EMLSAT00000010488, EMLSAT00000010488-706335 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000010488
Unique NameEMLSAT00000010488-706335
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s696supercontigLSalAtl2s696:71522..75681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000010488 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000010488EMLSAG00000010488-693254Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000046708EMLSAE00000046708-755636Lepeophtheirus salmonisexon
EMLSAE00000046709EMLSAE00000046709-755637Lepeophtheirus salmonisexon
EMLSAE00000046710EMLSAE00000046710-755638Lepeophtheirus salmonisexon
EMLSAE00000046711EMLSAE00000046711-755639Lepeophtheirus salmonisexon
EMLSAE00000046712EMLSAE00000046712-755640Lepeophtheirus salmonisexon
EMLSAE00000046713EMLSAE00000046713-755641Lepeophtheirus salmonisexon
EMLSAE00000046714EMLSAE00000046714-755642Lepeophtheirus salmonisexon
EMLSAE00000046715EMLSAE00000046715-755643Lepeophtheirus salmonisexon
EMLSAE00000046716EMLSAE00000046716-755644Lepeophtheirus salmonisexon
EMLSAE00000046717EMLSAE00000046717-755645Lepeophtheirus salmonisexon
EMLSAE00000046718EMLSAE00000046718-755646Lepeophtheirus salmonisexon
EMLSAE00000046719EMLSAE00000046719-755647Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771341auto771341Lepeophtheirus salmonispolypeptide
EMLSAP00000010488EMLSAP00000010488Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000010488

>EMLSAP00000010488 ID=EMLSAP00000010488|Name=EMLSAP00000010488|organism=Lepeophtheirus salmonis|type=polypeptide|length=1112bp
MIDPSDTLISSISLYKGVHWSLHLNVLPFLCIYSGWMWVWAFYLGIQENF
ELGMIGFSCIGGIQLLLCLFCQWSVHVMAFVTSKGVSSTEEASVAKVVPT
PNNGSSELVKVFKSGDEDVWIKKRFKQVEFPISQTLRHYFESKGYETEEE
LLKAKNIYNNNTVDMSIPDFQELFKERATMPFFVFQVFCVGLWCLDKYWY
YSIFTLIMLVMFECTLVKQQIRNMSEIRKMGNQPSPIMVWRYNRWRTLSS
EELVAGDXVSIGRXANESLIPCDLILMRGSCIVDESMLTGESIPQLKEPL
ENVTEIDREFEFEADGKLHVLFGGTKMIQHTPPVKNNSGLRANESGVVAY
VARTGFNTSQGQLLRTILFGVRRVTANNLETFIFILFLLFFAIAAAAYVW
VKGIEDPNRNRYRLFLECTLILTSVVPPELPIELSLAVNTSLISLAQLGI
YCTEPFRIPHAGKVEICCFDKTGTLTSDNLVIEGVAGVNESDEVTPIXXL
PTNTIQVLATCHSLAQLEDGMVGDPFHFSSALKRMAVLAGYQVQGSSENS
YIASIKGAPEVIKSMFSNIPSNYDEVYLKHARRGARVLALGFKEMGKMNH
QDIKNITRKDIECDLTFAGFVILTCPLKPDSKAVIKDVINASHRVCMITG
DSALTACHVAKELKFTQHKEVLMLSKDKEQEWKWLNIHSDYGIKVDFSPS
WKDWKEFVDNHDFCLTGEGLSYLLSKNPKYLFRIIPHVCVFARVSPSDKE
QIITTFKSLNFTTLMCGDGTNDVGALKHAEVGVAILSSHSSQPTSSFKPK
KEQSESEDDIKSKLEKFKRNTTPRKRGFDSRQERNHQTQHQIQKLLKEIE
ETDQIQVVKLGDASIAAPFTAKQSSISCIYHIIKQGRCTLVTTLQMFKIL
ALNALILAYSQSVLYLEGVKLSDGQATLQGLLLAACFFFISRAKPPKSLS
KQRPLPNIFNAYTVVTVVLQFLVHFGCLIYLVQQAYILEPRKDEFPDLEG
EFEPNLLNSTVYMISLTLQVSTFAINYRGKPFMKPMSKNKDLLSCLIGTA
SFIAMLSLGWLPDLNEYFGIVAFPDNFRHMLIIVLLLDFLLSLLLDRICL
LLFGEGKLRKPT
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mRNA from alignment at LSalAtl2s696:71522..75681-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000010488-706335 ID=EMLSAT00000010488-706335|Name=EMLSAT00000010488|organism=Lepeophtheirus salmonis|type=mRNA|length=4160bp|location=Sequence derived from alignment at LSalAtl2s696:71522..75681- (Lepeophtheirus salmonis)
ATGATTGACCCATCAGATACTCTAATATCATCCATATCACTCTACAAGGG
AGTTCATTGGAGTCTTCATCTCAATGTTTTACCCTTTTTATGTATCTACT
CCGGGTGGATGTGGGTTTGGGCCTTCTACTTGGGGATACAAGAGAATTTT
GAGTTGGGTATGATTGGATTCTCTTGTATAGGTGGGATTCAGCTTCTTCT
ATGTCTGTTCTGTCAATGGTCTGTCCATGTCATGGCCTTTGTTACCTCAA
AAGGAGTGAGTTCTTACTTTGATCCTTCATTATATCCCCTTTTCTACATC
CTGATTCCATCCAGGTCAGTTCAACAGAGGAAGCAAGTGTTGCAAAGGTC
GTTCCCACTCCAAACAATGGATCCTCAGAATTGGTTAAAGTCTTCAAATC
AGGGGATGAAGATGTTTGGATCGTATTTCAAAAATTAAATACATTTGGGA
TATGGAGAAAAAGCGATTCAAGCAGGTGGAATTCCCCATTTCTCAAACCC
TGCGGCATTACTTTGAGTCCAAGGGATATGAGACTGAAGAGGAGCTATTG
AAAGCAAAAAATATTTATAATAATAATACGTAAGAAAACATTTTGTTTGT
TGTCAATTGTTTCACATAATCTGGATAATGTATCTCTTATTAGAGTGGAT
ATGTCCATCCCAGATTTTCAAGAACTCTTTAAAGAAAGAGCCACGATGCC
GTTCTTTGTGTTCCAAGTTTTTTGTGTGGGTCTCTGGTGTCTTGACAAGT
ATTGGTATTACTCCATTTTTACCCTAATCATGTTGGTTATGTTTGAATGT
ACTCTTGTCAAACAACAAATTCGAAACATGTCGGAAATTAGAAAAATGGG
CAATCAACCCTCACCAATAATGGTATGGTTTTTATTTTAAATCGTTTTTT
ATTATATTCATTTCCTTTCAATTGAGGTTTGGCGTTATAACCGCTGGCGA
ACTCTTTCAAGTGAAGAATTAGTTGCTGGAGACWTTGTTTCTATTGGAAG
AYCAGCCAATGAATCTCTCATTCCGTGTGATTTGATTTTAATGCGAGGGA
GCTGCATTGTGGATGAAAGCATGCTCACAGGAGAGTCTATTCCTCAGTTA
AAAGAACCTTTGGAAAATGTTACGGAAATAGATAGAGAGTTTGAGTTTGA
GGCGGACGGGAAATTGCATGTTCTCTTTGGAGGAACTAAAATGATTCAAC
ATACTCCTCCAGTCAAAAATAATTCTGGACTTAGAGCTAATGAAAGTGGA
GTTGTTGCATATGTCGCAAGAACAGGATTCAATACATCTCAGGGTCAACT
TTTGCGTACTATACTTTTTGGAGTCCGTCGAGTGACAGCGAATAACCTTG
AAACATTCATTTTTATTCTTTTCTTACTTTTTTTTGCCATTGCAGCAGCA
GCTTATGTCTGGGTCAAAGGTACTATACTTTTTTTCCTATCTTATCAATT
ACTTTTAATTTACTATTATATAGGAATTGAGGATCCTAATCGAAATCGCT
ACAGATTATTTTTGGAGTGCACCTTGATTTTGACATCTGTTGTTCCTCCA
GAACTCCCCATTGAACTCTCATTGGCAGTCAATACTTCCTTAATATCTCT
TGCTCAACTTGGTATATATTGCACTGAGCCTTTTCGTATTCCACACGCCG
GAAAAGTCGAAATATGTTGTTTTGACAAAACCGGAACTTTGACATCCGAC
AATTTGGTCATTGAAGGTGTTGCTGGGGTCAATGAGAGTGATGAAGTGAC
TCCAATTGMCYCCTTGCCTACAAATACTATCCAAGTCCTTGCAACTTGTC
ATTCACTCGCTCAACTCGAAGACGGTATGGTCGGAGATCCGTTAGAAAGG
GCAGTGCTGAATGCTATTAACTGGACACTCACCAAAGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACG
CTGTTATTCCAAAGAAGGGAAAATTCCCTGGTATTAAAATATTCCAAAGA
TTCCATTTTTCATCGGCGTTGAAACGAATGGCAGTACTTGCTGGTTACCA
AGTACAGGGMAGCTCCGAAAATAGCTACATTGCCTCTATTAAAGGMGCTC
CTGAAGTTATTAAAAGCATGTTTTCCAACATTCCAAGTAATTATGACGAA
GTGTATTTGAAGCATGCGAGAAGAGGAGCTCGAGTGTTGGGTAAGAAATA
TTTTGTTCCCTAATAACTTGGTCAAATAAGGTAACAGTTTCTATTTTAAC
TTGCTGCAGCATTGGGATTTAAGGAAATGGGTAAAATGAACCATCAGGAT
ATAAAAAACATAACTAGAAAGGATATTGAATGTGATTTGACCTTTGCTGG
ATTTGTCATCCTCACATGTCCTTTAAAACCTGACTCAAAGGCAGTTATAA
AAGATGTAATTAATGCATCGCACCGGGTATGCATGATCACCGGTGACTCT
GCTTTAACTGCATGCCACGTAGCAAAGGAATTGAAATTTACTCAACACAA
AGAGGTTCTCATGCTTTCCAAAGATAAGGAACAGGAATGGAAATGGCTTA
ATATTCATTCAGATTATGGGATAAAGGTAGACTTCTCACCTTCCTGGAAG
GATTGGAAAGAGTTTGTTGATAATCACGACTTTTGCCTCACTGGAGAAGG
ACTTAGTTATTTACTTTCAAAAAATCCAAAATATCTATTTAGAATAATTC
CCCATGTCTGTGTCTTTGCCCGTGTATCGCCATCAGACAAGGAACAAATC
ATTACTACTTTTAAATCATTGAACTTCACCACTCTTATGTGTGGAGATGG
AACGAATGATGTGGGCGCATTAAAACATGCGGAAGTTGGTGTTGCCATTC
TATCGTCCCACTCCTCTCAACCAACGTCATCCTTTAAACCAAAGAAGGAA
CAGTCTGAGTCTGAAGATGACATTAAATCAAAATTAGAGAAATTTAAAAG
AAATACGACGCCGCGTAAGCGAGGATTTGATTCCCGTCAAGAAAGAAACC
ATCAAACACAACATCAGATACAAAAACTTCTCAAAGAAATTGAAGAAACG
GATCAAATTCAAGTTGTCAAACTAGGAGATGCCTCCATTGCAGCTCCCTT
CACTGCAAAACAATCCTCTATCTCATGTATTTATCATATTATCAAGCAAG
GGAGATGCACTTTAGTCACCACTCTTCAAATGTTCAAAATACTTGCGTTA
AACGCTCTTATTTTGGCGTACTCCCAATCCGTTCTATACTTGGAGGGAGT
TAAGTTGTCAGATGGTCAAGCAACACTTCAGGGTCTTCTTCTGGCAGCCT
GTTTCTTTTTCATTTCAAGAGCTAAAGTAAGAGATGTCATTTTTTTTAAG
TCTTTTTTTTAGCATAAAAATATGCATGATCCTTTATTATTTTCACATTA
TATAGCCTCCCAAATCCCTTTCCAAACAACGTCCTCTTCCTAATATTTTC
AATGCATATACTGTGGTTACCGTGGTTCTACAATTCCTTGTTCATTTCGG
ATGTCTGATATATTTGGTGCAACAGGCCTATATTCTTGAACCAAGGTATT
TGTTTGCTCTATTCCCTTCTTTCAATTCTTATACATTACAATGCTTTATT
CCTACACCTAAAGAAAAGATGAGTTCCCCGACTTGGAAGGAGAGTTTGAG
CCAAATCTTCTAAATAGCACAGTCTACATGATATCCCTCACTCTACAAGT
ATCCACGTTTGCAATCAATTATAGGGTATGAGTTTCCCTTATTCGTCTTC
AATCATAATGCTAAGTCACTTATTCTTACTTTAGGGTAAACCCTTTATGA
AACCAATGAGTAAAAATAAAGATTTGCTCTCCTGTCTCATTGGTACAGCC
TCCTTCATTGCAATGCTCTCACTTGGTTGGCTACCTGATCTGAATGAATA
TTTTGGAATTGTTGCATTCCCTGATAACGTAAGGTTTTTTTTTCTCATTC
CCCCTTTCTAAAATCTCCTAAAATATAATGAGTCTCTTCTCCTAAATAGT
TTCGCCATATGCTCATCATTGTATTGCTATTGGATTTCCTCCTATCACTT
CTATTGGATCGTATTTGTCTCCTCCTGTTTGGCGAAGGAAAACTTCGAAA
GCCTACATAA
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