Show in GBrowse|https://licebase.org/fgb2/gbrowse/lsalmonis/?q=lcl|LsalIR340-Anna|LsalIR340
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Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image |
Title |
Gene or target symbol |
Sex/Stage |
Phenotype |
Date |
|
RNA_AE F255 |
|
both- preadult II male
- preadult I and II female
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-Missing- -Missing- |
22.02.2016 - 10:01 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
LSalAtl2s915 | supercontig | LSalAtl2s915:34803..37003 + |
Analyses
This mRNA is derived from or has results from the following analyses
Analysis Name | Date Performed |
race | 2015-04-07 .848711 |
Properties
Property Name | Value |
Matches | 1823 |
Identity | 100.0 |
Coverage | 100.0 |
Mismatches | 0 |
Unknowns | 1 |
Indels | 0 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA from alignment at LSalAtl2s915:34803..37003+ Legend: polypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >lcl|LsalIR340-Anna|LsalIR340.mrna1 ID=lcl|LsalIR340-Anna|LsalIR340.mrna1|Name=lcl|LsalIR340-Anna|LsalIR340|organism=Lepeophtheirus salmonis|type=mRNA|length=2201bp|location=Sequence derived from alignment at LSalAtl2s915:34803..37003+ (Lepeophtheirus salmonis) ATGAAACACTCCAACATGAAATCTTCATTCATAGTTTTCATAATATTTTC
TTTTTCAATCATTTTATTTCCTTTATCGTTTGCATTATTATCAAAGTGTT
CCATTTTACCTCATCTTCAAGAATGGCTTTTCTCATATTTATCCAAGAGA
GCAATTGTATCTACAATTCTAATAATGGATCCTTCGCAAAAAATGGAGTA
AATAACTATGTCTCTTTTTGTGCTTTAAGCACAAAAACACTAGCAAATTT
TATACACAATATATACCTATTACTTTTAGGAATACAAATTTCGTAATGAA
TCTTTACCATATAACTACAAACCATGGCAGCAGTTTTTCAACCCTCGATT
TAAATCCTCATTTGATCCGTAATTTACCCCATAGCAACAACTTATTTATT
GTAATTGAAACTCCTGGATTACTTCAATTTTTAAATAAAATTTCTTCCAA
TGCTTTGACAAAAAATCATTGGCTAATTTTGAATCAAGATATTCCTCTAA
TCAACTTCACTTATATATCCGGTAAGAAATAAAATCTTAAACTTATAGTG
AAATGCAATCAATGTATTTATTTATACTTAGTCGATTAATTGAAAGAAAT
TATATGTTTATTAATATTTTTTTTTTTTGCAGGGATAAGTCTCTATTCTC
AGTTATTTGTGCTGGAGCCAAACTCTGGAGTCTATGAAATTTATAGAAAG
AATAATAACTTACCTAGAGTCATTAATCAAATCTACGATCAAAACCTCCG
TCCCACTAAAAATTTTGTTTATCACTTAATAGAGAGGCGTAAAAATTTGA
GTGGAGTTACAATTAACGTGGGTTATTTTAATCATGAAATATTTGACCCA
ATTAGACAATCCGGATTTTTCTATGAATTATTTTTCATGATAGCCCATAA
TTTTAACTTAAGGATTAATTATATCAATTGTCCTGATAACATTTATGGTA
TCCGATTGAATGGAAGCGTGTATAATGGAATATTAGGCATGATCCAAAGA
GGAGAAGTTGATATTAGGTAAGGTTAGTTATTTTCGATCTAAGCATTTAT
CGTTTAAGTCAGGATTTCTTTTTACAATGTAGTCCTATGGATTTTACGAA
AATAAGTGCTCGAACAAAAGACTTTGACTTTTCTACATTTCTTCTTAAAA
CAAAGCTCATGCTTTTTATGCAAAATAAAAAATTCTCAGAGTTTCAATGG
TATTCTATTCTCCATGTTTTCGACTGGCAATTCTGGATTTCTATCTTATG
TCTCTCACTTGTATTTACCTTGGTTGTTTTTTTTATAAGACGAGTATTAA
CAGCTGGATTGCTTTGAAATAAAATTATCTTTAACTTCTTAAATAATTTT
AATCCTAGGCTATACAACGAACATCGGAAATACCCATTGTCTTTCCATCA
TTCCTCATGGTATTTTTTACACTATTGGGACAGGAGCCTTCCCCATGCAT
AAATAAGATTACATCTCTACGATTGCTTATTTTAAATATATCATTGTTTG
GTGCTCTAATCTCATGGATATTTAATGGTTCTCTTATTTCTGTATTCACC
TCCGTAAAATCATCCTTACCAGTTCAAAGGTATACCATATTTTTGAAAAA
GCTGATTAAAGAAAATAATTTATATTTGTATAGCTTAAATGACTTAGTTA
CACATTCAGACTATCGATTGATAATTGCGAATGGTACTGCTGTCACAGAT
TGGTTTACTAACACGGAGAACGAGACTGACCCCAGTGTTTTAGATAGATA
TAGGATGGTTTATCAAAAGATAATAGAGGGTAATGAGGAGAAGGTTTTTT
TCCCGTTTGATAAAATCCCTGAAATTTTGGCTACCAATAAAAAATATGTC
TATCTTGGAGAAGAATTTACAATGTTAACTCAAACAAAAGACTATCCCTG
TAGACTTCAAGCAAGCWCACTCGACTTAGGAAGGCTTGACTTGGGATGGA
TTTATAAGAGGAATTTTGAGTATAGAGAGTTTTTTGAATATCAATTAAAA
AAACTTAAGGAGACTGGAATGATTGATAGGGAATGGAAATTACTTCAAAT
CAAAGTCAAAAGTCGACTGTGTCATTATAAAAACAAGAATAATGACTTTA
TGCCCATTATAATTCAGCAAATAGTACTCATATTTATTATATTGGGTATT
GGTATCCTTTTTGCTTTAATAATTCTTTTATTTGAGTGTAAGATTTGGTA
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