Show in GBrowse|https://licebase.org/fgb2/gbrowse/lsalmonis/?q=lcl|LsalIR324-Anna|LsalIR324 |
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
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Gallery Image |
Title |
Gene or target symbol |
Sex/Stage |
Phenotype |
Date |
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RNA_AE F255 |
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both- preadult II male
- preadult I and II female
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-Missing-
-Missing- |
22.02.2016 - 10:01
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| LSalAtl2s101 | supercontig | LSalAtl2s101:520090..522661 + |
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| race | 2015-04-07 .848711 |
Properties
| Property Name | Value |
|---|
| Matches | 1870 |
| Mismatches | 1 |
| Identity | 99.9 |
| Coverage | 100.0 |
| Unknowns | 1 |
| Indels | 0 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA from alignment at LSalAtl2s101:520090..522661+ Legend: polypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >lcl|LsalIR324-Anna|LsalIR324.mrna1 ID=lcl|LsalIR324-Anna|LsalIR324.mrna1|Name=lcl|LsalIR324-Anna|LsalIR324|organism=Lepeophtheirus salmonis|type=mRNA|length=2572bp|location=Sequence derived from alignment at LSalAtl2s101:520090..522661+ (Lepeophtheirus salmonis)
ATGATGACACTCCATTTATTCCTCTTTATTTTATTTCTATGCTTAGGATT
TTCATTTGGAAGGGATTTTCTTACTCCAAATGGTTATAAACGTATATCCA
GCAACACAAATTTCCTTAATTTCATATTCAAGAAGTACAAATCTGAAAAA
GCGAAATGTGTAAATGTCATTACTGATCATCGTCATCATCAAGATGAATT
TGATTTTGAGTCTCTTCACTCACAAGGACTAGCCCTACAAGTAAGTGTTT
CCACTTTAGTTTTCGTATAGTTAAAGGGGCGTCCGCAGGGGCTGGGCTAC
AGGGGCTGCAGCCCTCCCCAAATTAAGGAAATTTTACTTTATAGTAGAAA
ATTTAATATTTGATTTTTTTTTCAAATTTTTTTATTTTTTGTGAATAACT
GTGGATTTTTGAAAAAAATTAAAAAAAAAATTAATTTTTTGTGAATAGCT
GTAGATTTATGAAACTTTTTTCTAAAAATTTAATATTTGAAATTTTTTTT
TGTAAGTAACCGTGGAATTTTTGAATTTTTTTTGTCAAAATAAAAATTTG
AAATTTTTTTGACAAAAATATTGAATTTTTCACAAAAAAACAAAAAATAA
TTCCAAAAACCAAGCTCCCCCTCGGCCTCCAAAAACATATATATAATCTT
GCAGATGCTCCAGACTTACTTAAATGCTTTTTTCTTTAGGTCTTTGCTCT
CCATGATGTTGAAAAAGGAGATATGAGGAAAGCTTGCTTGTTTTGTCATT
TCTATATCATTTCTGGGAAATCAAAAGGTCTGGTGAGGGATTTCATTCAA
GAATTCCGTCAGGAAATGAGGCTGAACACGGGAAAGTTTACAATCATTAC
TTCATCTGAGGATTCTTTTAGCTTATTATATGACTCTGCTTTACAACACA
CACCTAATGTCCTTATTATTGAAATAAAGAGTGGAGTCCTTGGGAGGGAA
GGTAAATATCCCGTTTATTTGCCATTGATCGAAAAAGATCCAAAAGCCTA
CGAGAAGGATTTTTGGAATGGATCACAGCTTGCAATAAATGGGTTCAATA
TTTTCAAGGATGTCGTTCATGACATGAGGGGACGGATTTTAAACATTGTT
GCCTTTCATTTCCCTCCATATCTTCTTTTTAATACCTTTTCGAATGGAAC
TGTCTACCATACAGGATATGAAGTAAGGAGACATCATTTTATAACTATGT
AGTTACAAGTTAGCAATATCATTTTGTTTTTTTCAGTACAATTTAATAAA
ATTGATAGCAAAGTCTATTAACTTTGAAATTGGAAAGATCTCCCTTCCTG
ACGATAATAAATTCTGGGGAAGTGTCAAGTTTGATGAAAATGGAACCGCA
ATACCTACTGGGATTATAGGCAATCTCTATGAATATAAAGCAGATATTGG
AATTGCAAATATATACGTTAGTTTGGAGAGGTATGAAGTGGTCGCTTTCA
GTGTTCCCTATCGTTTTGATTACGGGATATTTGTTGTGAGTAGTACTTCA
AATTAGTATTTTATCAGTTGTATCATTATTCACATTTGTTCATCAGACAC
GAAAGCCTGATTCTTTGCCTCAATGGCAAGCCATTATATTCCCTTTCGAT
AAACAACTCTGGTTGGCTCTAGTCATTACTCTCATCATTTGTATAATCTT
TGTTAATCTCTACGCGTTTCGCCATAAGGAAGTATTTAAAAGGCTCTACG
ACGGTACGTTTGATCTAATCCACATCGTTTTGGATCAATCAACCTCTTTA
ACCAATTCCTACATGTAAGTTTTGCTTTATTTTGACTTCTTATCATCTAT
AATTAATCAATGTGCATCTTTCTTTATAACAAAGGACTCAAACGTTTAAA
GTATTTCTTGGAATCTACATAATCAACATGTTCATAATCACATTGAGCTA
TAAGGGAAGTTTGATATCCGTTCTGACTGTCCCTCATGTTCCTCCTCCCA
TTGACACAGTGAAGGATCTTTTAGATAAAAGTACAGTTCCGATGGGAGGA
ATCGGACTTTCTCTAATTAACCATGGACGGAATAGTCCAAATCAAAACGT
TCGAAAATTAATTGGTGACGACTACATCAAATTCGACAATGCAAAAGATG
CATTCAAAGNGTGCTATGAAGGAAAAAATGACTTAATTTTCTCCATGCTC
AGTGCAAAATTTAATATTTTAACAGACTATACTAATGAGTATAGTAACAC
TGACGTACTTTATTAAATATATGATTCAATTTGTTTCATTTTAGATTTGG
AGAGACTCAACTTCACATTCTGAATCAAAAGTATAAGGGCTTCATGTCTA
GCTATGGATTCCCTATGGTTAATTTATATGGACGGGAAATAAATAGAAGG
ATTATACAGCTCTTTGAGGGTGGGATCATTGGTAAAATTCGGAGAGACAC
AATGGAGAAAGGAGTTAGGAATAGTTTATCTGTAGAGACAACAAAGAGTC
AACAACCATTGAATATTAATAACGTTCAAGGAGTATTTTTACTTTGGTCC
TTAATTATACTCATTTCCATTATTTCATTTATTGTGGAAAATGTACTAAA
AAATATCTTTAAATATAAATAA back to top
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