EMLSAT00000011824, EMLSAT00000011824-707671 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000011824
Unique Name	EMLSAT00000011824-707671
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s829	supercontig	LSalAtl2s829:38411..43233 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000011824 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000011824	EMLSAG00000011824-694590	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000052916	EMLSAE00000052916-761844	Lepeophtheirus salmonis	exon
EMLSAE00000052917	EMLSAE00000052917-761845	Lepeophtheirus salmonis	exon
EMLSAE00000052918	EMLSAE00000052918-761846	Lepeophtheirus salmonis	exon
EMLSAE00000052919	EMLSAE00000052919-761847	Lepeophtheirus salmonis	exon
EMLSAE00000052920	EMLSAE00000052920-761848	Lepeophtheirus salmonis	exon
EMLSAE00000052921	EMLSAE00000052921-761849	Lepeophtheirus salmonis	exon
EMLSAE00000052922	EMLSAE00000052922-761850	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto770211	auto770211	Lepeophtheirus salmonis	polypeptide
EMLSAP00000011824	EMLSAP00000011824	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s829:38411..43233+

protein sequence of EMLSAP00000011824

>EMLSAP00000011824 ID=EMLSAP00000011824|Name=EMLSAP00000011824|organism=Lepeophtheirus salmonis|type=polypeptide|length=720bp
MKNMITNQSPIVFVLIFFTLQTLASXRPSQSIFELRLKNLIGAPDASPTK
FRVCLKHFQQRIDPNDECTFGEQFTPALRQRSGGELHRMISFPLDFKWPG
TFSLIIEAYHQNNKSSDSLISRVATQQWLQASSNWTQGQHSQNYTRLDYE
YRVLCSSHYYGNDCDTLCRPRDDTFGHYICGSQGEKICLPGWEKDPSEPE
WDYCTKAICLQGCHSEHGECSSPNECKCRTGWTGPLCDQCVRYPGCEHGY
CNKPHECICYDGWGGLFCKNDLNYCTNHEPCRNGATCYNTGQGSYTCNCP
PGFTGINCETRITNECSHQPCLNGGTCQGKGSSNYTCVCPVGFHGDHCEK
RAQXCHDSPCQNNGACTNGPQGYICGCPHGFSGINCEIKLDACRADAPCL
NNGKCIPVGEFYRCECPLGFTGPNCEENVDDCSSSPCRNSGTCIDLISDF
KCYCPPGFTGLQCEINVNDCRRHPCFNGGTCRDGXNDFICTCPHGFTGRD
CSIEINECLPNPCMNDGFCVDRMDDFRCHCPRGYSGKTCNILPDGTVLAS
PRSQDDDDSSHKALIGALSGIVPTIVIIGVLVVLCQKRRNRRDSEQIRVN
ADAARENELNSVNSYKKSKMLDDHMIVNSLDFPKQKRINTNIADEESFSA
KDGSIVYKQMMRDDNKRLNSEYKKGGCSSENLLGYNESNNRMRENPLXSK
FDRSXSTLCSGASSSNNSSR

mRNA from alignment at LSalAtl2s829:38411..43233+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000011824-707671 ID=EMLSAT00000011824-707671|Name=EMLSAT00000011824|organism=Lepeophtheirus salmonis|type=mRNA|length=4823bp|location=Sequence derived from alignment at LSalAtl2s829:38411..43233+ (Lepeophtheirus salmonis)
GCGCCTTCCGTCGTGGAAAGCGCGCCGGGAGTGCTTCCGTTCTTTTGGTC
AAGAAGTAGTGGAATTGAATTAGTTTTGTTTGAAGTAGTGACATAGACAG
ACGTGTGAGAGTTATTTAGTTACTTAGTGATTCCGCCTTGTTTCATAAAT
ATTGCAATCCTATATTCATCAGCGATCTACAGTGTGGAGATTCATCAGAT
AATATATTTACATAGGTCTATGTAAAAATGATTGAGAGAAAAAGGGTGAT
AATAAAGTGATTTCCACGCAGCCATCAAAATAAAAGATATCGTCGGTGTG
TTTAACTCACGCAACCTTTCACATTCTTGATTGATTCGTACTCAATTGTA
TTTAAGTCTCCGTCATGAAGAACATGATTACTAATCAATCCCCCATCGTT
TTCGTCCTCATATTCTTCACTCTCCAAACTGTAAGTAACAGCCCTCATCA
TCCCGCCCTCGCCATCCCCAAGAACTCACCGCCTTAACTAACATATTCTC
TGTTCTTTATAGTTGGCCTCTCMCCGCCCCAGTCAAAGTATTTTCGAGCT
CCGACTCAAAAACTTGATCGGAGCNCCTGACGCATCCCCGACCAAATTTC
GAGTTTGCCTCAAACATTTTCAACAGCGGATCGATCCCAATGATGAATGT
ACGTTTGGAGAACAGTTTACTCCTGCTCTACGTCAGAGAAGTGGGGGTGA
ACTCCATCGTATGATCTCATTCCCTCTGGACTTTAAATGGCCGGTAAGAT
GCGGAATATTTATGTCCGAATGACATCCCCTCTAACCTATCTTTTTTTTA
ATCATATAAAGGGAACTTTCAGCTTGATCATCGAAGCCTATCATCAAAAC
AATAAATCTTCCGGTAAGAAACGACTCCCATATATCATTTTTGTAGAGTT
ATTCCTCCTGAGGCGAGGAGATATTTATATATGTATATCCAGATCGTTGG
AATTACATCAAAATTAATTGCTATTTATACTATCAAACACAAGAAACAAG
AATTATTGTTATTCTTGTTTCTAGTTTTTTAATGTTCAAAGACAGAATAA
TTACAAGTCATTTGTGCGGCATTTACTTTTATGTTTTTTGCTTGTATAAA
TTGCCTTATAAATTGCTTATTTTATGAGGATTGACAAAATTGACCTAATG
ATAATGAGAAAACAAAAAAGACTGATTTGGGTAAACCGGCGGGGKAGTAC
ACAAAAATTTGATTGTTATTAATTTGTGTGTTTCCTCCTTGGGAAGAGTT
GCTATGCTATGATGTATGTATCTCTCACCCCTGAAGGTAAAGAGTAAAGA
AAAAATACAGGGGACAATTTCCCTAAATCATTTCTCACACTCTGCACAGA
TATTGTTTTTCTCTTTCTCTGTTGTTTGAAACACAAGAAACGATTCTACT
CTCTACAACCCCCACATATGGTTGTTGGGCTGACCGGAAATATCCCATTA
TTTTAAGGGAATCAACTTATTATTAAATCTCTTTTGAAGAGTGATATGTT
TTTTAATCACCCTCAAAAATTTTCTATTTTTCAATCACGCTAGACGTTAT
CAAAACTCTTAAAGGGAGAAGTTATAGGCACATACTCCATAGTAGCTAGT
TAGAAGAAGCAACATATCCCACTGTGATCTCCTATCAAAATCTAAAATCA
CCCTCTTAAAAATAGCACATAACTTTTGTTAACAATATATATATATACAT
TTTTTCTACATGTTTTTTGTGTGTAACTTGAACTAACGATCCTCTTTTCT
TCTTTCCCTTCTCAGATTCATTAATAAGCCGTGTAGCTACTCAACAATGG
CTACAAGCAAGCTCCAATTGGACTCAAGGCCAACATAGTCAAAACTATAC
TCGACTCGACTACGAATATCGTGTACTCTGTTCCTCACATTACTATGGTA
ATGATTGTGATACACTCTGTCGTCCTCGTGACGATACCTTCGGACATTAT
ATCTGTGGATCACAAGGGGAAAAGATCTGTTTACCCGGTTGGGAAAAGGA
TCCTTCAGAGCCGGAATGGGACTATTGCACGAAAGGTAGGGCTACTTTAT
ATTTTTGTATATGGATTTTTGGAGGGAAAATTGCCCTTTAATATCGATCA
TAATCATTGTTTAAGTGAAGGAATTATTAGGGAGGAGGATGGGTAATCCT
CTCTTCTAACTTAGAGTCATCTGGGTTACAACAAAAGCATATAGTTGTGT
CGTAAAGAAGCAGATGGATATTATATATATATATATTTAGGGAAAAAAGA
GGCGCAGCTGTCGTTGGGAGKAGTTGAAGCGTTGCTCCTCACTCTTCTAT
TTCTTCTTCTTGTTCAACAACTCACGACGACCCCAGCTGACTAAGTTACA
GTAGCGATCAATCCACATCTGTCCTGAATTGTTATATTTTACATGAATTC
TTAAGAGTCTTGAATTTTTTTTTTTTATCTTTTACTTCTTATACCGTAGT
ATAAACTGCAATAAGTAAATAACCTAATGATGATTACTCAAGTCTTTAAA
AAAAATTAACTAACTTGCTTTTTTTGTAAAGACTTCNTATCYTTTTATYC
CCGCCACTTTTCCCCCATTGACAAAGAAAGCAACAGGCATTTAAAAAACC
TGCAACTTACCGATATTGATCTCTTTCTTTTTTTTAAAAGAACAGAAAAA
TTGCAGCTGCCTTTATATGTATACACACACACACATATATATATATATAA
CGTCTCTTAATCTTTCAATTATTTAAAATATAATGAAGAATATTCAGCTC
TGAAGGAAATTAACAAAAATATATTCCGGAAATGAAAAAGTGTTTCGTTC
GTTTTAAATTACCCGGATACTCACACTTCACTTAAATGTATTTATTTTTT
GTAAACCCAGTCATTTCTCAATTCCTTTTCAATAATTGCTCCTTTTATCT
TTGCAGCCATTTGTCTACAAGGATGTCATTCGGAGCATGGAGAATGTTCA
AGTCCCAATGAGTGCAAGTAAGTTATTTCTCTTTTTTCCTTGATATAATA
GTGGTTTTTACTTTAAAGAAACAAAGTAATAGATTACATTTTTTGAGGCA
AAGAAGAAAATATATATTCAAATGAGATTTGTTTGTTTTTTTGTCTTGAT
TTATGAGAAAAGAAATTATTTTTCATTCACATAAAACCACAGAGATTTGT
AAAATATGTACATTTCCCTTTGACAAGTTTTTTAAACATATTTTTCTTCC
TCTTGTAGGTGTCGTACAGGATGGACTGGACCTCTTTGCGATCAGTGTGT
CCGTTATCCAGGATGTGAACACGGATATTGTAATAAGCCTCATGAGTGCA
TTTGCTATGACGGTTGGGGTGGTCTATTTTGTAAAAATGATCTTAACTAC
TGTACTAACCATGAGCCTTGTCGTAATGGAGCAACCTGCTACAACACTGG
ACAAGGTTCCTACACTTGTAATTGCCCTCCTGGATTCACTGGAATCAATT
GTGAAACTCGTATTACCAATGAATGCTCTCATCAACCCTGTTTGAACGGG
GGAACTTGCCAGGTAAAGACTGTTTCTATTATTAGAGGCGTTTTAGACGT
AGCTCTTCTTTGTAATATTCTCTATTACTTCTTCAAAGATATTTATAAAT
AGATGATTTTACTAATAATTCTTTTCTATCTCTAAATTTTCCAGGGAAAA
GGATCGAGTAATTATACTTGCGTTTGTCCTGTTGGATTCCACGGAGATCA
TTGTGAAAAACGAGCTCAAMCCTGCCATGACTCACCATGTCAGAATAATG
GTGCCTGCACTAATGGACCTCAAGGATATATTTGTGGATGTCCTCATGGA
TTCAGTGGTATTAACTGCGAAATTAAACTTGATGCTTGCAGAGCTGATGC
TCCATGCCTCAATAATGGAAAATGTATTCCTGTCGGCGAATTCTATCGTT
GCGAATGCCCTCTTGGATTCACTGGGCCTAACTGCGAAGAAAATGTGGAT
GACTGCTCCTCAAGTCCCTGCAGGAATAGTGGGACTTGCATCGATCTTAT
TAGTGACTTTAAATGCTACTGCCCTCCCGGATTTACTGGACTGCAATGTG
AAATTAACGTGAACGACTGTCGAAGACACCCATGTTTTAACGGTGGGACT
TGCAGAGACGGAGKAAATGACTTTATTTGCACTTGTCCTCACGGCTTCAC
TGGAAGAGACTGTTCTATTGAGATTAACGAGTGTCTTCCTAACCCCTGTA
TGAACGACGGRTTTTGTGTGGATCGCATGGACGACTTTCGCTGTCATTGC
CCAAGGGGCTACTCAGGCAAAACCTGTAATATATTACCCGATGGAACTGT
TCTTGCTTCTCCAAGAAGTCAAGATGATGATGACAGTAGTCATAAAGCTC
TCATAGGAGCACTATCTGGAATTGTTCCAACTATTGTCATAATCGGAGTC
CTCGTTGTTCTTTGTCAAAAACGTCGTAATCGTCGTGACAGTGAACAAAT
CCGTGTAAACGCGGATGCTGCTCGTGAGAATGAGTTAAACTCCGTTAATT
CTTACAAAAAGTCAAAAATGTTGGATGATCATATGATTGTTAATTCCCTG
GATTTCCCCAAACAGAAGAGAATTAATACCAATATAGCAGATGAAGAGAG
TTTTTCAGCMAAGGATGGAAGCATCGTCTACAAACAAATGATGCGAGACG
ATAATAAAAGACTCAACTCTGAGTATAAAAAAGGAGGTTGCTCTAGCGAG
AATCTTCTTGGTTATAACGAATCCAACAACAGGATGAGGGAGAATCCTTT
AYCATCCAAGTTCGATAGATCTMCATCCACTCTCTGCAGTGGTGCATCAT
CATCCAACAACTCATCTAGGTAA

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