGGGTGATTTTGG
TGAAGGATTCAAGGTTGCTATGCACATTCTCAATAATGGAAGATTCGGAA
TGGGTGCTGCTCTAACTGGAACAATGCGTAGTGTTATTACAAAGGCTGTA
GATTTTGCTTCAAATCGATCACAGTTCGGTGACAAAATCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTATTTATATTATATATTTATCATAAAAGGATTTTCAACTTGA
AGCCGCCATTTCCAAGATTTTTGCATCAGAGTCAGCTTGGTTTGTAACGG
ATGAAGCTATTCAAATTTTGGGTGGKATGGGKTATATGAGAGACAGTGGK
CTGGRAAAAGTTATGCGGGATCTAAGAATTTTCAGAATCTTTGAAGGAAC
GAACGATATCTTGCGCTTGTTTATTGCTCTTACTGGTAGTGTGTTCAAAT
TGTATATATTTTATGAAAATATTTAAATAATATTYGATACTAGGAATTCA
GTATGCGGGTGGTCATTTAAAGGAGTTACAAAAGGCCGTTGCAGCACCTA
TTTCGAATTTCGGTATCGTCATGGATCAAGTTGCCAAAAGGAGCAAGACT
GCTATTGGAATGGGAAGTGGGAACCATCTTGCTGATAATGTTCATCCTAA
TTTGATTGAATCAGCAGATAAAGTGTGTAAGGCTGTGGATATGTTTGGCC
AAAGTATTGAAAAACTCTTGATTAAGCATGGTAAGTGTGTTGGGTTATTC
TTTAGTATAGAAAAAGAGGAGATTCATATATTAATACAAATATTTTTCAT
CAGGCAAAGGAATCATTGGCGAACAAATAGTATTGAACCGACTCGCTGAT
TCAGCCATTGATATTTATAAAATGACTTGTGTTTTATCACGTTGTACGAA
ATCATTGAACAGTGGATTATCTTCTGCTGAACACGAAGAGTTATTGGTCA
AGGTATGGTTTAAATACATCTAAAAAAAAATAATTATATAACGTATTTTA
TCCTTTCAGACAATTTGTGACGAATCGTTCTTCAAGATTAAGACACAGCT
AGCCTCCATTAATAACACCACAGTACTTAAAAATTTTAAAGACATTCAAG
AAATATCTAACAATGTTTGTAAAAACAAGGAACCTGTTCAACCCAATGTC
TTAGGTTTTTAATTTATTTGTATCATCTCATTCTACGTCACCTTTATTTA
TTATTGTTTAATCTTAGAAAGTGAAAGCTAGAACGTATTATTAATTTATT
TTACTTTTATTATTTTAAGCATCATGAATTTGAATTTTAGATGCAGTAAA
ATTAAACATTTTTTTTTTTACAATTCTTAATTGTCCTCCCAAAATTTCAA
CTTTTTTTTCATTGAAGAAGATTGAATCTTCATACAGACACTGGAGTTAC
TTTTACTCTGTTAACCAATGCAAAAATTAATTAACTATTATTGATTATTT
ACAAAAAAATTAAATACGTTTTTTTAAATAAAATGACCACTCTCTTTGAA
ATAAATACATTTTAGTTGTATTTGCCAAATTAGTCTTATTATTTCTTAAT
TTCATTTACTATAAGGAGCAAGGCCGGTGTTAGGTTCCAAATTTTCCAAC
GGATATCCCACTTTTCCCAACTCTCATAATCCGTAGCCGTGAAAAAATAA
CTTTTTTTTATTATTTTAGATAAGTTTTTTTTATATAATACAAATTGAAA
ATATAATTTTCTATAAATAAATTTGACAGACACCATTTTATTTTTTCATT
CTTCAAAAGTGGGAGTTTTTGTCTCATTGATTATGTTAATTCAATAATAG
AATTTTTCATGGATGTTCAATATATTAAGTATGATTTACCACATTATAAT
GTTCAAATCGCCAGAGTTATATTACTCGTAAATACATAGTATATAAGTAG
TAATATTAATAGATCAATATCAACTAATAGCATCAATGAATAATTGATAA
TTTCATCGATTGATGTTGTAAAGAATTAAAGCATAATAGAACGTAGAAAT
TGTAACTTGTAAAAACAGTTAATGCTAGTTATATCTCGAACACGACTTAT
TATATAAAATAAATAATAATATTTTTTAGACTTGAC

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