EMLSAT00000011425, EMLSAT00000011425-707272 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000011425
Unique Name	EMLSAT00000011425-707272
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s78	supercontig	LSalAtl2s78:1257674..1262911 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000011425 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000011425	EMLSAG00000011425-694191	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000051085	EMLSAE00000051085-760013	Lepeophtheirus salmonis	exon
EMLSAE00000051086	EMLSAE00000051086-760014	Lepeophtheirus salmonis	exon
EMLSAE00000051087	EMLSAE00000051087-760015	Lepeophtheirus salmonis	exon
EMLSAE00000051088	EMLSAE00000051088-760016	Lepeophtheirus salmonis	exon
EMLSAE00000051089	EMLSAE00000051089-760017	Lepeophtheirus salmonis	exon
EMLSAE00000051090	EMLSAE00000051090-760018	Lepeophtheirus salmonis	exon
EMLSAE00000051091	EMLSAE00000051091-760019	Lepeophtheirus salmonis	exon
EMLSAE00000051092	EMLSAE00000051092-760020	Lepeophtheirus salmonis	exon
EMLSAE00000051093	EMLSAE00000051093-760021	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto780575	auto780575	Lepeophtheirus salmonis	polypeptide
EMLSAP00000011425	EMLSAP00000011425	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s78:1257674..1262911-

protein sequence of EMLSAP00000011425

>EMLSAP00000011425 ID=EMLSAP00000011425|Name=EMLSAP00000011425|organism=Lepeophtheirus salmonis|type=polypeptide|length=764bp
KEDIPYIAPRPRAYTAGASISTEKFDTLSLSSLKRYTSVTSLVSNAMDRV
NHAVIPIRKSEVIKLQIFVTVLFLLIVLFVGTAHVTHYRHVGEMRLFGRV
KLEESLGRIFIFNAEDVLTVEAELGGQFTQGVHPYPCKNTQNTKKGSSSF
NLTDSSLKNEELSPKKEDNICIEWKNQARLEMKKSLLKEGMNCYSLHWQX
LHEDVSPIDCFPVGKDHGHWYGGGETAGAAWPLDKGQIRNSPFVTGDEDN
TEWGNVIKKYFLNSKGFSLTIEDHTPLFVSMNESKFCIQARFDNFAYYYH
RFNLPRLNYTICVEQDIKTVHSKLLPESFWEGHSQKDLDTLQHLLEKPIW
QLNSKNEGFPVSHDLLEKYIEEVLGRRKFQNDNDRGYLLLDHRWQKYMGD
FEFNNKAFPDIKKTLQIIKDSGFQLVLTVNPYVSTESKNFRVGVQKEIFV
KERNSPKNVPALTWFDNIPSTAFLDITNNMTVQWLQTRLEKLSKTLNNEA
LFYLDIGNTFHVPTYFNFSVPLDNPDLYGEHFTKHVMDQVPVIGVSGASS
KRPKAPAFVFLSTPKSNWSNLQTIIPKVLHLSVVDYPFVNPGPVGGVPSD
SGILVQFELYVRWWQLNTFXPMLXFLXPPTLYPLTKISKVAKKLKSIRKD
IVNPCLLTFSNGAMQTSLPVIRPLWMLNPNDSVALTIDDQFMIGDSILVA
PVLEEGKRKRDIYLPTGSGKKAIWKSGFNGGNFFKGGRWLRDVEAKLEDV
MFFIRQKNDTLPEL

mRNA from alignment at LSalAtl2s78:1257674..1262911-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000011425-707272 ID=EMLSAT00000011425-707272|Name=EMLSAT00000011425|organism=Lepeophtheirus salmonis|type=mRNA|length=5238bp|location=Sequence derived from alignment at LSalAtl2s78:1257674..1262911- (Lepeophtheirus salmonis)
AAAGAAGACATTCCTTATATTGCKCCTCGACCTAGAGCCTACACAGCAGG
AGCCTCCATTAGTACGGAAAAGTTTGATACTCTGAGTCTTTCCTCACTCA
AACGCTATACCTCAGTCACATCCCTTGTCTCCAATGCAATGGATAGAGTG
AACCATGCTGTCATTCCCATCAGAAAGTCGGAAGTCATTAAGCTTCAAAT
TTTTGTGACTGTTTTATTCCTTCTCATTGTGCTATTTGTTGGAACTGCAC
ATGTTACTCATTATAGACACGTTGGTGAGGTAAGAATTTTGTATGTTCAA
TTTATGAAATTAATGAGCATTTATTCGATTACATATGTATATATACATTT
TCATGCGCTGTCTATTTGATTTTAATTGATAAATTACACACATGTTGACA
TTGAGTAACTCACTAATAGAAACTTTTTATGTACAAATATTATATTCATT
GTATAACATTGTTGGCTCAGTCTTTAAAGAATTTTAATCGTGGAAGTCAT
AAATCATTAGAGCAATGTATTATTTTGAAGAATATACCATCATTTGATAC
TGAACAAATAATACACATATGTGCAAATAGATTTCTTGATGAAATATGTT
TTTTGCAATGACTTGTAAAAGTAGAATACCATGCGAAAAGTATATGTTGC
TTATTTTGTCAAGCTCCGAAATATAAATTAATAATTATTCTTTCCTTGTT
ATTCATTCCTTAATTATTGTACGAGACAACAATGTAAATGATAAATTTTT
TTTGTTAATTCTACCGAAGGGGTTATACTTACTGGTTATTCCCTCATGAT
TATAGTGTTAATCGGTTAGTACTAGTCACAGTTTAAAATACACGGAGATT
TAACTCGTTTTAGTTTATATAAAAGGGGTTATTTCTAATGTTTTAAACTG
ATCCGAGACATTTTAATATCATTAAGTCACTCAGTTTTTATCCAATTATA
AATAGTTTGTAGTATTTTTCTAATACATTTTTAATGCCAATTTAGTCATG
TGGTAGAGTAAAGCAAGAAATGAAAATTACATTTTTTTTTTGTAAATTAA
ATATACTTTACTTCACTATAGTAAAAAAATTGTTTGTAAATTCAACATAT
TAGACACTTATTCAAGCTTAAATAAAATTCCTATTTTATAATGAAAGAAA
CATCATTTTTAGTATTTCATTAATAATATTTGACATACAATTTTTATTTT
TAATACATGTTTTATTTAACATTACCAAATTTATAAGTCCATATTTTTGA
ATTTAATGAACCAATTAACTTGAAAATTTTACAAGTATTAAGTATATATA
TTTTAAATATGTTGTTAAAATATTAGGCAATTTTAAGATATTTAAATAAA
AATGTATTTATTCACGATGGAGGAAGGCGCAATGACTAAATTTGAATAAA
ACCCCTACCAGTTGGATTCTCAATCTGATTTTTAACNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
TATTGTAAGTTACTTTTGGCATTTTMTGCGGGATTATAATAAGTGAAGTA
AAAAATCCATTCTTTTTCAATTAAAAGGCTTTGGTAAAGTGTATCACGTG
TTGCATAAGTGCGATCGGTTTACGATGGATGGTGTTAAAAAGTTAACACT
TCGTGCTAAAAAAAACTTCATAGACAGTTTTGTGGTTATTTGACTCAGTT
TTTTTTGAGCGTATACAAAGATGAATACCAGCAAAAATAACATAAACCAT
ATTTTACAGTTTTTCTATGATAATGTGGAAATTGCAGCCAGGAAACTGAA
AATAGTACTTATGGTCCTGATACTATAGTAGGTTGTCACGGTTTCGTTTC
GGTAACTTTGATGTCAAATGCCAACGGTAGACAAAAATGGATAAAATAAT
AGCAATCGTCGAGTCTGAGCGTAATATAAGCACTGTTTTGATTGCTCAGG
AGATAAATATTAATAATAAATAAAAAAAATCAGTTAAAAATAATGGATTT
CTTTTTCCTAAATCTTATATGAGGTGTGTTCAAAAAGTTATGATACTTTT
TATTTTTTTAGAAAAAAATATTTATTTAATCATCAATATTTATGTTGTCC
CCTTCAAAAAAGTCCCCCTCAGATACAATACACTTGTGTCAACGATTTTT
CCATCCTTGAAGCTCTTTTCATGAGCGCTATTCGGTATAGCCTTGAGCTC
TTCCAGCGATGCAGTCTTAATCTTCTCAATCATTTCAAATCTCTGTCCTA
TGATAGATCTCTTCAGTTTTGGGAACAAGAAAAAGTCACATGGGGCCCAA
TCTGGTGAATATGGGCATTGAGGGATGATTTTGTTGTTTTTGGTCAAAAA
ATGCGATCATTCTTGTATCAAAATTAAGCAGTTCTAACATATATGTCTCT
CACAAACTAATCAAATGTATTATATATGTAGCTGCAATAGTAAATACATA
TATGTTCGTGGCGAGAGTAATAACATAAAAAAAAATGGAACATATCAAAC
GTAGGAGGGGGGGTTCTTGCTTGCGAAATTTGAAAAGTCATCTAACTTTT
TGGATACATTTCGTAAATCTAATAATCTTGGAATCTTTGGACTTGGAATA
ATCTAATTCTTGGACTGATGTACCAAATGATTTTAAACTTTCATATTTTT
ATACCGAAATAGCCAATTCTGAGATATGAGTTGTTGTTTTTTGTTTTGTT
TTTTATGCTTAGTGTGGAATGCCCCCACACCGAATAATCAGCTGAAATTA
TAATTATTATTTACAAATTTATAAGTTTTTTTTCCTATCTCTTACAGATG
CGCTTATTTGGTCGGGTAAAATTGGAAGAGTCCCTTGGTAGAATTTTTAT
ATTCAATGCAGAAGATGTATTAACAGTTGAAGCTGAGCTTGGAGGCCAGT
TTACTCAAGGGGTGCACCCCTATCCCTGTAAAAATACTCAAAATACGAAA
AAAGGATCCTCGAGTTTTAATTTAACAGATTCTTCGCTCAAGAATGAAGA
GTTATCCCCAAAGAAAGAGGATAACATCTGCATTGAATGGAAAAATCAGG
CCCGACTCGAAATGAAAAAGTCTCTTTTAAAAGAGGGAATGAATTGTTAT
AGTCTACATTGGCAGMCACTTCATGAAGACGTCAGTCCAATTGATTGTTT
CCCTGTTGGAAAGGATCATGGTCATTGGTACGGTGGAGGAGAGACAGCTG
GCGCTGCATGGCCATTGGATAAAGGACAGATACGTAATTCTCCTTTTGTG
ACTGGCGATGAGGTAATTTGATTATAGTTGTATTATTTTTGATTGTACAT
ATTTTTGAATAGGACAATACAGAATGGGGGAACGTGATTAAAAAGTATTT
TCTTAATAGTAAAGGCTTTTCTCTGACCATTGAGGATCACACTCCACTCT
TTGTTTCTATGAACGAAAGTAAATTTTGTATTCAAGCAAGGTAATTATTT
TCTAGGGTTATGTCGTTTCCATTCTTCTCATTCGATTATTTAATCCTTAG
ATTTGATAACTTTGCTTACTACTATCATCGATTTAATTTGCCTCGATTGA
ACTACACGATTTGTGTAGAACAGGACATTAAAACTGTTCATTCCAAACTT
CTTCCTGAGTCATTTTGGGAGGGTCACAGTCAAAAGGACTTAGATACACT
TCAACATCTTTTAGAGAAGCCCATCTGGCAACTCAACTCTAAAAATGAAG
GATTCCCCGTATCGCATGATCTACTTGAAAAATACATCGAAGAAGTACTT
GGACGTCGAAAGTTTCAAAATGACAACGATAGGGGATACTTACTCCTTGA
TCATCGATGGCAAAAATATATGGGAGACTTTGAATTCAATAACAAAGCCT
TTCCAGATATAAAAAAAACTTTACAAATTATTAAAGATAGTGGCTTTCAG
CTTGTTCTAACTGTGAATCCATATGTAAGCACTGAGTCAAAAAACTTTCG
AGTGGGAGTTCAAAAGGAAATATTTGTTAAAGAGCGCAACTCTCCAAAAA
ATGTTCCTGCTCTCACGTGGTTTGATGTAAGTGGATTGCAATGGATAATA
ATTATTTGAACTTATTTATATTATTTACATTTAGAACATTCCAAGTACGG
CATTTTTGGATATAACGAACAATATGACTGTGCAATGGTTACAAACTCGC
TTAGAAAAACTAAGCAAGACCTTGAATAACGAGGCATTGTTCTATTTAGA
TATTGGGAATACTTTCCATGTTCCGACGTATTTTAACGTGAGAAGTTTGA
ACGAAATTTGTTTTATTTCTCAACCTCTAAACTAACTTTTTTCTTTTTCA
TTGTCTTTAGTTTTCTGTTCCATTAGACAATCCGGATCTGTATGGAGAAC
ACTTCACAAAGCATGTAATGGACCAAGTTCCAGTGATTGGAGTTAGTGGT
GCTTCCTCAAAGTAAGTACATATCAATAAAATTAAATACACAAATAAACA
TATCGGATCATATTTACATTACAGACGTCCAAAGGCTCCGGCTTTTGTCT
TTTTAAGTACGCCTAAGTCCAATTGGTCCAATTTACAAACCATTATTCCA
AAGGTATTACATTTGAGTGTCGTTGATTATCCGTTTGTTAATCCCGGCCC
CGTTGGTGGAGTGCCATCAGATTCAGGTATACTGGTACAATTTGAACTAT
ATGTCAGATGGTGGCAGCTGAATACATTTTTKCCCATGCTKCKCTTCCTT
CASCCTCCGACTCTCTATCCATTAACAAAGGTAACTTTAATTTACATATT
TGTTTCTTTTGAGCTATGATAATTTGTATTTCAGATCTCAAAAGTGGCAA
AAAAGCTGAAAAGCATACGCAAGGATATCGTCAATCCATGCTTACTTACG
TTCTCTAATGGTGCGATGCAGACATCATTGCCGGTTATCCGTCCTCTTTG
GATGTTGAATCCAAATGATAGTGTTGCCTTAACTATAGACGATCAATTTA
TGATTGGAGATTCGGTATGAAAAATGTTTGATATTATAAAATGTGATATG
AAATAAATATTCAACTTTATCTTATACATAGATATTGGTTGCCCCTGTCC
TCGAAGAAGGTAAAAGAAAAAGAGACATTTATTTACCTACAGGAAGTGGG
AAAAAGGCCATTTGGAAGAGTGGTTTCAACGGTGGTAACTTTTTTAAGGG
GGGAAGATGGCTACGAGATGTTGAAGCCAAATTAGAAGATGTCATGTTTT
TTATTCGTCAAAAGAACGATACTCTTCCAGAGCTTTAG

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