Show in GBrowse|https://licebase.org/fgb2/gbrowse/lsalmonis/?q=lcl|LsalIR323-Anna|LsalIR323 |
Associated RNAi Experiments
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s85 | supercontig | LSalAtl2s85:695162..697758 + |
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| race | 2015-04-07 .848711 |
Properties
| Property Name | Value |
|---|
| Indels | 0 |
| Unknowns | 1 |
| Matches | 866 |
| Mismatches | 0 |
| Identity | 100.0 |
| Coverage | 98.3 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA from alignment at LSalAtl2s85:695162..697758+ Legend: polypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >lcl|LsalIR323-Anna|LsalIR323.mrna1 ID=lcl|LsalIR323-Anna|LsalIR323.mrna1|Name=lcl|LsalIR323-Anna|LsalIR323|organism=Lepeophtheirus salmonis|type=mRNA|length=2597bp|location=Sequence derived from alignment at LSalAtl2s85:695162..697758+ (Lepeophtheirus salmonis)
ATGCTAAGCTTCATTGGATCACATCACTTTTTCATTCTGTTCCTCTTGGG
GATGATACAATTGAATAAAGTATTAAGCAGTGAGTATGATAACACAACTC
TAGCCCCAAAAAGATTTCTCAAAGTTGCTGCTGAGCACTGGTCACCTTTT
TTTGAAATAACTGAGGACTCTAATGGAAATTTGAGCTACTCTGGAATCAT
GTGGTCAGCTCTTAACTTCTTCGCCTCTGCTATGAACTTTGAATATGAAA
TCCTAAGACCGTCAGGTAATCGATTCAACTTTTGTTTCTCTTTCGTCTGA
CTAAAAGCAAAATTAATTCTTCTTTACGAAATAAAGACAAGATAAAACAA
TATTTTTTCTGTTGTTTGGTGAAACAAACCAAATATGACGAAGCAAACTG
TTCCGTCTTATTGTCTTGTACAGGTGTGAAAAAAGGTCACATAATATACG
TTTGATTTTAACTTACACTCTCTATTATAATATAACTTTTTTTGTACTTA
CATAAGATTAATATCTCTGCGCCCACAGCTATTTTCTAGGATATTCTCTA
GCGGTAGGMATGATTTCGTTAGATATTAATAAAAAAATACAGTTTTTAAT
TGAATGCATAGTTGCATTTATGCTTGATACAAATATTTGTATACCCATAA
CTTACCTTTTGGTAAAAATAGGGACAAAACGAAGATTGGAATAAATTTGA
CAACACTAAACGTGATGAAATGAAGTCGAGACGAAGACGTGCCAAAACAA
ATAGAAGACGAAAAAATATGTCGCAAAATTAAGACAAGAGGACATATGAA
GAAATTGAAACAGACAAAGACGTGACAGAACGATATAAGACAAAATATGG
AGAAACGAGATCAATAATCTATAGAAAAAGTCGATAACTTAATTATGCCG
TAATAATAGGAAAGAAAACAGTAATTCTTAGCTGAGTTTATTTTAATGAC
GTCATTGGAGTATATATATTTTTAATTTTATTATTATCAGGATACATATT
GGTTAAAAAAATATTTGTGTCTCATAAATATTTATATTCTTTTTAATATT
CTTGTAATTGGTCAGATGGAATAACAATGATAAATTACAAATGGACATTA
TAATATTACAATTCTCCATCTGACCTGATTATCAATAGTCACGTTTTTAC
TTTTGTTGTATCCGATAAATTACTCAAGTGCTTTTTTTAATGACTATTAT
TTTTCAATAAAAAAATTATTCTTTGGAGTGGGGCCTTAGAAAGTTGAAGA
GTCAGGGCATTAGGTGGGATGTCAATTTTTGTTTAATGACGTGGTGGCTC
AGCAGGGTTTGGTGTCCATTCCAATTTAGTTCATCATAATATGTTTCGGG
ATGTCATTATTGGCTTTTTTTGTAGTGAGCGTAGAAACCACACCTGAGAG
AATATCATATAAAATATGAGATACAACCTAGCTAATGATATTAAATAACT
GTAAATATAGTGCTCCTTGCAGGTTTCTGAATAAGAAGTGCCATAATTTT
TATTTTATTTTAACTTACGCTCACTTTAATTTAGCCAATATTCACATCCG
TAAGTAGCGTTTAAATGAGCGAGTTCACTCGTACAACTATAGCATCGTTA
AACTAAACAGCACTAATGAAGACAAAAACATTTTCAGATGGGCAATGGGG
CGTAGGGGATGAAAATGGAGAATGGAATGGAATGTTGGGTATGGTCAAAA
GAAATGAAGTTGACTTTGCCCTTGGACCATTTGGTGTCATTTATGAACGA
GAGCAGGCCTGTGWTTTTACAGTTCCTATTGTCATTGACTATTGGGCTGC
CGTAGTACCCATCCAACCCTATCGAAATAATTGGACCATTTTTAAACCAT
TTGGATTATCACTATGGCTCAGTCTTGCACTCACGACCCTGCTCTATACT
ACCATTTGTAAGTTAAGTATTTTTATTATTATCTTAAAAAAGGCTTACCC
ATAAGAAGCAACTACATTACTTCTTACATTTTAGTGATCATCAGTGATAT
TACTTTCTTTGGTCGTCGAATTGGACATAAACATGTTCCAAAAATTATAT
CCTTCACCTACAGAAATATTCTTGGCGAATCCTCGGAATGGGCACCAGAT
AAGTTTATCTATCAAAGAATCTTCTCAGCTGTATGGATGTTATCTCTCAT
TATCATTGCAAAGAGCTATTCAGGGACCCTTGCATCCCTTCTCGCTGTAC
CAAACATTCCGATTCCAATTAATTCCGTTCAAGTATGTCTGGTGAAAAAA
AGAGTACATTTGTTTTAATATAGCATGTTGGGATTCTGTAGGACTTGGTG
AATCAGGATGAATTGCCTTGGATCATTGAAAAAGGATCCATCCTGGATCA
ACTCGGTCAAATGGCCGCTCAGGACACAACTTTTTACAAATTATATGATG
GAGCAAAAGAAAGGGGTATTATTGGAGCTAATTGTGTTCAAAAAAGAAAG
GAAATCAGAAATGGACTTTTTGGATCTGTCTGTGAGCGAACCTCTATCGA
TAAATTGATATCTGATGACTTTTCAGGGACGGGAGAATGTAAATTATATG
TTGGAGAAATTAACTTATTTGCCACATCATTTGCTATGGCGTTCCAA back to top
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