EMLSAT00000012371, EMLSAT00000012371-708218 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000012371
Unique NameEMLSAT00000012371-708218
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s905supercontigLSalAtl2s905:241347..244476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000012371 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000012371EMLSAG00000012371-695137Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000055511EMLSAE00000055511-764439Lepeophtheirus salmonisexon
EMLSAE00000055512EMLSAE00000055512-764440Lepeophtheirus salmonisexon
EMLSAE00000055513EMLSAE00000055513-764441Lepeophtheirus salmonisexon
EMLSAE00000055514EMLSAE00000055514-764442Lepeophtheirus salmonisexon
EMLSAE00000055515EMLSAE00000055515-764443Lepeophtheirus salmonisexon
EMLSAE00000055516EMLSAE00000055516-764444Lepeophtheirus salmonisexon
EMLSAE00000055517EMLSAE00000055517-764445Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto775131auto775131Lepeophtheirus salmonispolypeptide
EMLSAP00000012371EMLSAP00000012371Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000012371

>EMLSAP00000012371 ID=EMLSAP00000012371|Name=EMLSAP00000012371|organism=Lepeophtheirus salmonis|type=polypeptide|length=490bp
MVWGYYCIIISITISVSFGQFVIPTDDEEPEREESCHLPTGKPALCVPVE
RCRQVQNLIKGLNSPLETDIALLIRDGLFCRNRHNPDETNLCCPIDGIDP
PPKTRPFVRDLGECVLSNGLGSSCVTFSRCSPFLALLKNLNGKGPLHPDI
PNLIQNAWKCGRDENRRPQVCCPDPAIFPLNPPDDKKLTTPTPITSTKTT
EEEITTTPASSTTXNVVTTPETPESTTLSPREEDLERFESHPNRRILAPS
DMCGHPAAPSRIVGGKDASLGQFPWLVNIGYRFRSKPEVLYRCGGALIGA
QYVLTAAHCVSRLPRGFSPSTIRIGEFDLSKDDDCFEESGIKICSEPVQN
FDLEKIIPHPLYGKTPHNLHDIALVKLERPVIENDYVTTICLPFSHDEEE
NYETSDLALRSLFTKRSSSVTPGNQICAGGEKNKDSCSGDSGSALMQEFA
FQYTAVGVVSFGPKLCGTEGVPGVYTRVRNYLDWILDNLE
back to top

mRNA from alignment at LSalAtl2s905:241347..244476+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000012371-708218 ID=EMLSAT00000012371-708218|Name=EMLSAT00000012371|organism=Lepeophtheirus salmonis|type=mRNA|length=3130bp|location=Sequence derived from alignment at LSalAtl2s905:241347..244476+ (Lepeophtheirus salmonis)
CGTTGAAGGAAATAATATATTATAATAGTCTAGTCGTAGTTAATATAGTA
TTTCTAATTGAATGGGAATCCCTTGTTGTAATTGGTGTGTACCCATTTAT
TTTTTACTATTTTGAAAGAAAAAGATGTCATCCAGTGAATAAAACAGAAT
ATACGACGAATCTTTACATTTATTATTTTTTAAATAACTTAGAGTTTATT
TAAGCCCCTATCGATAACTCAAAGGMTCAAAGAAATGGTCTGGGGATATT
ACTGCATAATTATATCTATCACCATCTCAGTTTCATTCGGACAATTTGTA
ATTCCAACCGATGATGAAGAACCTGAGCGTGAAGAGTCTTGTCATTTGCC
CACAGGAAAACCTGCATTGTGTGTTCCAGTTGAACGATGTCGACAGGTTC
AAAATTTGATCAAAGGTCTCAATTCCCCACTTGAAACGGATATCGCACTT
CTTATTCGAGATGGACTATTTTGCCGCAATCGACATAATCCTGATGAAAC
AAATTTGTGTTGTCCCATAGATGGAATTGATCCCCCTCCAAAGACTAGGC
CATTTGTAAGAGATCTTGGTAACATATAATATGACTTAGGTGTTCAATAG
TATTTTTAATTGTTGTCCGTTTTTAGGCGAATGTGTTTTATCAAATGGAT
TAGGCTCATCCTGTGTCACATTTAGTCGCTGTTCACCATTTTTAGCCCTT
TTGAAAAATTTGAATGGAAAAGGACCCTTACATCCGGATATTCCTAATCT
CATACAAAATGCCTGGAAATGTGGCAGAGATGAAAATAGACGCCCTCAAG
TGTGTTGTCCAGATCCCGCTATTTTTCCCTTGAATCCCCCAGATGATAAA
AAGCTGACAACTCCCACACCTATAACGTCAACRAAGACGACAGAAGAGGA
AATTACRACCACTCCGGCATCAAGTACGACTRGGAATGTAGTTACTACMC
CCGAGACTCCAGAAAGTACGACATTATCTCCTCGTGAAGAGGACTTAGAG
AGGTGATCGGACATATATTCTTTTAAATGATAGTGTATTTATATCTCTAT
TTTAAAGGTTCGAAAGTCATCCTAATCGTAGAATACTTGCTCCATCGGAT
ATGTGCGGACACCCTGCTGCTCCTTCAAGAATCGTTGGTGGCAAAGATGC
GTCTCTAGGACAGTTCCCATGGTTAGTTAATATTGGCTATCGATTTAGAT
CTAAACCAGAAGTATTATATAGATGTGGAGGAGCATTAATTGGCGCCCAA
TATGTACTAACAGCCGCACATTGCGTATCAAGGCTTCCTAGAGGATTCAG
TCCGTAATTATCCTAGAGTTATAGTGTATTCGTTTAAAAAAATAATCTAA
TTTAAAAAAAAAATGAAGGTCAACTATTCGAATCGGTGAATTTGATTTAT
CTAAGGATGATGATTGCTTTGAAGAGTCTGGAATCAAGATTTGTTCTGAG
CCAGTACAAAATTTTGATTTGGAAAAAATCATTCCTCATCCACTATATGG
AAAAACTCCACATAATCTCCACGACATTGCTTTAGTTAAACTAGAAAGAC
CTGTCATCGAAAATGGTAAGTCATTTTGACCTTTAGTACATGATGAGTAA
AAATACTCATCATGTAAAAGTTTAATACCCTCCATTAAAATTACTCAAAC
ACATGCGAATTAAAGATAAATAAATTAGGTCATAATTCATTTATTTTTGA
GTTAGCCTCTTATCATTTATTTATATTTATTGAAATTTGAGTGCATGGGT
GAAATCATATATCTTACTATTTACAGATTACGTGACAACCATTTGTCTAC
CGTTTAGCCATGACGAAGAGGAAAACTATGAGACATCTGATCTTGCTTTA
AGATCATTATTTACGGTTGCAGGCTGGGGKGCTACTACCAACAGAGGKAA
TATTACATTTAAAAGTATATAAAATATTTTATCATTGATAGGTTGGTCGA
GGTTTTGTAGAAAGATTGTTCCGACTTATTTGACATAATCTAAGTTAGCA
CAAAAGTAATCTTGATAAAAAATCAAGAAAAATAAAACGTTCTCTAATTA
TTTTTTTAAAATAACATACACAGGATTCTATTTTTGAGGGGGCTTGGTTT
TTGAAATTTTGAATAAAATTTTTTTTGAAATTTTTTCAAAAATCCATAGA
TATTCACAAAAAAATCAATTTCAAAAATCAATATAAATTCACAAAAAAAT
CAATTTCAAAAATCAATATATATTCACAAAAAATTAATTTCAAAAAATTA
AATTTTTAATTGTTTGGATAAAAATTTTAAAAATCCACAACTATTTACAA
AAATTAAAAAACCAAATATTAGGAAAAAAAATCAGAAATCCATTGCTTTT
TACCAAAAATTAAATTTTTTTGAAAAAAAAATCAAATATTAAATTTTATG
CTCTGTTGGATAATTTGCCGAATTACAAAAAAATCATTTTTTGTGGATCA
GCCCATCCCCTGCAGACGCCCCTGTATATAGACAGCCCAATATTTTAGAG
ACATATTTTGGTCAATTATTGCTTCGTATTCAAATTTCTGGGATGAATTG
ATATACCTTATAATATTAGATATTGTTAAGAATTTTCATTTGATTTATTG
AACTTAAGTTGGCACCAATATGTCTTTTTGAATAAAATCTATCAATGTAT
AATTATTTCATTGTAACAATAAATTTTAGCTACTTTAAGGTGAATTTCCA
CTTAATTTATTAATTAAAATAAATTGTTGGTAGAAATTTATGATAATATG
CAATAGATTTTTAGAAAAATCATTCTAGCTTCCTTTTATGTCGACGGTTT
ACATATTGACATATTGTTTTAGGAACTCATCCTGCCGATATACTTCAATA
CTTGGATGTATCCATATTTAATTCAACTCAATGTTCCGACGTGTTTAAGA
AACGATCTAGTTCTGTAACTCCTGGAAATCAAATATGTGCTGGAGGGGAA
AAGAACAAAGATTCCTGCTCTGGAGATTCAGGATCTGCACTTATGCAAGA
ATTTGCGTTTCAGTATACAGCTGTTGGTGTAGTCAGTTTTGGTCCAAAAC
TCTGTGGAACAGAGGGTGTTCCTGGTGTGTACACCAGAGTACGAAATTAT
TTGGATTGGATTTTAGATAATCTTGAATAA
back to top
Add to Basket