EMLSAT00000006583, EMLSAT00000006583-702430 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000006583
Unique Name	EMLSAT00000006583-702430
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s361	supercontig	LSalAtl2s361:311805..317290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000006583 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000006583	EMLSAG00000006583-689349	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000028815	EMLSAE00000028815-737743	Lepeophtheirus salmonis	exon
EMLSAE00000028816	EMLSAE00000028816-737744	Lepeophtheirus salmonis	exon
EMLSAE00000028817	EMLSAE00000028817-737745	Lepeophtheirus salmonis	exon
EMLSAE00000028818	EMLSAE00000028818-737746	Lepeophtheirus salmonis	exon
EMLSAE00000028819	EMLSAE00000028819-737747	Lepeophtheirus salmonis	exon
EMLSAE00000028820	EMLSAE00000028820-737748	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto776218	auto776218	Lepeophtheirus salmonis	polypeptide
EMLSAP00000006583	EMLSAP00000006583	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s361:311805..317290+

protein sequence of EMLSAP00000006583

>EMLSAP00000006583 ID=EMLSAP00000006583|Name=EMLSAP00000006583|organism=Lepeophtheirus salmonis|type=polypeptide|length=421bp
MTRDSDSVLREDIINESFIKDVIKKRYGEKKILCSYKSKVGTEKGDNFMG
DLIACEIKVKDQERNEEQILHWMLKTMKVGKGSKAIQEMNLFSREEAFYT
QFQNDLDKYIKPNLLRIVPLIHSVNEVNREVLVFENLNALDYETPINKKK
GFDDNHVHSVCKWLAELHGAAYVLFQRYPGGYAEWKNNNFFYKYLGDENF
EKFFDTMPRDIENILNNLMNGSDNDALIESFKSSINDFFNEDSDHISIAT
KIKERIYNSRSDFKTLCHGDPWFNNMMFKYDDAKKVKDVILLDMQIIYSG
NIGADLAYFLYSSVTSEDLSNKLDSYLEYYRKCLISFVNEIDPDIRVGLT
FEDVKIDFLKSSLIGILFAMNIFPLIIVEKKDVPNIDFVDMDFSNPEDIE
KFSKEMNIHAKKTDTRRSISI

mRNA from alignment at LSalAtl2s361:311805..317290+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000006583-702430 ID=EMLSAT00000006583-702430|Name=EMLSAT00000006583|organism=Lepeophtheirus salmonis|type=mRNA|length=5486bp|location=Sequence derived from alignment at LSalAtl2s361:311805..317290+ (Lepeophtheirus salmonis)
ATGCCTCACCAGCCGAATATTATGTAATGTTTTAAACTCATTCAAGTCAT
CAATTATCTTTATTGTTTTGTTTTACTCTATCAATTCAATTTTTTTTATC
AGGAGCATTTTAATACTGTTTGTAAAGCTCGTTGTGTGACATATATTTGA
GTAAATTATGACTAGGGACAGTGATTCGGTATTGAGAGAGGATATTATTA
ACGAATCTTTCATCAAAGATGTAATCAAGAAGAGGTATGGAGAGAAAAAG
ATACTTTGTTCATACAAGGTAAGGTCATTTAACCCTTCATTAGGGAACTG
TGATTTTTGGCCTTGAAATTTTATCAAATTGATTCAAATCTGCTAAAAAT
AACTTATTTTGCCGGAACTTTTGTGTATATTTCTGACATCTTTAAAAAAA
CTCTTTTCCTCTTGTAAAAATGNNNNNNNNNNNNNNNNNNNNNNNAAAAA
ATACAATTTTTAATCAAGGTTTGGTGCATTTGTTGACTTTTATTCTTTCT
ATTTCCTTTTTTTTTTTAATTTAAGATATAGGTGTTGGTACTAATGTAAT
ACCAGCTGTTATTCTATATTTCAGACTCAATGTTATCTAAATAATAAGTA
CATTTTTGATACCTAAAGTGTGTTAAAAGTAATTAATATTTCATAGAATT
TTTGATAAAGAAATTAAAATGTTTTATCTACAATAATAACTCTTTTTGAT
CCCGCTAACTAAAGTTATTAAGAATAGTTTTAGAAATATAATTTGTTTCA
TATCTGGGGTAACTTGTTATCGCTGTTAGTTAGCTACATAAAAGTGATGT
TCACTAATGGAGGGTTGATGGAGTCACAATGTTAACACCAGTAAATATGA
TTTTGCTAAAGGGACAAAAAAATTGAATGAAAAGAAAATCGTAAAAAAAA
AACAATTGAACTTTAACCACATTTAAATAATTCACCCAAGCCTTTATTAG
TCAATCTAGAGTTTATATTAATCTTCCTGTAGATCAATCAGTATTTGGGA
CATTCGGGGTAAATTACCCCGAATGTCAAATGGGGTAATTTAGAAAGTTT
TGAGGATAATGGGAGTAATATGTACTTCCTAGTGTTAAATGAAATGACCC
ACATGCTACTAAATGGGGTTGCTTGGGTAGGGCTGAAAGAGCTMTAGCCT
ATCCTCCACATAAGGGAATTTTCGCTTTTTGCTATAATTTTTTTTTCTTT
GGAAATTGGATGTTTGTAATTTTTTCAAAAAAATTTAATAATTAAAATTT
TTAGAGAAAAATTTTAATTCATGAAAATTTAATTTTTGTATTGAAATAAG
ACGTACAACTCTAATATTTGAAATGAAATTAGGTGTAAAAATGTAATTTT
TTGGAAAATCGGTAATCTTTGAATGTTTTTTCGGAAAAAGTTCATATTTA
AATATATATTTTTTTGACGAAATACTTAATTTTCCAAAAATTTTGACAAA
AAATTATTTTTTTTGTCAACGGCTATGGATTTTTGAAATATTTTCAAAAC
AAATCAAGCTCCACCCCAAATATGTATATATATATATGTAATCCTGCTAA
CGCCTCTATCCTAGTTCGAGGCTAATTAGTTTTAATACAATTTCTTTTTG
TTTAACACTAAAAAAAAAGTAGTTCTAATGTTTACCATTGTTGTACTCTA
AAAAAAACACGAATTCCTATGGAAAAGTACGTAACACTTAGTCCGTTATC
AATTAATTATCATTTGACATGATGGATTATTCAGTTAGGAAAATACACAT
AGATTAAATAACAAACATAATGTTTCGCAACAGCAATTACCTTCCCATAG
AGTTGGGGCCCACGTAACGCGATTAAAACAATTTGAACTTTACATACATG
AAGTGTCGAGGAAATTTTTTTGGGAGCTGTTTCTTTTGTAATTAAATATG
TAAAGTTATTTAGTTGTACACATTTCATTTTTTTCAAGAGTAAAATTTAT
ATGAGATGTTTTGTGAGGACATTTATTTAACAAAATTATCTGAAAATAGT
CATCCACACAACTTTTATTCAATATGTGAGCCCCCAACTCTAATAATACC
TCAATACAAGGTCTAAACCCCTTGCAGACCTTGACTATGTAGTCAAKCTC
GAGCTTGGTCCACTCATTCTGGATGGAAGCCTCTAGAGACTTGATGCTCC
TCTGAGGAGTAGCATTAACAAAAATAAAAATCCTTTGAGATGCATATTTT
TTTAATATATCTTTTTTATAAAGTTTACATCGAATATTTTTCTATAATAT
AAACTATGTTATTCTTGATCATTATGTATTATGAATAAGTTATAAGGCTC
GAGTGTAGAATGTCGTTTCTCATAATTAAAAGGACAAATATGGAAATAAT
TTGAGTTCACAACGATATACATACATAATCAATAAAAAACTATATAATAT
TATAAAACACTTTTGTATAAGTTTTATTAATCCTACTTTTAATTTGGAGA
TTGTTATAAGGGTAAAAACTAATAGTCCTGAATAACTATAATCCTACAAA
TGAGTGTTCTCTGGTAATATCTATAATTGAGTTATGATTTTGTGTACGCT
AAGAATCCAACTTTAGACAAACAAAACTTAATAAGGAACTTTTAAATAGT
TTGAATAAAATAGTGATCATTCGTAAATATGTCGTCTCTCAGAGTTACCA
TATTTGTTATGACATTCGTTCGGAATTGGTTTTTATGCTCACACCCATTC
TGACAATTTTCACATCCATAATTAGCGATAATATAAAATTATGAACCTCT
AAATAAGACATATTTTTATTATGGCGGYGATGGAGCCATTAGTTTCCTGT
CCATTCTGACGACTTTTGTGTTTAAGCATTTGTTTAAATTGATATATGAT
GTATATAACTTCACTTTGACCTACTCATTTTCCAATTTCAGAGCAAAGTT
GGAACAGAAAAAGGAGATAACTTTATGGGCGATCTCATTGCCTGTGAGAT
AAAAGTCAAAGATCAAGAGCGTAATGAAGAGCAAATTCTACATTGGATGT
TAAAAACTATGAAGGTAGGTAAGGGAAGCAAAGCAATACAAGAAATGAAT
TTGTTTAGTAGAGAAGAAGCATTTTATACTCAATTCCAAAATGATTTGGA
TAAGTACATCAAGCCCAGTAAGTATTAAAAAGTATCTATTTAGGTGCAGT
TTTAACATGAAGGGCCAGAGGGAAAGATAAATGTGTAGAGCCCTTTTCTT
TTTTATAATTTTTTAAAATTTTATTTTTTTTGAACATAAAGTGTGGGCCC
CTTTCTTTTCTTTTTTTCAAAGGATATCTTTAAGAAACTTTTTTATGGGT
TTTTTACAATTTATTAAAATTGTACATAATTGAACTTTTTTTAAATTCCA
TCCAGCGCAAGGCCCCAATTTGAAAAGGGCCCTACTCAAGTGCCTTCTTT
CTAAAAATGGCCCAGAATATATTCGAAATTGATTTTAATATATTTAATCA
ACACAAATTCATAGATTTGCTACGTATTGTTCCACTGATCCATTCAGTGA
ATGAGGTTAATAGGGAAGTCCTTGTTTTTGAAAACCTCAATGCCTTAGAC
TACGAAACCCCAATCAACAAAAAGAAGGGATTTGACGATAATCATGTTCA
TAGTGTTTGCAAATGGTTGGCAGAGCTCCATGGTGCTGCCTATGTTCTCT
TTCAAAGATACCCTGGAGGATATGCCGAATGGAAGAATAATAACTTTTTT
TATAAATATTTGGGTGACGAAAATTTTGAAAAGTTCTTTGACACCATGCC
TAGGGATATTGAAAATATACTTAATAATCTTATGAATGGATCAGACAATG
ATGCATTGATAGAGTCTTTTAAATCTTCAATCAATGATTTTTTTAATGAG
GATTCAGACCATATCAGTATTGCAACTAAGATAAAGGAAAGGATTTATAA
CTCAAGGTACTTAATTGATAAAAACATGTTCGCTAAATTCCCTGCAGGGT
TGCTGTCGGACATATTCGCTAAATTTATTATTATAGGTTCCAACATTACA
TATATTGTTGTATCTCAGTCTTAAGAGATAATTTTTTTGCATACTATTAA
TAAGTTTTAATGTCTCATTAAAATTACAAAAATATTTCTTCAAACATCGA
ATTTTAGTTAACTTTTCATATGATGACCTATTTTTCCTATTTTTTATGAA
ATTGTATGTCTTTAGATTATGACAACCTATGATTTTCGTTATTGGAATTT
AAAAAAAGGAATGTATTAAACTTACAAAGCAATGACCCATTTTTGACAAT
TTTTTTGTAATTAATAGACATTTTCACCTATTCAGAAAAATATAGTTATA
AGACACTTATGCAGAAATTTCGGCTTATAAAAGGTCACTTTAATATTTTG
TCGAAGTAAAAGCAAATAAGAACGCACCATTTTAATCCAAGAGCAAGAAA
AAGTAAAAAACTTTTTTGGTCTAATATTATCAAAATGGACACATTACCGC
CACCTGCAGGGTCTACTAGATTATTCTGATGATAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGTTAGTATAATAATAATAAAAATTGACGAAT
ATTTCCATTGCCAAAATCACCCTGTGGCAAAAATATATGCAGGGAATTTA
CCCGGGACAAAGAATGTTTTTAATTGTAAATTTACGAATTATTTTTATTT
TATTTTGTTTAGGTCAGATTTCAAAACTTTGTGTCATGGAGATCCTTGGT
TCAATAACATGATGTTCAAGTATGATGACGCTAAAAAAGTAAAGGATGTT
ATTCTTCTAGACATGCAGATTATATATTCAGGAAACATAGGTAATGCCAG
AATATGGACTAATTTATAATATTGGGATAATTTTTGTTTTAGGAGCTGAC
CTTGCATATTTTCTGTATAGTTCTGTCACTTCTGAAGACCTGAGCAATAA
ATTAGACAGCTATCTTGAATACTACAGAAAATGTCTCATCTCTTTTGTGA
ATGAAATAGATCCGGATATTCGAGTAGGTTTAACGTTTGAAGATGTTAAG
ATTGATTTTTTGAAATCGTCACTCATCGGTATTTTATTTGCCATGAATAT
TTTCCCTCTCATTATTGTGGAAAAAAAAGATGTTCCGAACATTGATTTCG
TTGATATGGATTTTTCTAACCCTGAGGATATAGAAAAATTTTCAAAGGAA
ATGAATATACATGCAAAAAAAACTGATACAAGGAGATCCATATCTATATA
GTCGTATAATAGGTATTATTCGTTTTTTTATCGAGTCCAATGCATTCGAC
TACATGAAAAAAATCTACAAATCACGTTTAATATATTTGTTTCAATACTT
TGATATTAAATTTATATGTTTTTTTTTTTTTTGTAAATATTTATAGGTCA
AATACATATATTATAATGTAAACACTTAATTAAATACATTTAGCTATATG
TTGTTGTTTTTTCTATAGGTAAACATCATACGACAC

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