EMLSAP00000000084, EMLSAP00000000084 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000000084
Unique NameEMLSAP00000000084
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length357
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 2..18
score: 27.34
coord: 164..176
score: 40.31
coord: 79..93
score: 52.64
coord: 35..46
score: 51.96
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 1..322
IPR002394Nicotinic acetylcholine receptorPRINTSPR00254NICOTINICRcoord: 23..37
score: 47.04
coord: 41..53
score: 58.29
coord: 59..77
score: 54.33
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 177..290
e-value: 3.5E-37
score: 128.4
coord: 290..321
e-value: 1.8E-5
score: 24.6
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 170..330
IPR027361Nicotinic acetylcholine-gated receptor, transmembrane domainGENE3D1.20.120.370coord: 170..331
e-value: 2.4E-49
score: 166.4
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 1..169
e-value: 1.1E-63
score: 213.9
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 1..170
e-value: 5.5E-56
score: 189.0
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 1..170
NoneNo IPR availablePANTHERPTHR18945:SF88ACETYLCHOLINE RECEPTOR PROTEIN ALPHA, INVERTEBRATEcoord: 1..322
NoneNo IPR availableTMHMMTMhelixcoord: 305..323
NoneNo IPR availableTMHMMTMhelixcoord: 203..225
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 235..257
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 79..93

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000000084 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000000084EMLSAT00000000084-695931Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000000084 ID=EMLSAP00000000084|Name=EMLSAP00000000084|organism=Lepeophtheirus salmonis|type=polypeptide|length=357bp
MTTDGLEDHEWKDYKFTWDPSEYGGVTEIYVPSEHIWLPDIILYNNADGD
YIVTTMTKAILHYDGKVVWTPPAIFKSSCEIDVEFFPFDKQTCFLKFGSW
SFDGFQVDLVHINSQPDNDTVSYGMDLSEYYLNVEWDILEVPAERHVKTY
PCCPEPYPDIYFSIIIRRKPLFYVVNLIIPCVGIFYLSILVFYLPAQSGE
KTALVIAILVSQTLYFTLVIEVIPATSKTLPLLGRYLIFSMIFIAIAVTL
TTIILNLHYRKPSTHRMPQWVRRTFIQRLPRILLMRVPIQEDQDWGIVAM
VLDRLFLWVFGISALVGSIMILVESPNMYEEVSPIDVIFSKIALEESSRV
SQEKVFM
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