EMLSAT00000012267, EMLSAT00000012267-708114 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000012267
Unique Name	EMLSAT00000012267-708114
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s896	supercontig	LSalAtl2s896:406762..412418 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000012267 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000012267	EMLSAG00000012267-695033	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000055059	EMLSAE00000055059-763987	Lepeophtheirus salmonis	exon
EMLSAE00000055060	EMLSAE00000055060-763988	Lepeophtheirus salmonis	exon
EMLSAE00000055061	EMLSAE00000055061-763989	Lepeophtheirus salmonis	exon
EMLSAE00000055062	EMLSAE00000055062-763990	Lepeophtheirus salmonis	exon
EMLSAE00000055063	EMLSAE00000055063-763991	Lepeophtheirus salmonis	exon
EMLSAE00000055064	EMLSAE00000055064-763992	Lepeophtheirus salmonis	exon
EMLSAE00000055065	EMLSAE00000055065-763993	Lepeophtheirus salmonis	exon
EMLSAE00000055066	EMLSAE00000055066-763994	Lepeophtheirus salmonis	exon
EMLSAE00000055067	EMLSAE00000055067-763995	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto777357	auto777357	Lepeophtheirus salmonis	polypeptide
EMLSAP00000012267	EMLSAP00000012267	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s896:406762..412418-

protein sequence of EMLSAP00000012267

>EMLSAP00000012267 ID=EMLSAP00000012267|Name=EMLSAP00000012267|organism=Lepeophtheirus salmonis|type=polypeptide|length=442bp
MQTDVIRVPGLSSDLNQQITKFDSSEFDDDKEVIGTDAEGVWAPEIEQSF
QEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSH
IQVLARRKVREIQAKLKVPGNGSTASYIDQAHKEKALQSMQQMSSAQIVS
ATAMQAKSLAIPPGVGIHHTPVSYAGSFWQPGLHSGSTQDIKPFANSSFG
ITDKPGAPSGIISAQTSSTPPWQGRSIGTQKLXLLEFTSYVESQANEPET
YHKHHFVHIGXVVXSSDPVLEPIDVRQIQDKFPEKKGGLKELYEKGPTDA
FFLVKFWADLNTNISEEAGAFYGVTTTYESNDNMTIQCSTKVCSFGKQVV
EKLETEVGKFENGRFLYKIHRSPMCEYMINFIHKLKHLPEKYMMNSVLEN
FTILQVITNRDTQETLLCVAYVFEVSTSDHGAQHHIYRLVKD

mRNA from alignment at LSalAtl2s896:406762..412418-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000012267-708114 ID=EMLSAT00000012267-708114|Name=EMLSAT00000012267|organism=Lepeophtheirus salmonis|type=mRNA|length=5657bp|location=Sequence derived from alignment at LSalAtl2s896:406762..412418- (Lepeophtheirus salmonis)
ATGCAAACAGATGTAATCCGCGTTCCTGGATTATCTTCCGATCTTAATCA
GCAAATTACCAAATTCGATTCATCAGAGTTTGATGTAAGGATCTACCTAC
ATATTTAAAATGGATTGCTTATAATTTATATATTTTAATATTATAGGATG
ACAAAGAAGTTATTGGTACTGATGCAGAGGGAGTCTGGGCACCTGAAATT
GAACAAAGCTTCCAAGAAGCCTTAGCCATATATCCACCATGTGGACGAAG
AAAAATAATTCTATCAGATGAAGGAAAAATGTATGGTGAGTATTGTTGAT
ATTTAATCATTTTCTACGAGTCACCTTCAGGAAGAAGATGATTCAAATTA
AATCTTCATTTATTGGTTCAATGATGTTGGATATTATTACTTATTCAGTG
CATATATATATTAGTGTTGGGGTTTCTCTCTGAAAATCCTATACCGTTAT
GAATTTCAGTGGTCCTTTAAAGAAGTTCAATTTGGATCGGTTCTATAGAC
GAATTAAAAATGTGAGAAGTAAATGGGTTGTAACTCAAATATTGACTTTA
CAGAATTATGCTTGGAAACTCTATTATTTCATTATGAAWAATGGGGTTAT
CCAATTTTTACAAAAAAAAAAAAAATGGATCTGAGAAATTCATTTCAACA
GTCTGAATTTCGCTGTTTTTAAGTGTTATTATTAAATATTAGACTTCTAG
GATGGCATATAGGGAATAACACGAATATTTTTAATGTTTGAGATACTAAA
TTGTTGACGAATTGTTGATAACGTCAGCTGTGTGAACAACGGAAATGAAA
AATAACGTTATGTAAATTTGAATGTGTTGCATAAAACAAAATAGTAGATA
AATTAGGTCTATATATTGTGACTGCGAAAGTTCGATCTATATATATTGAG
ACTGAAAAGTTTATCTACGATTTAAAAACGATTAAATGGCATTACAAAAT
CGTGGTTTACACCAAAATATTGGTCCAAATCGTTCGACAAAAAATCACAT
AAGACCGAACCGGGGAAGAATTCGGTCTTGAACCGAGTCTCAATACTAAT
ATTTAAATATAACTTAACAATTATGATAATGCATTAGATTTAATTATTGT
ATTTTTTGTTTCTTTAGGGCGCAATGAACTTATTGCTCGATACATCAAGT
TACGAACTGGGAAAACACGAACTCGAAAGCAGGTATCATCTCACATCCAA
GTTTTGGCAAGAAGGAAAGTTCGAGAAATTCAAGCAAAATTAAAGGTAGG
ACTGCTGCACATAAAGCTCTTTTTCCCCACTTGATGCTGAAGGCTTTCTC
TAGTAGACGAAATCATGTAGTAAAAATAAATACACTTATTATCTTAGTTC
TGTACTCTCAAGTTTCTAATTTTATTATACCTAATTATTAGCGGTGTCTG
CTAAAACACATCCTTCCCCTACAATACACATATTCATGACACACTTAAAC
CCCCTCTAACTCATTACACAATGTATATATATATATAAAAGTCAATTTTT
ATATGTGCTCCGTCAACATAAAAACATTCCTGAACAAACATCAAGAAAAG
GAGAAAATCCCAATTAATTTTACAGACATATTTAAGTCAATTATAGACGT
AATATTCAAATTTGTGGGTAGAGTTAAGATATCCAAGAAGTTTAGCTATA
GTTTTAGAGCGTTTATTTGATTTAAGAGTTTTATATTTTTATGGTGCATT
TCAGCCATAAAATATATCTACTTGGAATTTGAGAACACCCTAAGGGTTAA
TAAGAATAGTTTGGTGACGTAAATTAGCAATATATCTTATAAGAATACTA
ATGTAATCCATGTTCAATTTTGAGAAAAAATATTCTAACTTGCTTGTGTG
TTTACAGGCTATCCTTGAATTACAGTAATTTCCATAAAGTTATTCCTTGG
AGGAGGATATATATATTTAATAATTAATGACGACTCTATAAACACAAACA
AATGATTCATTTATAAACAAATTGTATCTCTTATCTTTAAAAAAAAAATC
TTTATTATCTCCATAATGAAGTTGATACAACTTTTTTGTTTTACTACTCC
TCCTAAAAGGTCATTAAAGAATGTAGTTTGAAAGTAGAGTAAAATTTAGT
ACAGAAAAAATTAATAACATTTTCTAATTGTAATATTATGTTCTAATTTT
TTCCCTACTAATACATATTTTTCAAAGAATCGGCACACTACGTGGAAAAC
CTGTTTTAATTACTTTTGTAACCTGTTGTGACTTAATCAAAATGGGTTTT
TTATCTGTACCTAATAGTCAATAGATACACCTTTGCATGCCTTTGAATAG
CTAGATGATCATGACATGACACTGTTGTACTATTATATACATGCCACGTG
ATATAAGAGAAAACTTGAACAATACCTATTGTCTGATTTTAGTTGTATTA
TCACTAACACACAAATATCTATATATGTATATAAATTAGTACTTTAATTA
CGTATATGCAGATTCATTTATAAAATTCGCGTATCAATTGTATCTCGTAC
ATAACAAAATATTATACCCCATGCATTTTATGTCAAGCGTTTTCACTGAC
GTACTTATTGAAGGAGGCACCATCTTGGGTGCTCAAAGTTGATATTTTAC
TACATAAAATGTACAAATTACCAATAAATATTGATGAAACTCAATTGGAT
GGCTTTACGAATTAAAAAAAAGAGGACTTGAAATCTGCATTGAGTACTAC
TTGATGTCAATGATAAAGAGTGAAATTTGTATATAATCAAATACTGGAAA
TCCAAATGAAATGTCTCAAATTTGCACAATATTTTTTTTAAATCAATTAG
AAACAAAAAAGTAGAATAATTACGAGAAAAATATATTATTCTTTCCATTG
CAATAGTTCCGCAATATAGAAATAAGATTGCTTAACGATGTAATGATATA
TTTTGAACATATTAGGGTTATATTTATAATAAAAAAAGGCAATAGAGGAA
TAGATTTTTGAAATAAGCTTTAGCCCTTTTATTTGTTGGTCTCATTTTGA
CATCCAAAAGTATAAGTTCACTATGTTCCTAAGTATTAATTAAAAAACTT
AAGAAACTTATTATAAAACTAGGTTGTTTAGCTCCCAAATTGACCAAAAT
CAACCATCCTGACGCTACATGAAAACCCTTTATTTAAATATATCCCTCAG
TTTAATAACTATAAATTTATCTCAATTTGTTTCTTCATTAGGTACCTGGA
AATGGCTCTACAGCTTCATATATTGATCAAGCTCATAAAGAAAAGGCGTT
ACAATCAATGCAACAAATGTCTTCTGCACAAATTGTATCCGCAACAGCGA
TGCAGGCCAAATCTTTAGCAATCCCTCCCGGAGTTGGTGTAAGTAGTTAT
CTTTTCTACTTTATAAGCAATTAGTTTCCTTCTTTCTACAATATTTAACA
CTAGCACGGAGTTAGACAGACAAAATTTGATTTAATAATTTAGTATATAG
CTCTCTAAGAAATCCTCAGTGTTACTCTTCGTTTTTCATGAGCAGACGGA
CAAGTAGTTACGTCAAAATTAATTTGACTGGATGAGCCAGGGAGCTATAC
TTTATTATCTAGAGCCCTACCTGGCCGAGCTTTGGTACCACACACTTGTT
GCTAAACCTCAATTAAAGGGTTTTCATTCTTTATTATTTTATATAATGTA
GTTCTTTTCTTTTTTATATGAGTTTTGCTACGCACGCTCCTTATTAAAAA
TGAGTCCTCAACTTCTATTTCATAGTATAGAGTAGAGTTGTATAAAATAT
GAGTTGACGAGATTTCAATCACTTTTACATACAACTTTATACATAAATAC
AAATAGCTACCCTTGCATACATACTTTTCTTTTTTAATATGAAGCGCACG
CTCGATGCTACATCCAAAACRCCTGTCAAATTTTATCAATATAACTACTT
TGTTATTTCTTATATCAAAAATGGCTGTACAGCGTCTTTATAATATAGAT
GAAGATAGAATAGACTCTGGTCAATTGTTTTACAAACTGAATATAGTTAA
ACAAATAACTCCTCACTTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTATGATTGATTTAATTTCTTGCAGATTCATCAT
ACACCTGTAAGCTATGCAGGGAGCTTCTGGCAACCGGGACTACATTCTGG
ATCAACGCAAGAGTAAGTATTACTTATTTTTAGCAAATGAATTATTGCTT
CAATTTGGTCTAAAATAAATACATATATATATATATATATATTTAATTTC
AGTATAAAACCTTTTGCGAATTCTTCGTTTGGTATAACGGACAAACCGGG
TGCTCCCTCTGGCATCATTTCCGCACAGACCTCATCGACTCCTCCTTGGC
AAGGAAGATCTATCGGTACACAAAAATTAAGMCTCTTAGAGTTTACGTCG
TACGTAGAATCCCAAGCCAATGAACCAGAGACTTATCATAAACATCATTT
CGTCCATATCGGCAGKGTTGTGKCTAGTTCTGACCCYGTACTAGAGGTAT
AATAACGCTCATCATTACTTGCTTTAGTGTTATCTTTTACATTTGTTTTG
AATATCGCTGTGAAAGCCATGGATGATGATTAATGTTCTCAATATGTTGC
CTTATTTAAAAAAAGAAATTGGGGTGGTTAAAAAAATAAATCAAGAACTT
ATAAAACAAGTTCTTTTCATTTGATCTGATTAAACAAAAAAAAAAAAAAA
TGTATTGAGTGTAAGGGAGGGACAGAAAGAAAAAACTTCATTCATGTGTG
TGTAGTATTTGATCTAGCTTTCTTTTTAAAGATGAATAATAGTTCATAAT
ATGTTGATGATGATATGGTTGTAGAAGAAATAGTTGGATTTCCCCTCTTA
TTGATATTTTCCCTAGTAATAAATGTCTCTTTCTATTGTGTGCGTTTATA
TTTATATGCGTGTGTTATTATTCGTCCATCCCCCTAGTTTCACATTATTC
TTTATTTTCAAATATATTTACAGCCAATCGATGTCCGGCAAATTCAGGAT
AAATTTCCAGAGAAAAAAGGAGGACTTAAAGAATTATATGAAAAGGGTCC
CACGGATGCCTTTTTCCTAGTTAAATTTTGGGCTGATCTCAATACAAACA
TATCAGAAGAGGCCGGAGCTTTTTACGGTGTTACTACAACGTATGTTATT
ATCTCTTTCATTTGTTGTAATCTTTTAAGTGCTCATTTGCTTTTAAAGGT
ATGAAAGTAACGACAATATGACCATACAGTGCTCAACCAAAGTTTGTAGT
TTTGGCAAACAAGTAGTCGAAAAATTGGAGACAGAAGTAGGTAAATTCGA
AAATGGAAGATTTTTGTATAAGATACATCGATCGCCCATGTGCGAATACA
TGATCAACTTTATACACAAGCTTAAACACCTTCCTGAAAAATATATGATG
AATAGTGTGCTGGAAAATTTTACAATTTTGCAGGTAAACGATTTATACAA
TTGTATGTATAACTATTATTCATATGGGACTCTTATATTTCAGGTGATAA
CCAATCGAGATACTCAAGAAACCTTACTTTGTGTAGCTTACGTATTTGAA
GTATCCACATCCGACCACGGAGCACAACATCATATATATCGTCTAGTTAA
AGATTGA

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