Show in GBrowse|https://licebase.org/fgb2/gbrowse/lsalmonis/?q=lcl|LsalIR339-Anna|LsalIR339 |
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
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Gallery Image |
Title |
Gene or target symbol |
Sex/Stage |
Phenotype |
Date |
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RNA_AE F255 |
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both- preadult II male
- preadult I and II female
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-Missing-
-Missing- |
22.02.2016 - 10:01
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| LSalAtl2s899 | supercontig | LSalAtl2s899:187010..191149 - |
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| race | 2015-04-07 .848711 |
Properties
| Property Name | Value |
|---|
| Unknowns | 1 |
| Mismatches | 0 |
| Identity | 100.0 |
| Coverage | 100.0 |
| Matches | 1154 |
| Indels | 0 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA from alignment at LSalAtl2s899:187010..191149- Legend: polypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >lcl|LsalIR339-Anna|LsalIR339.mrna1 ID=lcl|LsalIR339-Anna|LsalIR339.mrna1|Name=lcl|LsalIR339-Anna|LsalIR339|organism=Lepeophtheirus salmonis|type=mRNA|length=4140bp|location=Sequence derived from alignment at LSalAtl2s899:187010..191149- (Lepeophtheirus salmonis)
GTGGATCTTAAATTGACGACTCATTACAGAGTTGTTCCCTACATTGATGG
AAAATGGGGCAATATGGTCAATAAGACGACTTTAAAATTTAATGGTATGA
TTGGAATGGTTCAAAGAAAGGTTCGTTAAGTTTACCATAAATTTATTTTA
ACTTAAGAAAATCCAACTTTCCATGGCCTAGGAGGCTGACGTCGCCATTG
GTTGCATAACAATTACATATGAGAGGAACATGGTAGTGGATTTCACACTT
CCATATTTGATGGAGTCTATTGCTCTGACGACGTATACTACTCAATTAGT
TTTAGATATTATATGAAGGGGCGTCCACAGGGGGTAGGCTGAAAGAGCTG
TAGCCCCCACTCCAAATAAATAAATTTTTATTTTTTACCAGAAATTATTT
TGGTTAGGATAAAAAAAAATTACGCGAAAATAGGCGGTAAATTTTTTTTT
CAAAAAGTTTAATATTTGAAATCTAATTTTTGGAAAATTTTTGCGAACAG
CTGAGGATTTTTGAAATTTTGTGTAAATAGCTATGGATTTTATCAATTTT
TTGAGAACAGCTGTAGATTTTTTTGATTTTTTTTCTAAACAAAATCTAAA
AACCAAGCCCCCCTCCTCAAAAAATATATAATCCTGCGGACGCCACATTG
CTATATTTTAGAGAAAAAAACGGTCAAAACCCCTATATATTTATATTATT
GAATTAAGTTTTTTTTAATACATCTAATAAAAATGTGTCTATGTTGGTTT
GTTCAGGCATTAACAAATAATTTAATGAAGAGTAATATAGTTTTTTTATA
ACTCAATTCCTGAGTATATTGTATGTATGAGAATATACCTATAATATACT
ATAATCGAGTTAATGTTTGAAGGCTATTTAAAGCTTTGTATTCAATTTTA
AATAAAAATATGTGAATGCATTAGTTAAAGGCAACAATTTTACAGTAATT
TTTTGGAGGTTTTATATCTATATACAACATAATTTAATTTTTTTGAAAAT
TTTAATATATTTATTATTTAAATACATAAAGTTATATGGCTAATTTTTTA
GTATAGAAGAACAACCGTGTACAAAAAAAAAGTCAATGAGGTTAGTCAGA
TACATGTATGTACATACATACATCATATATCATTGATGAAAAGTATAAAA
TCAAAATATTTAAACACTTTTCCAAAATAAGGATTTTGCTTCATAGTGTA
CTGCAAGATTGAACAATCTAGAGCAGTGGTTCTTAACCTGTATTCGATCG
AACCCTAGAGCTTCGGTGGAGGTCAAAATAAACATAATTTTTGATGACAC
GCTCTACTTGACGAATTATGAAGGGTTCGGTGAATATTCATATGAAAATA
GTGGGTTTCTGTACCTCCAACAAGATTAAGAGCTAGTGATCTAGAGGGTA
TCATTCAAAACAAAAATTGAGATAGCAAATATTTAACCGTGATAAATATG
TTTTTGAGGGACACCCCACCCTTTTGGTGCTCAATAAGTTTTCCATATGA
AGTAAAAAAAAATAATTATGCATCATTTAAAAAAAAAAATGTGTATTATC
ATATAATGCTATTAAAAAATTATCAAAGGATTTTCCAAGTAGGTGCCCCA
AAAAGATATGTATCTATGTTGATTTCTATTACCAAGACGCAACTTTCGTC
AGGTTTAAATCTTTCCTATCTCAATTTTTATTTTTGGAGGATACCCTCTA
TAAGGAATATTTTCTCTTCCTCTAGTCAGTCAACCAATATTTCTATATTG
GTACATTATGCCTCCACCTATCAATAAAGGTTTTATCCATGAAAACAAGT
AATTGTGTCATCAATTGGACTTTATTCTGAAGAAGCTGGAGAAGCATTAA
ATTAAGATCTTAGAAATGCTAGACTTACTCACTCAAGAAAATCATCATGA
ATTCCCACCGTTATAGATTTGATACACCGTCTTTTGATAAGCAGCGATAC
ATAAATATCTGATCTTCGAAAATATAACTTTTAAGGAAATAAAAAAAAGT
TATTGGCAGATACTAAATCAATATTTATATTGATAGAGTAAAGGATGAAT
CTGATGAGATTGTATGTTTTCGTTTATTTACCCTGTATCATCAAATAAAT
TATATTTTATATATAAAGATAAAAGCTTTAAAAATTATATGAAATCAGTT
GAAGTTAATATAATTTTGATAAATAAGTTATATAAAACTTAAATTACAGC
TGGAACTGTAAAAATATAATATCAATTTTTATAGTTTTGGCCGTTTTTTT
AGGGAAATAAAACAATGTGGGACGCCCCTGATACGATTACATAATGAAAT
CTTTATAAATATTATTTCAGATGTAAACCACGGCCCATACCCCAGTGGAG
AGCCTTATTTCTTCCTTTTACCAATAGTATTTGGGTTATATTGATTTTGT
CCATATTTTTCTTTACTTCAATTCATTGGTTATTTACAGTACAAATACAA
CACGACCCAGGATTTACATTAAATCAATGTTTCTTCAACACTTATAAATC
TTTTTTTAATCAGGGTAAATAGTATATATTTGAATCCTTTCGAATATATC
ATTACATCCCTAAATATTTTACCCACATTAGCAATACATTCATGGCCAAA
GGACTATAGCTCTAAGATTTTATTCATTTTTTGGTGCTTGTTCGTACTGC
TAATTACTGCTGGTAAGTATTTCCTTTCTATAAATTACCCTAATTAAAAG
ATAATAATTAAATACAATTACCATAGCATACTCTAGTCAACTTATTTCAA
GTTTAACTTCACCCACGCTGAGTAAAGCCCTTAATTCGGTGGAAGAAATT
GCAGAGCAAAATGACTTAAATGTAGTTTTCACTAATGGAACAATACATGA
AGTAATTTTAAGGGACTCTAAGGAGAAGGCCTTTAAAAAGCTCTGGAAAA
AAGTAAGTTAAAGTCTAGAATAATTTATTATTAAGAATCCTTCACCCTAA
CACTAATTATTATTATAACACCACAGATCCAGTCACAAGATCCAAGTGAA
ACGTTTACAAATTCATTAGATGAGTTATTCGCAGACATGTATCCAAATTG
CTCCAGCGTAATAGTAATGGATTATACACCATCTCATGCTGCAAGTATGA
TCAATTACATGTCCCTAACAGGTAAGGGATCCATCCTTTCAGAATATTAA
GTTATAACGCAGGGGTGTGAACAGGGGGTGGACTGAAGGGGGTTGTAGCC
TACCCTCCCCTCCCCAAAATAGGAGTTTTTATATGTTAGTAGAATTTTTT
TTGGTCAAGATGAAATTTTTTATTTAAAAATAGTGGCAAAATTTATTTCC
TGAAAGATTTTTATTAAAAAAAAAAAGAAAGTCATTCGGCAAATTATGCA
GCACAGGAGAGTTAAATATTTGAATATTTTCTACAAAATTTAATTAAATT
TTTTTTCTACAAAATTTAATTTTTCGATTTTTTGTGACAACTGCGGATTT
TTGATTTTTTTTTCCAAAAAATGTAATGTTTGAAATTTTTTGTGAACAGC
TCTGAATTTTTTTTCAAAAAAAATCAATTTTTTGTGTGTGGCTTATGATT
TTTTAATGTCTTAATGCTTAATGTGCTTAGTGTTTAATGTCCAAGCCCCC
TCCCCTAAATATAATCCTATGAACGCCCCAGTAACGCTATAGAAAAGGAT
AAGATCCATATATATTCTGAAATAGGCAAAAGTTACTTATATCAACTCAA
AGAAGTATTCTTTAACATGGGATATGGGTTTGCTCTTCAAAAAGACTCGG
ATCTAACCCATTCATTCAACCATTTGTAAGTTCTGAAATTATTAATTAGT
TATTTTCTAACTATCGTAGTTTTCATTTGTTCTTCTCCAGTATTAGGAAA
TCTCTGTATTACGGATTGAACATGAAATGGATACAGGATAKTATATTCAA
GATGAGACTGCTTAATAATCAAAAAGTCAAAGTAATTCGTTCTAAAATCT
CACTCTAAAATATCTTATTATTAATAATTCTTTTTTCAAAAAGACTAATT
TGGAACTTGAGAATCAAAAAAATATCAAAATCAATTTAATGCATCTCCAA
GGAGCCTTCTTTGCTCTAATTCTGGGCTTCATTTTATCTATTCCAATATT
TATGACTGAAAAATTGCTGATGCGTCAACCTAGAAAATAA back to top
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