EMLSAT00000012572, EMLSAT00000012572-708419 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000012572
Unique NameEMLSAT00000012572-708419
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s933supercontigLSalAtl2s933:112283..115612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000012572 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000012572EMLSAG00000012572-695338Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000056469EMLSAE00000056469-765397Lepeophtheirus salmonisexon
EMLSAE00000056470EMLSAE00000056470-765398Lepeophtheirus salmonisexon
EMLSAE00000056471EMLSAE00000056471-765399Lepeophtheirus salmonisexon
EMLSAE00000056472EMLSAE00000056472-765400Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto772457auto772457Lepeophtheirus salmonispolypeptide
EMLSAP00000012572EMLSAP00000012572Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000012572

>EMLSAP00000012572 ID=EMLSAP00000012572|Name=EMLSAP00000012572|organism=Lepeophtheirus salmonis|type=polypeptide|length=413bp
MSHLIRGVLSRSYSSGVRIPPSMMGTLMDVGSRRIFNQESDMFRESVRRF
MKEKLVPAYDTGFGGTGIPTKEIWKEFGDMGLLGVGISSEKGGFDGSFTD
ASIIHEEQIYCNCTAPAVLIHSGIVMPYIANYGTKEQIERYMPPMVAGEL
IGALGMTEPGAGSDLQGIRTSAKADGDDFILNGSKVFITNGIVADLCIVV
AXXXPNARSKAHGLSLFLVPSDAPGYSKGCNLKKIGCHNQDTAELFFEDV
RLPKSALLGKFNGGFYHLMEELPQERLGIAVIAAAHAEWMYEETKDYINQ
RQAFGKSLAHLPTVRFKMAELKTKIAVMRAFVDECLIMHEHKKCNQEMAS
MAKYAATDLENEVATECVQLHGGWGXMYETPIARAFIDSRVQPIYGGSNE
IMKELISRSVIKR
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mRNA from alignment at LSalAtl2s933:112283..115612+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000012572-708419 ID=EMLSAT00000012572-708419|Name=EMLSAT00000012572|organism=Lepeophtheirus salmonis|type=mRNA|length=3330bp|location=Sequence derived from alignment at LSalAtl2s933:112283..115612+ (Lepeophtheirus salmonis)
TTGTGTGGAAGATGACGTCATATAATAAAAATTGAGACATGCAAGCCAGT
TACTTAGGAAAATAAATGTATAATTAAAGCAAGTTTACCTAAGTCAAAGG
CAAAGTGAGAGACTGGACTAAGAGTGAGGTGTATCTTGAGCATATGAAGC
GACTCCTAGTAAGTTATAGCCTATAGGTTATCTCAAGAAGAGTGACTTAG
TTGGAAAGTAGTTGAGTAGTTCTCTTTTCATTGATTCCATCAGCAATCAA
TTCACTGATTTTGGATTCACTCCTTTGATCCAGAGTTCTGTGTTTTCTCT
GAGCTGCTTTTGAACTTTCAACTCATCAATGTCCCATCTGATCCGAGGAG
TTTTGAGTCGATCCTACTCGTCCGGAGTGCGTATTCCTCCCTCAATGATG
GGCACTCTCATGGACGTAGGATCCAGAAGGATTTTTAATCAAGAGTCCGA
CATGTTTCGGGAATCCGTTCGACGATTTATGAAGGAGAAATTAGTTCCAG
CTTATGATACTGGATTTGGAGGAACTGGAATCCCTACCAAAGAAATTTGG
AAAGAATTTGGCGACATGGGACTTTTAGGTGTTGGGATCAGCAGTGAAAA
AGGGGGTTTTGACGGTAGTTTTACGGATGCTTCCATCATTCACGAGGAAC
AAATCTACTGTAATTGCACTGCACCTGCTGTTTTAATTCATTCTGGAATT
GTAATGCCTTACATTGCCAACTATGGCACAAAGGAGCAAATTGAAAGGTA
CATGCCTCCCATGGTTGCCGGAGAATTAATAGGTCTATACATTTACCTAA
TTATTTCATATTCATTGTCGATAATAACCTGTCTATGATTCACTAGGTGC
ACTTGGCATGACAGAGCCAGGAGCTGGATCTGATCTACAAGGTATAAGAA
CCTCTGCAAAAGCAGACGGAGATGATTTCATCCTTAATGGAAGCAAAGTT
TTTATTACGAATGGAATTGTTGCTGATCTTTGCATCGTTGTGGCTGMGYC
GGYTCCTAATGCCCGCTCTAAGGCTCATGGATTATCTCTATTCCTCGTTC
CATCAGATGCTCCTGGATACAGCAAAGGCTGCAACTTAAAGAAAATTGGT
TGTCATAATCAGGATACGGCCGAATTATTTTTCGAGGATGTACGTCTTCC
AAAGTCTGCTCTTTTGGGAAAATTCAATGGAGGTTTTTATCATTTGATGG
AGGAATTGCCTCAAGAGAGACTTGGTATCGCTGTTATTGCTGCTGCTCAT
GCTGAATGGATGTATGAGGAAACAAAGGACTATATTAATCAAAGACAGGC
TTTCGGTAAGAGTCTCGCCCATCTCCCAACTGTAAGATTCAAGATGGCAG
AGCTCAAAACTAAGATTGCAGTCATGCGAGCTTTTGTTGATGAGTGTTTA
ATAATGCATGAGCACAAGAAATGCAATCAGGAAATGGCTTCCATGGCTAA
ATATGCTGCCACAGATTTGGAAAATGAGGTTGCTACCGAATGTGTTCAAT
TACACGGAGGTTGGGGGMATATGTACGAAACTCCAATTGCAAGAGCCTTT
ATCGACTCAAGAGTTCAACCCATCTACGGTGGATCCAATGAAATCATGAA
AGAATTAATATCCAGGAGTGTCATTAAAAGATAGACATTTTATTTGTTAT
ATTACTTACTTATATTTTAATATACCTCATTAGTGTTTCGCAAATAATTA
AACCATTATTATTATTTTTAAATATTTAAATACTCGTAATTTAAAATATA
TGTATATCCTAATTTCAGGATCATGGATGAGATAGAAAGATGTGTTTTTG
TAAAAAATGAAGTCCATGTGTATAAAATACCTCCACGTACATCGGCACGA
GGCTATCGTGCCGCAAATTGGAATTTAAACGTTCCAGAATGGACTGGTAG
AATAAGAGCGATGGTAAAGGGCAAGGATCTACAACTTTGTTTGGAAGATA
AAAACTCAGGAGAACTATTTGCAGCTTGTCCAGTGGAACAGTATCCTGGA
ACTTCAGTTGAAGCTGTGTTAGACTCTTCTCGATATTTTGTTTTGTGCAT
CCAGGGTGATGGACGAAAAGCCTTTATTGGCATTGGGTTTGCAGATAGAG
CTGATAGTTTTGATCTTAATGTCGTTCTTCATGATCATTTCAAGTGGATA
AAAAGACAAGAAAATGAATTAGAAAATCCATCAGGAGAAGAAGGGACTAA
CAGTGGCCCTGCTCTTGATCTTTCTCTAAAAGATGGAGAAACTTTTCGTA
TTAATATTCCAAAAAAAGATGGAATCTCTAGAAACCGATCCAAAGCAAGC
TCCCGTGGACTACTGCCTCCTCCTTCGTCTTCCGGTGATGCGCCCAGAAT
AGCTCCTCCACCTGGAGATACACCCATTCAATCTCCTACAGAGCCTTTTA
ATTCTGTGATATCTAATCCATTAATAGATATTCCGTCCTCTTCCATCAAT
GATGAGGAGGATGAGGATGATTGGGGAGAATTTAAAGGAGGAAATGCAAC
GGTGCAGTCGAGTGGGAACTGGGTCACTTTTTGATGTATGTAGATCATCC
CATCAACAATGACCATGAAAGAAACAATATTATATTCACTCAATAATATC
ATAGGTATGAAGTCCAGAAATTATTGAACCCAATATCAATATATATATAC
GCATTTTTAAAAAAAAGAAATTAATTATTATGTCATTCATTAGAAATTTA
AGCCCCATATGTTGTTATTATTTGTGTATACGTCAGAATTGTGGAATTAG
AGCTAAGTTTTATACTTACAATATTTTATACTTGTGCATTTAAAAAATAG
AGAAAAAAGTATTGAATTCTAAATATGATTGAGAGTTACTTTTCTGGACT
TCATATCTCATTTCATTACAAACGTTTAATTAGCCACATTTATATATTTT
TCTATATACCAGTACTACTTCTCATGGTGGGAGTAGAGTTGATCTTCCTG
AAGTAAGTACATATTTTGTTGCAACAAACCGAGTGAATAACAAACAAGCT
TTCTTTCTTTTTTGTGTATGTACTTTGCTAATACGAAATGATTTTGTTGT
ATATTTGATAATGATAGAGTGTTGATTTAACTATTTAAAAGTATATAAAA
GTGTATCTTAGAAATATAATAATAATAATGTTTATATATCATTCTAATAT
TTATAAGTTTTTTGGTTGTTTTTTTTTTGCAACAAAACACGATCGTAAAT
AATTTTTTCTCCATTCCTGAAGCACCGACATATTTACCACATTGCGTATA
ATATACTGAGTATATACGTGTATTGGATTTGATAAGAAATGGTTGTATAA
TTGTATAATGTTTCTATAATAAATGAGTCG
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