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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR006028 | Gamma-aminobutyric acid A receptor | PRINTS | PR00253 | GABAARECEPTR | coord: 208..229 score: 42.56 coord: 182..202 score: 50.7 |
IPR006201 | Neurotransmitter-gated ion-channel | PRINTS | PR00252 | NRIONCHANNEL | coord: 51..62 score: 45.32 coord: 17..33 score: 34.04 coord: 173..185 score: 32.02 coord: 97..111 score: 45.43 |
IPR006201 | Neurotransmitter-gated ion-channel | PANTHER | PTHR18945 | NEUROTRANSMITTER GATED ION CHANNEL | coord: 12..230 |
IPR006029 | Neurotransmitter-gated ion-channel transmembrane domain | PFAM | PF02932 | Neur_chan_memb | coord: 186..226 e-value: 8.7E-13 score: 48.5 |
IPR006029 | Neurotransmitter-gated ion-channel transmembrane domain | SUPERFAMILY | 90112 | Neurotransmitter-gated ion-channel transmembrane pore | coord: 180..230 |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding | PFAM | PF02931 | Neur_chan_LBD | coord: 15..178 e-value: 1.4E-24 score: 86.3 |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding | GENE3D | 2.70.170.10 | | coord: 13..182 e-value: 2.4E-41 score: 140.8 |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding | SUPERFAMILY | 63712 | Nicotinic receptor ligand binding domain-like | coord: 15..178 |
None | No IPR available | GENE3D | 1.20.58.390 | | coord: 183..230 e-value: 2.8E-19 score: 68.6 |
None | No IPR available | PANTHER | PTHR18945:SF320 | SUBFAMILY NOT NAMED | coord: 12..230 |
None | No IPR available | TMHMM | TMhelix | | coord: 248..270 |
None | No IPR available | TMHMM | TMhelix | | coord: 181..203 |
IPR018000 | Neurotransmitter-gated ion-channel, conserved site | PROSITE | PS00236 | NEUROTR_ION_CHANNEL | coord: 97..111 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000070 ID=EMLSAP00000000070|Name=EMLSAP00000000070|organism=Lepeophtheirus salmonis|type=polypeptide|length=276bp YVCTEEKPLEFEDITYAADVFFAQEWKDHRLILPDNMTREYRLLPVEWLH LIWRPDSFFKNAKKVTFQTMTIPNHYLWLYKDKTILYMVKLTLLLSCPMN FENYPHDEQNCKLSMEMSHTTDDLIFIWLPEDKTPLAVDNGIQLPQLELV SNDTGDCTSVYSTGNFTCLEVIFKFRRRLGYYLFHTYIPTCLIVMMSWIS FWIKPEAXXARVTLGVTSLLTLSTQHANINLFDIGKTGIQRFLSMGKYVI TYYFNGVLMILHVNPRYLNIFLNNIF back to top
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