EMLSAT00000006477, EMLSAT00000006477-702324 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000006477
Unique Name	EMLSAT00000006477-702324
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s354	supercontig	LSalAtl2s354:116431..119316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000006477 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000006477	EMLSAG00000006477-689243	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000028283	EMLSAE00000028283-737211	Lepeophtheirus salmonis	exon
EMLSAE00000028284	EMLSAE00000028284-737212	Lepeophtheirus salmonis	exon
EMLSAE00000028285	EMLSAE00000028285-737213	Lepeophtheirus salmonis	exon
EMLSAE00000028286	EMLSAE00000028286-737214	Lepeophtheirus salmonis	exon
EMLSAE00000028287	EMLSAE00000028287-737215	Lepeophtheirus salmonis	exon
EMLSAE00000028288	EMLSAE00000028288-737216	Lepeophtheirus salmonis	exon
EMLSAE00000028289	EMLSAE00000028289-737217	Lepeophtheirus salmonis	exon
EMLSAE00000028290	EMLSAE00000028290-737218	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto772551	auto772551	Lepeophtheirus salmonis	polypeptide
EMLSAP00000006477	EMLSAP00000006477	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s354:116431..119316+

protein sequence of EMLSAP00000006477

>EMLSAP00000006477 ID=EMLSAP00000006477|Name=EMLSAP00000006477|organism=Lepeophtheirus salmonis|type=polypeptide|length=426bp
MAAKIHEXMXAXLTAGSXGGGSLPAEHHGRAGTGPNGEKPQLINRCDGGS
DEVNDIHLLDSENGLISISSDRSVRVWLLRDTGQYWPSICHYMNSAVTAL
NYHEPQRRLFVGLDSGVISEFVISSDYNSMKHVIDYHAHQGRITAVKYSP
NHKYILSVARDKYFQFHCTESGKRLGGYLCNSWCTAVEYDEQDKYVFIGD
VSGIITVCKLSGGNGVQLINTLKGHGGSIQAVLWDGKKGWLXSCGFDCSV
FVWDIGGRKGTVFELYGHKNKVTCIYYSSTKEMLFSSGEDMNLVQWDMSV
QREITADWNESDSCQLCNRPFFWNLKAMQTQKQLGYRQHHCRKCGKAICS
SCSTRRSQLPRKGHEFVVRVCEECFFSIKDNEKTSLANFYDLKQNVLTMK
IDEAKKXLASVGKGGVIKIWSMKEIL

mRNA from alignment at LSalAtl2s354:116431..119316+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000006477-702324 ID=EMLSAT00000006477-702324|Name=EMLSAT00000006477|organism=Lepeophtheirus salmonis|type=mRNA|length=2886bp|location=Sequence derived from alignment at LSalAtl2s354:116431..119316+ (Lepeophtheirus salmonis)
GTTGAAGAATATAGTAAAAAAATTAAAAAGAGTACTAACTATTAAGTTAG
ACAATAACTCATTAATCCTTCGGAGGGAGTTGTTACGATTATGGCTGCGA
AAATTCATGAAAYCATGGMGGCAAAWCTTACAGCTGGMTCTTTWGGCGGA
GGCAGTCTTCCAGCAGAACATCATGGAAGAGCTGGAACGGGACCTAACGG
AGAGAAACCTCAACTCATAAATCGGTGCGATGGAGGATCTGACGAGGTCA
ACGATATTCATTTGTTAGATTCCGAGAACGGACTTATTTCCATTAGCTCT
GACCGGTAAAGAGACGTCCATAACGAAGCATTTGCTCTTGACGCAACCTT
TAATTTCTCCTTTTAATTTTGTAGGTCTGTTCGCGTTTGGCTTCTTCGTG
ACACAGGGCAATATTGGCCCAGCATTTGTCACTACATGAACTCTGCGGTT
ACAGCTCTCAATTATCATGAACCACAACGAAGACTCTTTGTGGGACTTGA
TTCCGGTGTTATTTCTGTACGTTGAAACTTAGAGGCTCAACCTCCCTCAT
TGAATTATAACTTTTCCGCTAACAAGTAATAATGATATTCTTTTACCCTA
GGAATTTGTAATTTCTTCTGATTATAACTCTATGAAGCATGTCATCGACT
ATCATGCACATCAGGGCCGTATTACTGCAGTTAAATATTCACCCAATCAT
AAATACATCTTGAGTGTTGCCAGAGACAAGTAAACGTTCCACATTTTCAA
GTTCATTCTTTAAAATAATATATATTCTGCTACTGCAGATATTTTCAGTT
TCATTGTACAGAAAGTGGGAAGAGACTGGGAGGTTACTTATGTAATTCTT
GGTGCACGGCTGTTGAATATGATGAACAAGACAAGTATGTATTTATTGGA
GATGTTTCTGGGATCATAACTGTGTGTAAACTAAGCGGCGGCAATGGTGT
ACAGTTGATTAATACTCTTAAAGGCCATGGAGGAAGTATTCAAGCCGTAT
TATGGGATGGAAAGAAAGGATGGCTCTKTTCTTGTAAATAGGGAAACCCT
TGGAAGTTTTTATTTTTTCTAATTTCCATATACTCAATTTAGGTGGCTTT
GATTGTAGTGTATTTGTATGGGATATTGGAGGAAGGAAGGGCACTGTATT
TGAATTGTATGGCCATAAAAACAAAGTTACCTGTATCTATTATTCAAGTA
CCAAAGAAATGCTTTTCTCATCCGGAGAAGATATGAATCTAGTCCAATGG
GATATGTCTGTCCAGCGGGAAATTGTAAAAAACATATTTAGTTGTCTATT
TTGATGGGTTATTAATTAAGTGATTTTAATTTAGACAGCTGATTGGAATG
AAAGTGATAGTTGCCAACTTTGCAATCGGCCATTTTTTTGGAATTTGAAG
GCCATGCAGACACAAAAACAACTTGGATATAGGCAGCACCATTGTCGGTA
TGTATAGGATATTTGCATGACCTTCTAAAGTGAAATTACTATCTAAAAAA
TAATTTCATACGTGGCCCGTCAATTCAATAGTAGGATAGACTATTTTTTT
CATAAATGGAGTTTGTTTTCTTCGACGAATTATTGTCCATTTCTATCAAC
AAATTATTATAATTAATTACTTGGAAATGCCGCAAATTGCACTTACAATA
ACTAAAAATTATCGTTACTGTAAAATAATTATAAACTGGTTGATTTTATT
GGAAAGGCCATATCGGCACCAAATTAAATTTCACAAACCAAATGAAGGCT
TTAAACTTTAGTTAAAATTCTTAGATATCCTCAGAAGTTAGAATAAAAAG
TCGATAATTGATTGAAGTATTAAAAGATTAGTGTATATATTATGTACAAA
AATACATAGGACATTTCTCCTTTTCTTGATTATTATTCTAATTGTTTTTG
TGTTAACCTAAACATAATGTAAAATATGAAGCATACACTTTTGGGTTATA
AAGTATATTAACTAATTTATAAATATATTAATTTATTTTATTTTGTTATT
TAATAAAATGATCTTATTTTTTAGTTTAATTTATCATATAACTTAATTTT
TGTTTAGAAAATGTGGTAAGGCCATTTGTAGTTCTTGTTCAACTCGAAGA
AGTCAATTACCTAGAAAAGGACATGAGTTTGTCGTTAGAGTCTGCGAGGA
GTGCTTCTTTTCCATAAAGGACAACGAGTAATATTTTATTTTAAATAGAT
ATATTTTTTTTAATTAAAATTAATATTTAAGGAAGACATCATTGGCCAAT
TTTTATGACTTGAAACAAAACGTACTCACAATGAAAATCGATGAGGCGAA
AAAAGWCTTGGCATCAGTTGGAAAAGGCGGAGTAATAAAAATATGGTCAA
TGAAGGAAATTTTGTAGAGAATAATTATCTATAAATGTATAGAAAACTCA
TCTTTCAATGTCAAATATGAATGGCTGCCTGGATCGATTTATTATGATTA
TCTTACATTGATGTGTATTTCATCAGAATTTCAGAGTCTACATTCAAAAT
GAAGAATTTTATGTGAGGTTTTTCAGAAGCATTACTCTTTTTTCTTAATC
TTGATTTATAATTTGTGTAGGAACCTTATCAATTAAATGTTTATTTATTT
TTTCCGTTATTAAAATTTATAGATTTGAAATATTTTTCTTTATTATTTAA
AATTTATTGATCTGACGTGTTTTTCTAAAAATTTCTTTAATATATATATA
ATTATTTTAAATTATTTATCGTATTTTATCTTATCCATTTTGCATTTAGC
CATTGTCTTACTTTGTAATCAGCGTTATACCCGGTGTACTAATGTTAAAT
AAATAAAATGATTTTTAAATATCTGTGTCCTTCATGGTATCTTGTATTGT
TATGATTTTATATTTTGTTTTGCATAATAATACTAG

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