EMLSAT00000012481, EMLSAT00000012481-708328 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000012481
Unique NameEMLSAT00000012481-708328
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s91supercontigLSalAtl2s91:267608..270916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000012481 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000012481EMLSAG00000012481-695247Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000056051EMLSAE00000056051-764979Lepeophtheirus salmonisexon
EMLSAE00000056052EMLSAE00000056052-764980Lepeophtheirus salmonisexon
EMLSAE00000056053EMLSAE00000056053-764981Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto775601auto775601Lepeophtheirus salmonispolypeptide
EMLSAP00000012481EMLSAP00000012481Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000012481

>EMLSAP00000012481 ID=EMLSAP00000012481|Name=EMLSAP00000012481|organism=Lepeophtheirus salmonis|type=polypeptide|length=464bp
MKVNSCLSWINILKINDKVKKRFGTPYAIQVSRETLYCDLQKLLLKEMSP
ILHSNVLVGEQNIPIFKMKVLMDDNNEDESSSKSPSSSSSSYLNPEAELP
MCTDIMERATKLGSVIKLVLEWDALAKSQIINDDSAPVEIHSTVAAAEEE
SYPKEASSVSLQECFSLYTSEEKLGQGDAWFCPECDRKREVVKKMGLWSV
PDVLVIHLKRFRQCSLSTDKLLTLIDFPLDGFDMTPNVSRSSSTNSSTCS
TILSSQVMVESSINKVIANAFNPWRHPKRYLARSTVLTQEDNYMYDLYAV
CNHHGSDLQGGHYTATCRNPTDGIWYSFDDVRTKSLSKNEVVTKDAYILF
YQRRTTSSVPPSSYNNNTTSSGGSEHWVYRMPDFNFYKNKSSTLKPTSST
TNFIRNSEKYATLPAKKISEVAAYSTKINNNSNNMDNETTPTLAIPEEDE
DDDVSRPIDKNDVD
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mRNA from alignment at LSalAtl2s91:267608..270916+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000012481-708328 ID=EMLSAT00000012481-708328|Name=EMLSAT00000012481|organism=Lepeophtheirus salmonis|type=mRNA|length=3309bp|location=Sequence derived from alignment at LSalAtl2s91:267608..270916+ (Lepeophtheirus salmonis)
TAAATAGAAGGAATTTATGAAGAAATACATAGTTATAGAATCATACATAT
CGGTTTGGAGCTGAGATTTCATTACTTCTGTAAATTTGAGAATATTTAAG
GAGCTAAAAAGGGAGTGAGTGGGCAACAGCTCGTCATGCCTGCGATTATT
AAATGAACATGTAAAGAGAGAGAAAGAGAGAGAATTGAATATGATCTGCA
GCTAGCTAGAGCTGGAAAGAGGAAGCTGGAAAGAAGCAGAAGAATCAAGA
AGAGAAGGAAAAAGGGGAGGAGTCGTGGATGGATATTATATGAAGGAAGG
AAGGAGCTTGAATCGAATAAAAATAAGTGAAGTCTTGGGGATGTCTGCAT
TGGCACGATTCGGGGAGCGATCCAAGAGTTCCGTGCTCAACCTTTTGTCC
AAATTGGGGAAGAACGGAACTCCAGGATCCGAGGAAAACAATGATTCTTC
CTCTTTTCTCATCAAAGAGTGGAAAAGACGTTTCGAGAGTCGCGTTCCGG
GTGTTATGGGAATACGGAATCATGGGAACACATGCTTCATCAATGCTGTT
CTACAATGCTTGAGCTACACAGAAGCCCTCGCCGAATATCTCGTACTCGA
CAATTATAAACATGACCTCAAAAGGAAAAAAAAGAAGAAAAAGGTAATGA
TGCGAAGCAATCGCGGATCACGAGCTCTACTCGTCCAACACTCATTCCCC
ACTAAGAACCCTATTCTTTATTTCTTACAGTTTTCCAATAGAAGAAAAAA
TGTCGGGGACGGAGAAATCACTGAACAGCTCGCCACAGTCCTCAAGTCGC
TTTGGTCCTTGGAGTACACGCCAGAAATATCTGTCAAATTCAAGGCCCTC
ATTGAAAAATATGGTGGACCTCAATATAAAGGCAACTCACAACAAGATGC
TCAAGAATTCCTTCTCTGGCTTCTAGACCGTGTACATGAGGATCTGAATT
GCTCATCCAACAAGTTAAAGCGGAAAACACCGACTTTCATCTCTGAGGAA
GAATTTCTTGCTCATGAGGCACTCTATAATTACGCTCGTTCCAACTCCAG
CTTTGTTATGGATGTCTTTCAAGCTCAATTTCGATCTAGTCTCACATGTA
GGACATGCGATCGTGTTTCCAATACATTTGATCCATTTCTATGCGTCTCC
CTTCCAATACCTCCTACTAAAAAGTATGTTCCCATATATGTGTACGTCCT
TTATTTAGACCAAACGCCAAGGCACGTTAAAATAGGGCTCATTGTGGAAG
AAAATGAGACAATAGGTGGTTTAAAAAAGTGTTTGTCCAAAGATACGGGA
ATAGACGAAGACACTCTTTTCCTAATAGAGTTAAAAGAAACTGCCTTTTC
TCCTTACTTGAAAAATGACGTCTTTGTTCGTGATTTAGACTCTGAGGCTG
ATTTATATTGTGTTGAAATCCCTCGTTCACCCCAGCTCTACTGAAGAAGA
TGAAGGTGAATTCATGTTTATCATGGATCAACATCCTAAAAATAAATGAT
AAAGTAAAGAAAAGATTTGGTACACCCTATGCAATTCAAGTGTCCCGAGA
GACGCTCTATTGCGATCTTCAAAAACTCTTACTCAAGGAGATGAGTCCTA
TCCTTCACAGTAATGTCCTTGTGGGAGAACAAAACATTCCTATTTTCAAG
ATGAAGGTCCTAATGGACGATAATAACGAAGATGAGAGTAGTAGTAAATC
TCCGTCATCATCGTCGTCATCATACTTGAATCCAGAGGCTGAGCTACCCA
TGTGTACGGATATCATGGAGAGAGCTACTAAGCTGGGTTCTGTTATCAAA
CTAGTCTTAGAGTGGGACGCGCTCGCCAAATCTCAAATTATAAATGACGA
TTCAGCCCCTGTAGAAATCCACTCGACCGTTGCTGCAGCTGAAGAAGAGT
CTTATCCCAAAGAGGCTTCCTCAGTGAGTCTTCAAGAATGTTTTTCCCTA
TATACATCTGAAGAAAAACTCGGACAGGGTGATGCCTGGTTTTGTCCAGA
ATGTGATCGTAAAAGAGAAGTAGTCAAAAAAATGGGGCTTTGGTCCGTTC
CAGATGTACTTGTCATACATCTCAAACGCTTCCGTCAATGTTCACTAAGC
ACAGACAAGTTGTTGACTCTGATCGATTTTCCGTTAGATGGATTCGATAT
GACACCAAACGTGAGTCGTTCATCATCAACGAATTCATCTACATGTAGTA
CAATCCTAAGCAGTCAAGTCATGGTAGAGTCTAGTATTAATAAAGTGATT
GCAAACGCCTTCAACCCCTGGCGACATCCTAAGCGATATTTAGCCCGCTC
AACTGTCCTGACTCAAGAAGACAATTACATGTACGACTTATACGCTGTTT
GTAATCATCACGGTAGTGATCTTCAGGGTGGACACTATACTGCAACTTGC
AGAAACCCCACAGACGGAATATGGTACAGTTTCGATGATGTACGCACAAA
GTCTTTATCCAAAAATGAGGTTGTCACGAAGGATGCTTATATTTTATTTT
ATCAAAGACGGACTACTTCTTCCGTGCCACCCTCTTCATATAATAACAAT
ACAACGTCTTCAGGAGGCTCTGAGCATTGGGTATATCGAATGCCAGACTT
TAATTTCTATAAAAATAAATCATCCACACTCAAGCCAACTTCATCTACGA
CTAACTTTATTCGAAATTCAGAAAAATACGCTACCCTTCCCGCTAAAAAA
ATCTCTGAAGTTGCTGCTTATAGTACGAAAATTAATAATAATAGTAATAA
TATGGACAATGAAACAACTCCGACTCTTGCTATTCCGGAGGAAGATGAGG
ACGATGATGTGTCAAGGCCGATAGATAAAAATGACGTTGATTGAATATTG
TGAACATTATTTAACTTCTTATTAAAAAGTATTCNACCTCATACAACTGA
AAATGAAGAATGGATTCATTCTTCAAAAAGTTCATTATGAGTGAAAATAA
TACATTCCTAGTTAAACTATCACTATTATTTATTATTATTATTATTACTG
TGTCCATCAATTTGTCCAACTTTCAGAACTGCCTTATTTTTCAACAAGTT
ACTTACTTCTTTTACTAAAACACACACTCTTTTTCAACAATCTTTTTTAT
ACTTAACTCTATGAACTTTGTTTTTTTTACTATTAGTACTACTGATCAGA
TTTTTTGCTACTTATAATCAAGCTAAAAATGATAAAATATTGTTATTGAA
CGGAAATATAATGATTCACATATCATCAAACTTTTTGTTCCTTTCTCTCT
TTATTAAGTAATTTGTATGTTATGATTTAATCTTCTTAAAAGCACTGCCA
TTATTTGAG
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