EMLSAT00000008852, EMLSAT00000008852-704699 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000008852
Unique NameEMLSAT00000008852-704699
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s552supercontigLSalAtl2s552:1363..4087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000008852 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000008852EMLSAG00000008852-691618Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000039345EMLSAE00000039345-748273Lepeophtheirus salmonisexon
EMLSAE00000039346EMLSAE00000039346-748274Lepeophtheirus salmonisexon
EMLSAE00000039347EMLSAE00000039347-748275Lepeophtheirus salmonisexon
EMLSAE00000039348EMLSAE00000039348-748276Lepeophtheirus salmonisexon
EMLSAE00000039349EMLSAE00000039349-748277Lepeophtheirus salmonisexon
EMLSAE00000039350EMLSAE00000039350-748278Lepeophtheirus salmonisexon
EMLSAE00000039351EMLSAE00000039351-748279Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto768214auto768214Lepeophtheirus salmonispolypeptide
EMLSAP00000008852EMLSAP00000008852Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000008852

>EMLSAP00000008852 ID=EMLSAP00000008852|Name=EMLSAP00000008852|organism=Lepeophtheirus salmonis|type=polypeptide|length=449bp
MKIRRILEILFLCQLANGQISFGGDTSEDRSSTTKSPSSGFITPAPEENI
CNAYNGLPGNCITLTECDSLFKLLKRPVPPEHIKILRKSVCKFGNRIPDV
CCPIETTVIPPSTESTQTPIGPTMVPGVTMDMNETRNGETTIPMNETVEV
TTKASSTTRVGSTFPGSSSTQVFSPTPSPLNIRVPIPGLDTCGHSIVKVH
ERIVGGKPSELHAWPWIAALGYRVSGSKDSDFLCGGTLISKRHVVTAAHC
VFRRSDLSKVRLGEHDLEDENDGAQPRDYGIIKTIIHPDYHPIRFNNDIA
ILVLSNDVEFDHRITPICLPDLMKDSGTSGFSFGLTKQVRDRLLDAHPFV
AEINLEIISNRECSRAFTNFRNVNVTENKLCALDQNGEKDACQGDSGGPL
MTSQGSIAKSNWFLAGVVSFGYRCGVKGFPGVYTRVSEYVNWIKQETSF
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mRNA from alignment at LSalAtl2s552:1363..4087+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000008852-704699 ID=EMLSAT00000008852-704699|Name=EMLSAT00000008852|organism=Lepeophtheirus salmonis|type=mRNA|length=2725bp|location=Sequence derived from alignment at LSalAtl2s552:1363..4087+ (Lepeophtheirus salmonis)
GTACAGCATATTTTCTAGCCTTTGAAAATCGCCGGTAAGAGTGGGGGGAA
GCGCGCGAAGAATGTCATCAGCTCACAATACTTAAATGCTGCTTTTTGTT
ATTATCAATGATACAATCTACCCATGGATATTTGAATATGTAGGTATGTA
GTTGAGTAGGAAAAAGGAGTCTGAAGACGTTGGAACGGTGTTCAGGTAAA
TGTGTTATTATATTTTGTAAAAGTATGGAAATAATATTAGTACAAAGACA
CACATAGTCCCAAGATTAATATTTCATTTAAAAAAAAAACATAATTCAAG
AGCATTAATCTTTGTTTTAACGAGAAATAAATTAAGTTTATTTATGGCAA
GATATAAATCKATCYTGGTGKSAGGTTGTTTCAGAATCCTRACCAATTAA
TMTGAAGGAGGGTTGACAWCTCTATATATATATATATATAGTAATAGNNN
NNNNNNNNNNNNNACAACTCTATATATATATATATATAGTAATAGATAAT
TCTTTAAGACACCAATTACATGCATATTAACATCTACTTATTACTTCTTA
TTCAATTATACTAGTAGCTACCGCGTTCCTCTTACTCATATTGAGTATCC
AGTCCTCAATGTAAAAAAAAAAAAAATCATACTGCAAGAACACATAACTT
GTTTTGCAAAAATAAAAATAATAAACAGTTCTGCACGTTCATTCAATCAA
GAAAGAGCATGAAGATACGAAGGATCCTTGAAATTTTATTCCTTTGCCAG
TTAGCCAATGGGCAAATTTCATTTGGAGGAGACACGAGTGAAGATAGGAG
TAGTACAACAAAGTCCCCCTCCTCTGGATTTATAACCCCAGCTCCAGAAG
AAAATATTTGCAATGCCTATAATGGACTCCCGGGAAATTGCATAACACTC
ACAGAATGTGATTCCTTGTTTAAGCTATTAAAGAGACCAGTTCCACCGGA
GCACATCAAGATTTTAAGAAAGAGTGTCTGTAAGTTTGGAAATCGTATAC
CGGATGTGTGTTGTCCTATTGAGACGACTGTCATCCCACCTTCCACAGAG
TCAACGCAGACACCCATAGGACCAACAATGGTGCCTGGAGTGACGATGGA
TATGAATGAGACACGTAATGGAGAAACTACTATCCCCATGAATGAAACAG
TTGAAGTGACAACAAAGGCATCATCCACCACAAGGGTAGGGTCCACCTTT
CCCGGCTCTTCCTCCACTCAAGTCTTCTCGCCAACACCTTCACCTTTGAA
TATCAGAGTCCCCATTCCTGGACTAGACACCTGCGGTCACTCCATTGTTA
AGGTTCATGAAAGGATTGTGGGAGGAAAGCCATCGGAATTGCATGCATGG
CCATGGATCGCGGCATTGGGATATCGCGTAAGTTCAATGTGTCATCAAGT
ACAATAAAATTTTCATTTATATCTTCATACAGGTCAGTGGCTCAAAGGAC
AGCGACTTCCTATGTGGAGGAACACTTATTAGTAAGAGGCATGTTGTCAC
GGCTGCACATTGTGTCTTTCGACGAAGTGACTTATCTAAAGTACATATAG
GTAAATAAGTACATCACATATAATTGTTATGCTATAACCGATAGGTAAGA
CTTGGAGAGCATGACTTGGAAGATGAGAATGATGGAGCTCAACCAAGGGA
CTACGGTATCATCAAAACAATTATCCATCCGGATTATCATCCAATTCGTT
TCAATAATGATATAGCAATCCTTGTCTTGTCAAACGATGTAGAATTCGAT
CATCGTATAACACCGATTTGCTTACCGGATTTAATGAAGGATAGCGGGAC
TAGCGGATTTAGTTTCGGGCTAACAAAACAAGTTCGAGATCGACTATTGG
ATGCACATCCATTTGTTGCAGGTTGGGGAGCAACCAAGTTCCGAGGAGCT
TCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAATTATTAGAAATTAATTTGGAGGTAATGAATGA
AGCTCTATCAAAGGGATTAATTAAATATTATATTWTTWTAWAAAATAGAT
CATTAGTAACAGAGAATGTTCAAGAGCCTTTACAAACTTTCGAAATGTGA
ACGTAACAGAGAATAAACTATGTGCATTAGATCAAAACGGTGAAAAAGAT
GCATGTCAAGGTAAGATATACACATTTATTTAAAGCAATAGATACATTCT
CCTTTATAAAGGTGACTCCGGAGGACCTCTAATGACCTCTCAAGGCTCTA
TAGCCAAATCCAATTGGTTTTTAGCAGGAGTTGTTTCATTTGGATATAGG
TGTGGAGTTAAAGGATTTCCCGGAGTGTACACGCGGGTTTCAGAGTATGT
CAATTGGATAAAACAAGAGACATCCTTTTAAAACTTTTTAAATGAGTGAG
AGTTGCTACAACTCATTTTGTATCATTGTTTGTCAGTAAAAAATGCTTTT
AATAAAGGGATTTTGTTTCTTCTCTCAAGTACATAATTGATTGATTAATT
AATTTATATAATTATTACACCTATAAATATATTTATAAAAAAAAATTACT
ATTTATATTTTAAAAATGTTGTCAA
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