EMLSAT00000006717, EMLSAT00000006717-702564 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000006717
Unique Name	EMLSAT00000006717-702564
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s3734	supercontig	LSalAtl2s3734:1385..7281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000006717 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000006717	EMLSAG00000006717-689483	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000029465	EMLSAE00000029465-738393	Lepeophtheirus salmonis	exon
EMLSAE00000029466	EMLSAE00000029466-738394	Lepeophtheirus salmonis	exon
EMLSAE00000029467	EMLSAE00000029467-738395	Lepeophtheirus salmonis	exon
EMLSAE00000029468	EMLSAE00000029468-738396	Lepeophtheirus salmonis	exon
EMLSAE00000029469	EMLSAE00000029469-738397	Lepeophtheirus salmonis	exon
EMLSAE00000029470	EMLSAE00000029470-738398	Lepeophtheirus salmonis	exon
EMLSAE00000029471	EMLSAE00000029471-738399	Lepeophtheirus salmonis	exon
EMLSAE00000029472	EMLSAE00000029472-738400	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto768143	auto768143	Lepeophtheirus salmonis	polypeptide
EMLSAP00000006717	EMLSAP00000006717	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s3734:1385..7281+

protein sequence of EMLSAP00000006717

>EMLSAP00000006717 ID=EMLSAP00000006717|Name=EMLSAP00000006717|organism=Lepeophtheirus salmonis|type=polypeptide|length=1122bp
MECPGSKGSEVVVKEEESSTRDTPCASTPLDSMEPPAPLPLAPQPEVKVE
PVNGMVHPPVLAPASRPGRTTNQTQFLKNVLMKGMWKHTHSWPFQSPVDT
IKLGLPDYFKIILKPMDLGTIRKRLENNYYWSGQECIDDINLMFTNCYLY
NKSGEDVTVMANSLEKFFLTKIKSMPEIESIIEIPDKKNSIQKHKHLLPS
SCQMVGQTKKMTSFVLPPEKVCNKSKATTPKVLNKSDLKCDTISKNMGAY
KRKADEFSNLRDVAMNKKEPSGIKRPHSKDPFVDEEYLPKNKFKLSEALK
FCNEILRELFSKKHSTYAWPFYKPVDAKQLGLHDYHDIIKEPMDLGTAKA
KMDSREYRTTGEFAHDIRVIFENCFKYNPDTHDIVSMARKLSEVFEERFK
DCPPDDEFPFFSKNNLPKKDFSHQSDSDSEAEKDDWNRRLMEVQEQMRQL
HDQIRLLVEESVQRKKRKSFKARKPNGDGIILVSPDDGELLNKTNMNRGR
SRTCPNSSLTTSQKSTSGLKRSRKSLSTEFSTSSSGRCLGRSGIKKAALG
NIQPSPSMNNQHTLPNTRTNLDYQSDEDDTAKPMSYDEKRHLSLDINKLP
GDKIGRVVHIIQSREPSLRETNPDEIEIDFETLKPSTLRELEKYVASCLR
KSFSKLKKQNISDDTSLSSXASNNNNTFLSILSPTPNNSLKKKVDSSIDK
KVELEKRLADVTQSLSGGNGIDSLTSKKNSKKKDNSTSTKHVENSSSSSA
SDSTDSSSSSSESESESENENSKNSTKKTESASICTDIDSIPIVSGSQHT
PHIALSTTHNVISTTGTVVTHPPSSHQNIQVRKDLMPLDKPNESPKSAPL
STPYCGNNPTPPVDHIINPVLDGSPMDPLSGTESIDSKDIDSIPKTKAML
KGWTSLGSNILHNSTSIGSNTGNTNAIGPGSVSGCSNNSGINSSSNPVKS
NMLQQKASDTFAAFRKAAQDKQERERQLKEQRLKKELAERGNNGNNSGCS
KTLSNTTTLNNNNSSLSSNAIHLSSKSESSEPSITSGNTSTGGINESSDV
VSSHCASAIPTHHSVNSSHMPSSGSSSMDSTRLDRERLRLREQERRRREA
KAHQIDMNLQSDLMQAFEENII

mRNA from alignment at LSalAtl2s3734:1385..7281+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000006717-702564 ID=EMLSAT00000006717-702564|Name=EMLSAT00000006717|organism=Lepeophtheirus salmonis|type=mRNA|length=5897bp|location=Sequence derived from alignment at LSalAtl2s3734:1385..7281+ (Lepeophtheirus salmonis)
GATCTGTATATTGAGAATAATTCAAGTACAAGTATTTTTTGGGACTGAAC
AACTGCCTTCCTCGAGACTTGAGGGAGTTAGGAAGGAGGCCTACTGAGTT
GTTTTGAGAGAATGAGGGGAAGACGGTGAGGKCTGTGAGGTCTGTGAAAT
CTGAAGCTATCCTTTGAATCCTGAGGATGGAATGCCCTGGATCCAAGGGT
TCTGAGGTAGTTGTGAAAGAAGAAGAGTCATCTACTCGAGACACTCCTTG
TGCTTCCACCCCATTGGATTCCATGGAGCCTCCGGCTCCTCTGCCGCTGG
CCCCCCAGCCAGAAGTGAAAGTGGAACCTGTGAACGGAATGGTTCATCCT
CCTGTCCTTGCACCTGCTTCCCGCCCTGGGCGTACCACGAATCAAACCCA
GTTTTTGAAGAATGTACTCATGAAAGGTGTCTCTTGATCTCTTTGCCCCT
TTCCAACTACGACTCAATATTGTCCATTTCTTTCCATGCTACAAGTCATT
TTCATTTAGTCGTGTCAATATTTGATATATCATAAGTAGCATCAAGCATT
TTTTTATATCCCTTTTCTTATCCTAAATATTTTTATGATATACAACTTTA
TGACGCTTGATTCGTCGTAAATCGCGGCATAGTGTCTTTAAACTTAACTT
TAATTTATCACAATTTAGGAATGTGGAAGCACACACATAGCTGGCCTTTT
CAATCTCCTGTTGATACAATTAAGCTTGGTCTCCCCGACTATTTCAAAAT
AATTCTAAAGCCAATGGATTTGGGTACGATAAGAAAGCGCTTGGAGAATA
ATTATTATTGGTCTGGACAGGAGTGTATTGATGACATTAACCTTATGTTC
ACTAACTGTTATCTTTATAACAAATCTGGAGAAGTAAATCACTAGAATTA
TATTTCATTTCGGTATCAACAACTTATTTTTAAGGATGTAACTGTGATGG
CCAATTCGTTGGAGAAGTTTTTTTTAACCAAGATCAAGTCCATGCCTGAA
ATTGAATCCATTATTGAGATTCCTGATAAAAAAAATTCTATCCAAAAACA
TAAACACCTGTTACCTTCCTCCTGTCAAATGGTCGGACAAACGAAAAAGA
TGACATCTTTTGTTCTACCGCCTGAAAAGGTTTGTAATAAAAGCAAAGCA
ACAACGCCTAAAGTGTTGAATAAATCAGACCTAAAATGTGATACGATATC
AAAAAATATGGGAGCTTATAAGAGAAAAGCTGATGAATTCTCCAATCTTA
GAGACGTTGCAATGAATAAAAAAGAACCTTCAGGAATCAAAAGACCTCAT
AGTAAGGATCCCTTTGTTGATGAAGAATACTTACCGAAAAATAAGTTTAA
GTTGTCGGAGGCTCTGAAATTTTGTAATGAAATTTTAAGAGAACTGTTTA
GTAAAAAACATTCCACCTATGCATGGCCATTTTACAAACCTGTCGATGCC
AAACAACTAGGCCTACATGACTATCACGACATTATTAAAGAACCTATGGA
TTTGGGAACAGCAAAAGCTAAGATGGATAGTCGGGAATATCGAACTACAG
GAGAATTTGCACATGATATCAGGGTTATATTCGAAAATTGCTTCAAGTGA
GTAAATAGATTAAAGATGTCACTATAAAATGCGGATGCTTGTCGTTAATT
AAAATATATATATAGGTATAATCCGGATACTCATGATATTGTATCAATGG
CCAGAAAATTAAGTGAAGTATGATTTCTTTTTTATTTCTTGGAAGGTTTA
TTTGGCTTTTTCTCATATTTAGGTGTTTGAAGAAAGATTTAAAGATTGCC
CACCTGACGACGAGTTTCCATTTTTTTCAAAAAATAATTTACCTAAGAAA
GATTTTTCCCATCAATCGGACTCAGATTCTGAAGCCGAAAAGGATGACTG
GAACCGTCGCCTCATGGAAGTAAGAATATATATTAATAGCGTTTTATTTC
AATCACTATCATTTTGATGGACTTTCTCTAGGTTCAAGAACAAATGAGGC
AGTTGCATGATCAAATTCGACTCCTAGTTGAGGAGTCTGTGCAAAGGAAA
AAACGTAAATCTTTCAAAGCTCGAAAACCTAATGGAGATGGAATAATCCT
TGTATCACCAGATGATGGTGAACTATTAAATAAGACCAATATGAACCGTG
GACGTTCTCGGACATGTCCCAACTCTTCCCTTACCACGTCTCAGAAATCT
ACTAGTGGTTTGAAGAGGTCACGTAAATCTTTAAGCACTGAATTTTCCAC
GAGTTCATCTGGACGATGTCTTGGTAGAAGTGGGATAAAAAAAGCTGCTT
TGGGAAATATTCAGCCTTCTCCTTCGATGGTATCTTATAATGTTGATTAT
GTTTTCGATTTTTGAGTTTCTTTTATTTATTAGAATAATCAACATACTCT
TCCTAATACTAGAACTAACCTAGACTACCAAAGTGACGAGGATGACACTG
CTAAACCTATGTCTTATGATGAAAAACGTCATCTTAGTTTAGATATTAAT
AAATTACCTGGAGATAAAATTGGAAGGGTAAGGTTGTATATTTAAGTTAT
TTGAAATAATTTGTCTGTTTTTTTTAAGGTTGTTCATATTATTCAAAGTC
GAGAGCCTTCTTTAAGAGAAACCAATCCCGATGAAATAGAAATTGATTTT
GAAACATTAAAGCCATCTACTCTTCGCGAGTTGGAAAAGTATGTTGCAAG
TTGTTTGAGAAAATCTTTCTCAAAACTCAAGAAACAAAATATATCGGACG
ACACCTCACTTTCAAGCMCAGCCAGTAAYAATAATAACACTTTTTTATCA
ATATTATCGCCTACCCCAAATAATTCTTTAAAGAAGAAAGTTGATTCGTC
CATTGACAAGAAAGTAGAGCTGGAAAAAAGATTAGCTGATGTAACTCAAA
GTCTAAGTGGAGGCAATGGAATAGATTCTCTTACTAGCAAAAAAAATTCT
AAAAAGAAAGATAATTCAACATCTACGAAACATGTTGAAAATAGCTCTTC
TTCTTCTGCCAGTGATTCAACAGATTCTTCAAGCTCAAGCTCAGAATCGG
AATCGGAATCTGAGAATGAAAATAGTAAAAATTCTACTAAAAAAACAGAG
TCTGCAAGTATTTGCACTGATATTGACTCTATACCTATAGTGTCTGGTTC
TCAACATACACCACATATAGCCCTTTCAACAACCCATAATGTTATTTCAA
CAACTGGGACTGTAGTTACTCATCCGCCATCGTCGCATCAAAATATACAA
GTGAGGAAGGACTTAATGCCTCTCGATAAACCAAATGAATCCCCTAAAAG
TGCCCCCCTATCCACTCCATACTGTGGTAATAATCCAACACCTCCTGTCG
ACCACATAATTAATCCTGTTCTTGATGGCTCGCCAATGGATCCCTTATCA
GGAACTGAATCTATTGATTCCAAGGACATAGATTCAATACCAAAGACAAA
AGCTATGTTGAAAGGTTGGACGTCTCTTGGTAGCAACATTCTTCACAATA
GCACTAGTATTGGTTCAAATACGGGAAATACCAATGCTATTGGGCCAGGG
TCCGTGAGTGGCTGCAGTAATAACAGTGGAATTAATAGTAGTAGCAATCC
TGTTAAGAGCAATATGCTACAACAGAAAGCTTCTGATACGTTTGCTGCTT
TTAGAAAAGCAGCCCAGGATAAACAGGAACGCGAACGGCAATTGAAAGAA
CAAAGATTAAAGAAAGAATTGGCAGAAAGGGGAAATAATGGAAACAACAG
TGGTTGTAGCAAGACATTGTCTAATACTACAACATTAAATAATAACAATA
GTAGCCTCTCTTCAAATGCTATACATTTGTCTTCTAAATCAGAAAGTAGT
GAGCCATCGATTACCAGCGGCAATACATCCACTGGAGGTATAAACGAGTC
CAGTGATGTTGTATCCTCTCACTGTGCTTCTGCCATTCCAACCCATCACT
CTGTAAATAGTTCGCACATGCCTTCGTCTGGCTCCTCATCGATGGATTCA
ACTCGGTTAGATCGAGAAAGGTTGCGCTTACGTGAACAAGAGAGACGACG
ACGTGAAGCAAAGGCCCATCAAATCGATATGAACTTGCAAAGTGATTTAA
TGCAGGCCTTCGAAGAAAATATTATCTGAAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTATGTATCATATTGTTACATATGACT
ATCACATTGGCAACAATAATTAACATTCGCCTCATTCTCATTTTTTATTA
AATAGCACCATTGTCACTTTTTATAGTTGTATAGTTCGTATTTGCGTAAG
CTGATAATTTTTAGTGACTATAAATATAATTTATAGGTTTAAATAATTAA
TTAATGAGGTAAGTATAAAACCCGCAGAAAATAGAAGTGATATTTATGCA
TCAAATTGAAATTACTTTTTAACTAATACTTGCATCTAATCTTATGCGTA
TACTTGTTTATAACGTAAACCTGTTCTAAATTAGAGTAGCTCAATAAAGG
TGTCTGATTTCTAGGGAGGGACATATAATAAAGCGCGAAAGGGTACAGTG
AGACTTATGGTACCCCTGAAATAATACCTTTGTTAATGTCAGCTACATGT
ATGACTTTGGAGGGAGAAACTGTATTACTACTAAAGAGACCTTAATATTA
TTGAATTAGTACAGGTAAAATACTGGATAATTTTGCAACATTTTTATTAT
TATTTATTCATGCATTTATGAAAAAAATTAAATGAGTAGTAGACTGGAAT
TCATAATTCAGAGAGAGATGTTAACACAGTAAAGAAAGATCCGTGGCACT
AACCTTGTTTCCTTTTCTGTTCTTAAAACTGTTATTCTTCTCAACGTTTT
TGCTATCCCTGCAGTGATTTTTCTAGTTAAAGGCTATTTATACGTTTGAA
ATACTTAAATGATAAGATCTTTTTATTTCAACTTTTGATTTTAAACAAAA
AGGGTTTCTGTCAATCGAATAGTACGATAATTAATCGTGCAGCTATAAAT
CCAATATTTTTTTCCCATATCATTCTTACTATCGTACATAATCCTAGAGA
TTTAAAAAAAATGATATGAAGAAAAAATTGACGTCGTCGTATTTGACAAA
AATATTCCAATTTTAGTATCAATAAATAGGTCTGAATGAATGATTTATGT
ATTAAAAACTTATATTTTTGATTGTATTGGTAAACTAACTTTCGGCTTGA
TAAAGTTTCCCTTGCTTTTACTCAGCGTAAGTGCTGTATTTTATCTCCGT
AGTGATTCATTAATAAATTCACTTTCCGCTAAGTGCGACTTAATGAAAAT
TAAAGAGGGCCAAGATTTTTATAGTTTCTTCTTGAATAATGCGTTTTATT
TTCCAAAGATATATTCTTGAAGAGTGCATGAAAGACGAAAAGTAACACGG
ACGATTTGTCGCAGAGCTTTAAATGTTTGACACCGGTGTATTTCTTCTCT
ATCACTGATAGTTACGGTGTAGGATTTATGTTAATTTCCTTCATCTCATG
ACTACTCGCAGTTTCTTTTTCAGCATACTAAATAAAGTGGTACATAGATA
GTGATTTAAATCCTTTATGCAATGGATATGCTATAAAAAGAGACAGAAAA
TCAATATGGTAACCCTGATAATTTAATTTGAAATAGGTTTTGTACATGGA
CGTCTCAAGCACCGGGACAACAGACTAGAAAACGCGCGCTCCAACGGATG
GCTAGCAAGAAGTTCATAAATATGTTATTCTTTTATTTAAAATATGTTCA
TCCGGTTCTTGAATACATATTCTGAGATAATATTGAGATATATAATGAAT
AAATATTTATTCATAATGTGACAACCTATAAGAATTCAGGACTATATAAC
CTGTAATATATCAGCAATATAATTTATATTAAATTACTTCAAATATA

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