EMLSAP00000000070, EMLSAP00000000070 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000000070
Unique NameEMLSAP00000000070
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length276
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006028Gamma-aminobutyric acid A receptorPRINTSPR00253GABAARECEPTRcoord: 208..229
score: 42.56
coord: 182..202
score: 50.7
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 51..62
score: 45.32
coord: 17..33
score: 34.04
coord: 173..185
score: 32.02
coord: 97..111
score: 45.43
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 12..230
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 186..226
e-value: 8.7E-13
score: 48.5
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 180..230
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 15..178
e-value: 1.4E-24
score: 86.3
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 13..182
e-value: 2.4E-41
score: 140.8
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 15..178
NoneNo IPR availableGENE3D1.20.58.390coord: 183..230
e-value: 2.8E-19
score: 68.6
NoneNo IPR availablePANTHERPTHR18945:SF320SUBFAMILY NOT NAMEDcoord: 12..230
NoneNo IPR availableTMHMMTMhelixcoord: 248..270
NoneNo IPR availableTMHMMTMhelixcoord: 181..203
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 97..111

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000000070 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000000070EMLSAT00000000070-695917Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000000070 ID=EMLSAP00000000070|Name=EMLSAP00000000070|organism=Lepeophtheirus salmonis|type=polypeptide|length=276bp
YVCTEEKPLEFEDITYAADVFFAQEWKDHRLILPDNMTREYRLLPVEWLH
LIWRPDSFFKNAKKVTFQTMTIPNHYLWLYKDKTILYMVKLTLLLSCPMN
FENYPHDEQNCKLSMEMSHTTDDLIFIWLPEDKTPLAVDNGIQLPQLELV
SNDTGDCTSVYSTGNFTCLEVIFKFRRRLGYYLFHTYIPTCLIVMMSWIS
FWIKPEAXXARVTLGVTSLLTLSTQHANINLFDIGKTGIQRFLSMGKYVI
TYYFNGVLMILHVNPRYLNIFLNNIF
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