EMLSAT00000006974, EMLSAT00000006974-702821 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000006974
Unique Name	EMLSAT00000006974-702821
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s397	supercontig	LSalAtl2s397:1164961..1169655 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000006974 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000006974	EMLSAG00000006974-689740	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000030633	EMLSAE00000030633-739561	Lepeophtheirus salmonis	exon
EMLSAE00000030634	EMLSAE00000030634-739562	Lepeophtheirus salmonis	exon
EMLSAE00000030635	EMLSAE00000030635-739563	Lepeophtheirus salmonis	exon
EMLSAE00000030636	EMLSAE00000030636-739564	Lepeophtheirus salmonis	exon
EMLSAE00000030637	EMLSAE00000030637-739565	Lepeophtheirus salmonis	exon
EMLSAE00000030638	EMLSAE00000030638-739566	Lepeophtheirus salmonis	exon
EMLSAE00000030639	EMLSAE00000030639-739567	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto780486	auto780486	Lepeophtheirus salmonis	polypeptide
EMLSAP00000006974	EMLSAP00000006974	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s397:1164961..1169655+

protein sequence of EMLSAP00000006974

>EMLSAP00000006974 ID=EMLSAP00000006974|Name=EMLSAP00000006974|organism=Lepeophtheirus salmonis|type=polypeptide|length=750bp
MATLIARNDFVFVSNGLKFIVMDFKRRSNSSLTSEYEKSAYSNYIKSLKK
PYSGQIDSINMHGALQNIMTPFHSIPYDEELGFKLIKNKEAVGKLLRKDD
SFQYARSVLSPGHRLNQYRNQNEFSIGVGVDGNTKTVGFFVKVLGKNKVI
CVPPTEIMVIKDKHKQICSLYENVIRQSPLSAYHQARNPNGFWSDISVRT
NSQEESFVTVKXNGEADKKSVEDLKDSFLNIVSRLSMKHVFSKDTTATII
DNGEDLHETINGIKLRISQETNYFSNTAMMKELYNEIFKGLRFISKDSVL
LDLNCGCGFSSISASSHCNTVIGFDKNVNDALYNAEMNGVQDQTSFFHGD
LKITIPRFFEIASDSMIANKPVYVLIHSRESIGYEVFECFRKCPHIERVV
YVTSVPEKQPLFDFINMIKFRFNSMMKNSVNYTPFKFCYATPIDLNTHTV
HNIGDSVTPEELKIANENPKILCSELSPCGKFIALGDDFKRLLIWETNGW
KLKYQTKVERRINRIAFTPDSQKVVTADKSGDSYLYDILNDKEELILGHL
SMLTCIAFNEDGSLMITSDRDEKIRISHFPNAYNIQGFCLGHEDFVTNFK
LINKDLLISSSGDGSLRLWKYLEGTQVDVAYPFQDAHIEVNDDDQDAAVI
YFSVHEVTDSDSYIIVVLERSPSLVCYKVCDGKLCFTSSIXLPSPPITVT
VNNSNLDGNEGKIEQLRKRIIDNTREYMKRKEERLGKEVEPVVKKTKCNA

mRNA from alignment at LSalAtl2s397:1164961..1169655+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000006974-702821 ID=EMLSAT00000006974-702821|Name=EMLSAT00000006974|organism=Lepeophtheirus salmonis|type=mRNA|length=4695bp|location=Sequence derived from alignment at LSalAtl2s397:1164961..1169655+ (Lepeophtheirus salmonis)
CAACCACGTTCTAAATTGGTCAATGTTGTTTTTGATTATTATTTAATATT
TTTTTTATTATTTACTTATAAATAATACATCTTAACCAATAGGAAATAAC
CATACTTTAATCCTTATTGAGGGTTGTGTATTCATTTTTTCTATACCAAT
AGCGACCGATTCCTCAAGAATGGCGACCCTAATCGCCCGTAATGATTTCG
TATTCGTGTCCAATGGACTTAAATTCATCGTCATGGACTTCAAAAGGTTA
TCATTGCTTATTAGTTATTAATATTATAAATTAAATTTTAGAATTCTGTT
GAAATGAATCTTGTGGCTAAAGCTTTGTTATCAATATGTATTATAATTTT
TTATTCTCTTATAGAAAGACACAAAATTATCGTCGTTGTCTTTCATCCTT
TCGTCCAAAATTGTAATTCTAAATTTGTGACTTAAAATTATCATTTTATT
GAGCGTTTTCACATACGTAATAAATTGCATTATAACTGAAGGAGACGTCA
TTTTGGGGCCTTAAAGTTGACATTTGTACTTAATAAAATTGATTAATTTC
CAATCATTCTTGATGAAACTTCATCAAATGGCTTAAAGAACATATAACCC
CTTAATATCCGCACTGAATACTGCTTATGCCAATGATAAACACTGATATT
TGAATATAATCAAAGGGATATGTGCTGAAAATCCCTATAAAATATCTCAA
TTTGTAATTAATTTTGTTTTAGATCAATTAGGGACGATAAAAGTAGGATA
ATTAGATATAAATATCTTATTCTTTCCATTGTAATAGTTAATTATAACAT
AGAAATAAGATTGTATAACGATCTATTAACATATTTTGAATACATGTTAG
GGTCATTTTATAGAGTAAAGTTTATCTGTTTGTTAGGGAAGAACATATTT
TTCAGTTTTTGTTTAATATCTTAAAACCTTATGATCTAAGAAATAAAAAT
TTAGCAATGAGCGTGTGTAGCTAAAGCTAAATATATCTAAATTATTAAAG
CAAAGGGTATGGACGCCTAATAACTCTGGTATCTGGTATACCGGGTATAC
TGTTAGTATATAATAAAACTGAGCAACATATGTCTGATAAGATAGTAGGA
TCCTTTTATTTCTTGATCCCATTTTGAAGTACAATAGCTCATTATTTTCC
GTAATATTAATTAAAAAGGGATTTTTATTGTTTATAAAACTTAGTTGCTT
AGGCCCTCAAAATGGCCGACATCAACAATGCTGATGTCATATGAAAACGC
ACTATAACAATATATCATGGCGTTATTACTTATTTAATAAGAGAAGTAGG
CGCTCCTTTACGCCTTGAATTTGCTCAATTTTTCTTGTACAAGTTTTAAG
TCACAAATTCTCCCTAATCCCAAGGAGAAGTAACAGTTCTTTAACCTCTG
AGTATGAGAAATCTGCATACTCTAATTACATCAAGTCCCTAAAGAAACCA
TATTCTGGGCAAATAGACTCAATAAACATGCACGGAGCACTTCAAAACAT
TATGACCCCTTTTCACTCTATACCCTACGATGAGGAACTCGGATTTAAAT
TAATTAAAAATAAAGAGGCAGTAGGGAAATTACTCAGAAAGGACGACTCA
TTTCAATACGCTAGGAGTGTTTTATCTCCCGGACATCGTCTTAATCAATA
TAGAAATCAAAATGAGTTTTCTATAGGTGTTGGAGTGGATGGGAACACAA
AAACAGTTGGATTTTTTGTCAAGGTCTTGGGTAAAAATAAAGTTATCTGC
GTTCCTCCAACGGAAATAATGGTTATTAAGGATAAGCATAAGCAAATATG
CTCATTATATGAAAACGTAATTAGACAGAGTCCTTTATCTGCGTATCATC
AAGCTAGAAATCCAAATGGTTTTTGGAGTGACATTTCTGTTAGAACTAAT
TCGCAAGAAGAAAGTTTTGTAACGGTCAAGGRAAACGGTGAAGCGGACAA
GAAATCCGTAGAAGGTAAAGCAGCTCAGTTTGTTATATGGTCAATTATTT
ATCTAATGTTTTTATTACTTTTTAGATCTCAAAGATTCGTTTTTAAATAT
TGTGAGTAGATTGAGCATGAAGCATGTGTTTTCAAAGGATACAACAGCTA
CAATTATTGACAATGGAGAGGATCTACATGAAACGATAAATGGGATCAAG
TTAAGAATTAGTCAAGAAACAAATTACTTTTCAAACACAGCAATGATGAA
AGAATTATATAATGAAATCTTCAAAGGACTTAGATTCATATCCAAGGACT
CAGTTCTTTTAGATTTAAATTGTGGGTGTGGATTTTCTAGTATCAGTGCA
TCCTCGCATTGTAATACAGTCATAGGTTTTGATAAGAATGTAAATGATGC
TTTGTACAATGCCGAGATGAATGGCGTTCAAGATCAAACATCTTTTTTCC
ATGGAGACTTGAAAATCACAATCCCACGATTTTTCGAAATAGCATCTGAT
TCAATGATAGCGAATAAACCAGTTTATGTTTTAATTCATTCTAGAGAATC
CATTGGGTATGAAGTATTTGAGTGTTTCCGTAAATGTCCACATATTGAGC
GAGTAGTTTACGTGACATCCGTTCCTGAAAAACAACCTTTATTTGATTTT
ATCAATATGATAAAATTCAGATTTAATTCTATGATGAAGAACTCTGTGAA
TTATACTCCCTTTAAATTCTGTTATGCCACTCCAATTGATTTGTACCCGT
CCACCAGGCATTGTGAACATATCTTTGTGTTTAGAAGATAATTAATAAAT
GCTATAATTATGATCATGGTTGTTCGTTTATTTAGTATACTCAAGCTATA
TTATATCAATATTTAAAATTTAAATAATCTATTATTAATAGGAATACACA
TACCGTTCATAATATAGGAGACTCCGTGACCCCTGAAGAATTAAAAATTG
CAAATGAAAATCCCAAGATATTATGCAGTGAATTATCTCCTTGTGGAAAA
TTTATAGCTCTTGGTGATGACTTTAAAAGACTCTTGATCTGGGAAACAAA
TGGATGGAAATTAAAGTATCAAACTAAGGTAGAAAGAAGGATAAATAGAA
TTGCCTTTACTCCTGACTCTCAAAAAGTTGTCACTGCAGGTTATGCCTCA
AATAAATATATACTGAACTTAAATTATTTCAAGAAAAAATTTAAACCATT
ATAGATAAAAGTGGGGATTCTTACTTATACGACATTTTGAATGATAAAGA
AGAACTGATACTCGGGCATTTATCCATGCTGACGTGCATCGCTTTCAACG
AAGACGGATCTCTCATGATAACCTCAGATAGAGATGAAAAAATACGCATT
TCTCACTTCCCTAACGCCTACAACATCCAAGGATTCTGTCTCGGACATGA
AGACTTTGTTACAAATTTCAAACTAATCAACAAGGATCTCTTGATATCCT
CATCAGGTGATGGATCCCTACGTTTATGGAAATATTTGGAAGGTACCCAA
GTTGATGTTGCCTATCCATTCCAGGATGCCCATATTGAGGTCAATGATGA
TGATCAAGATGCCGCTGTTATATATTTTAGCGTTCATGAAGTTACGGATT
CTGATTCATACATTATTGTAGTTCTTGAAAGGTTAGTTATTTTCTTTTAA
AAAGTACCTAGAAAAGTTGAAAATTCAACGCCAATGACTCAATAGGTCGC
CCAGTCTTGTTTGTTATAAAGTATGTGATGGTAAACTCTGTTTCACGTCT
TCTATTAAKCTGCCTTCGCCGCCAATCACTGTGACTGTAAATAACTCGAG
TTCTGTTTGGACACTTTGTCAAGATGGCTTACATATATTGGAATTAAACA
AGGGGGCTATGAAGTTTGTTGGGGATTCAGTTTTCCAAGAGCTATTGCAA
ACATCAAAAGACGATCCGTTTTTCAAAGGTATAGCGTCAAATAAAAAGTT
CTATATGAGATGGGTAATTGAGTGCAGTTATTTCTGTATTTCATTAAATA
TAACAAAATAATTTATCCATTCGTAATTAATACATATAAGATAAACTATA
TAAAAATATTATAATAAAATCTTATCTTATTCAGATTTGGATGGTAACGA
GGGAAAAATCGAACAACTTCGKAAGCGTATAATAGATAATACAAGGGAGT
ATATGAAGCGTAAAGAAGAACGATTAGGAAAAGAAGTTGAACCAGTCGTT
AAAAAAACAAAATGTAATGCTTAAAATTAGAATAATAAATATACTTTTAA
TATTTCTACAAAAATTAATTGAAGTAGAATCAAATCAACGAAACGTAATT
AAAATAATAATAACTACTATAGAAATGACAAACGATTGTTGAGCTCCTAA
AATTTGATTAAAAACAGTTATAATTCGCCAATTCTCTGATTTGTAGCCTC
TTCAGCTTTATCGCATACATTGTCATATCTAAAAATATAAGAAATTATAT
TGATAAAAGTTCATCTTTGTTCTCAGAACAACGATCGACTTTTTTCATTC
GACATCAAATCTCCATAAAAAGGTAATTTTTAATCAAACCAACTTAAAAG
TTTGATGAAATTTTGTATACAAGTAGATTATTACCTGCAAACTCTAAATC
TAATGATGATTGGTTCCATAGATTTTGAATCCTTTAATTTTACTATTTTA
CCAAAAACTGCCTTACTCATGAAATTTTTGATTGTCTCATATGCAGTCCC
GTGACTACAAGGAAGGGGTTTAAATTTTCCTTCTCTGAACTAAAA

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