EMLSAT00000006546, EMLSAT00000006546-702393 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000006546
Unique NameEMLSAT00000006546-702393
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s358supercontigLSalAtl2s358:80738..83514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000006546 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000006546EMLSAG00000006546-689312Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000028638EMLSAE00000028638-737566Lepeophtheirus salmonisexon
EMLSAE00000028639EMLSAE00000028639-737567Lepeophtheirus salmonisexon
EMLSAE00000028640EMLSAE00000028640-737568Lepeophtheirus salmonisexon
EMLSAE00000028641EMLSAE00000028641-737569Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771611auto771611Lepeophtheirus salmonispolypeptide
EMLSAP00000006546EMLSAP00000006546Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000006546

>EMLSAP00000006546 ID=EMLSAP00000006546|Name=EMLSAP00000006546|organism=Lepeophtheirus salmonis|type=polypeptide|length=795bp
MTFVRAHYQRQTNEAVPSSDDATEGDAVSVRSDSNVQEEFQFIDSNHPSI
VVSTPPSCNCCGVTLCFKKTKMGNKVFVGGVCTLVILVVIYFLTTKCSRS
NKSVCLTPDCIQISASILSSMDQDVDPCEDFYKFACGKWELSNPIPDGKS
SWSPFEKLHEANQLVLKNILFEKNNTQISGAEEKARRYFYSCFDEGGKIE
EVKGEPLRKIINNDMEGWIVMDPSYNISNFDFQRKMYLLQNKYHFGGFFS
WSIVEDESNSSQHVIQLDQGGLSLPTQDFYVKDTEGNKRVIKALEIMMTR
LFRLLLQEEYPNDPITKEGEDNIKQTVLDITNFEKRIANITISTSQRKQE
NNLYNRMTLGQLNVNYNFMNWSIYVNEAFSQINKTIPEDEAVVVNAPKYF
KALTDLINEHKATDNGKMTLNNYMIWQAIRDMKNTLSKSYRDTDLILQKA
MFGKEGHEERWRSCITDTDAVIGYALGAMFVRKVFQGQSKTVAEGMINRI
KEAFIANLNEAAWMDATTKARAVDKAHSITDMIGYPDYILNKNDLNKKYK
GLNVSESDYFRNTLAHSQFVFVESLKKLFKKVNLTQWSMTPPTVNAYYTP
VKNQIVFPSGLLQNPFFALDYPKSLNFGAMGVVMGHELSHAFDDEGRKYD
KNGNMVDWWLNSTTLNFKNKLTCMTQQYSHYTLHNESVDGNITVGENIAD
NGGLKASYRAYTKWLEENTIPEVRLPGIKLNSRQLFFVWCSSSTKETDHF
QLMEDHHSPGKFRVLGPLSNFKEFANVFLCSPYSKMNPKERCEIW
back to top

mRNA from alignment at LSalAtl2s358:80738..83514+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000006546-702393 ID=EMLSAT00000006546-702393|Name=EMLSAT00000006546|organism=Lepeophtheirus salmonis|type=mRNA|length=2777bp|location=Sequence derived from alignment at LSalAtl2s358:80738..83514+ (Lepeophtheirus salmonis)
TGAGTGAAGAGTAAGAGCGTGGGAGAGAAGGATTGAAGGGGAAAGCCACA
CCAACATACAAGAACACAACAGTACTATAATTTATAATCTTCTTCCTCCT
CCTTTTACTTCCAAATGATGACTGATAATAATAAAAATAACAAGTTGTTT
GCTTTCTATTCCAGCTCTGGCTAGAAGTATTCAACATATCAGTAGTAGAG
GAGGCTTCCCCTTTTCAGATCAATATGGGACCATAGAGAGAGAGAGCATT
ATTGGAATCGTATTTCATCACAAATCGGAATGACTTTTGTGCGAGCTCAT
TATCAACGGCAAACCAACGAAGCTGTTCCCTCTTCCGATGATGCTACTGA
GGGAGATGCTGTCTCTGTTCGTTCCGACTCCAACGTTCAAGAAGAATTTC
AATTCATAGACTCTAATCATCCATCCATTGTTGTATCAACTCCTCCATCA
TGTAACTGCTGTGGTGTAACCCTTTGCTTTAAAAAAACCAAAATGGGGAA
CAAGGTCTTTGTGGGAGGGGTGTGTACTCTTGTAATACTTGTAGTCATAT
ATTTCCTAACAACAAAATGCTCCAGATCAAACAAGTCTGTTTGTCTTACA
CCAGATTGTATTCAAATTTCAGCAAGTATTTTATCATCCATGGATCAAGA
TGTGGATCCCTGTGAGGATTTTTATAAGTTTGCATGTGGGAAATGGGAAC
TATCAAACCCAATTCCGGACGGTAAAAGTAGTTGGAGTCCCTTTGAAAAG
CTGCATGAAGCAAATCAACTGGTTTTGAAGAATATTTTATTCGAAAAAAA
CAATACTCAGATCTCTGGAGCGGAGGAAAAAGCCCGGAGGTACTTTTATT
CCTGCTTTGATGAAGGAGGAAAAATCGAAGAAGTGAAAGGAGAGCCGTTG
AGGAAAATAATTAATAACGATATGGAAGGGTGGATCGTCATGGATCCGTC
TTATAATATATCAAATTTTGACTTCCAAAGGAAAATGTACTTGCTTCAAA
ACAAATATCACTTTGGCGGTTTCTTTTCTTGGAGTATTGTCGAAGATGAG
AGTAATTCCTCCCAACACGTTATTCAATTAGATCAAGGAGGACTAAGTTT
ACCAACTCAGGATTTTTACGTCAAGGACACTGAGGGAAATAAAAGAGTAA
TTAAAGCTCTGGAAATTATGATGACTCGACTATTTAGGTTGTTATTGCAA
GAAGAGTATCCCAATGATCCTATAACAAAGGAGGGTGAAGACAATATCAA
ACAAACCGGTGAGTTTTCTTGACATTAAAATTTGTTTTGTTTTGTTGCCA
TTCTCAAATATTTTTTCTAACTTTACCTTCTCTCCCATATGTACTCGTGT
AGTTTTGGATATCACAAACTTTGAGAAAAGGATAGCCAACATCACAATCT
CAACTTCACAGAGAAAACAGGAAAATAATTTATACAATAGGATGACATTG
GGACAACTGAATGTGAATTATAATTTCATGAACTGGTCAATTTATGTGAA
TGAAGCCTTTTCTCAAATCAATAAAACTATTCCCGAAGATGAAGCTGTTG
TCGTCAACGCTCCCAAATATTTTAAGGCTCTCACAGATCTAATCAATGAA
CACAAGGCCACTGATAATGGTAAAATGACTTTAAATAATTATATGATTTG
GCAAGCCATTCGTGACATGAAAAACACTTTGAGTAAATCATATCGTGATA
CAGACCTCATTCTACAAAAGGCCATGTTTGGAAAAGAGGGTCATGAAGAG
CGATGGAGATCCTGCATTACTGATACAGATGCAGTTATTGGATACGCACT
TGGTGCAATGTTTGTCCGCAAAGTATTCCAAGGACAGTCAAAAACTGTAG
CTGAGGGAATGATTAATCGAATCAAAGAGGCCTTCATTGCTAATCTGAAT
GAGGCTGCGTGGATGGATGCAACGACTAAGGCTCGAGCTGTTGATAAGGC
ACATTCCATCACAGATATGATTGGTTACCCCGACTATATATTGAATAAAA
ATGATTTGAACAAGAAATACAAGGGCTTAAACGTATCAGAGTCTGACTAC
TTTAGAAACACTCTCGCACATTCCCAGTTCGTCTTTGTTGAGAGCCTCAA
AAAACTTTTCAAGAAAGTGAACTTGACTCAATGGAGCATGACACCTCCAA
CTGTTAATGCCTACTATACCCCTGTTAAGAACCAAATTGTCTTTCCCTCA
GGCCTACTCCAAAATCCCTTCTTTGCTCTAGATTACCCCAAAAGCTTAAA
CTTTGGAGCCATGGGTGTGGTCATGGGACATGAGTTATCGCATGCCTTCG
ATGATGAGGGTCGCAAGTATGATAAAAATGGAAACATGGTGGACTGGTGG
CTGAACTCCACCACATTAAACTTTAAAAATAAATTGACGTGCATGACACA
ACAGTATTCCCATTACACACTCCATAATGAGTCTGTAGATGGAAACATCA
CTGTTGGCGAGAACATTGCAGACAATGGAGGTCTCAAGGCTTCCTATCGA
GCTTATACCAAATGGCTTGAGGAAAATACGATCCCTGAAGTTCGACTCCC
GGGTATCAAATTGAATAGTCGGCAATTATTCTTTGTTGCCTTTTTCACAG
GTTTGGTGCTCCTCTTCCACAAAGGAAACAGATCATTTCCAACTCATGGA
GGATCATCATTCTCCAGGGAAGTTTCGTGTTCTAGGGCCTCTTTCTAATT
TTAAGGAATTTGCAAATGTATTCCTTTGCTCTCCCTACTCCAAAATGAAT
CCAAAGGAAAGATGTGAAATTTGGTAA
back to top
Add to Basket