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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR013283 | ABC transporter, ABCE | PRINTS | PR01868 | ABCEFAMILY | coord: 38..53 score: 68.5 coord: 66..90 score: 76.48 coord: 121..146 score: 78.31 coord: 93..113 score: 62.1 coord: 154..170 score: 61.41 coord: 170..196 score: 58.96 |
IPR003593 | AAA+ ATPase domain | SMART | SM00382 | AAA | coord: 116..308 e-value: 9.0E-8 score: 41.8 coord: 386..555 e-value: 9.5E-10 score: 48.4 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 115..305 e-value: 6.0E-28 score: 97.3 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 385..552 e-value: 4.1E-32 score: 110.8 |
None | No IPR available | GENE3D | 3.30.70.20 | | coord: 20..85 e-value: 2.0E-9 score: 36.2 |
None | No IPR available | PANTHER | PTHR19248 | ATP-BINDING TRANSPORT PROTEIN-RELATED | coord: 10..615 |
None | No IPR available | SUPERFAMILY | 54862 | 4Fe-4S ferredoxins | coord: 21..155 |
IPR001450 | 4Fe-4S binding domain | PFAM | PF00037 | Fer4 | coord: 63..84 e-value: 1.2E-7 score: 30.9 |
IPR003439 | ABC transporter-like | PFAM | PF00005 | ABC_tran | coord: 116..259 e-value: 3.7E-14 score: 53.0 coord: 383..506 e-value: 1.5E-17 score: 64.1 |
IPR003439 | ABC transporter-like | PROSITE | PS50893 | ABC_TRANSPORTER_2 | coord: 357..578 score: 14.526 |
IPR003439 | ABC transporter-like | PROSITE | PS50893 | ABC_TRANSPORTER_2 | coord: 93..330 score: 12.205 |
IPR007209 | RNase L inhibitor RLI, possible metal-binding domain | PFAM | PF04068 | RLI | coord: 21..51 e-value: 7.1E-15 score: 54.1 |
IPR017900 | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site | PROSITE | PS00198 | 4FE4S_FER_1 | coord: 69..80 |
IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | PROSITE | PS51379 | 4FE4S_FER_2 | coord: 60..89 score: 10.465 |
IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | PROSITE | PS51379 | 4FE4S_FER_2 | coord: 21..51 score: 6.559 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 115..304 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 384..551 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000133 ID=EMLSAP00000000133|Name=EMLSAP00000000133|organism=Lepeophtheirus salmonis|type=polypeptide|length=615bp MPPKTNQRKKKDSSVNSELTRIAIVNADRCKPKRCRQECKKSCPVVRMGK LCIEVSPNSKIATISEELCIGCGICVKKCPFEAVVIINLPSNLETETTHR YSANSFKLHRLPVPRPGVVLGLVGTNGIGKSTALKILAGKQKPNLGLFNE PPDWSDILHYFRGSELQNYFTKILEDNLKAVIKPQYVDQIPKAVKGSVQS LLDKKDEMNNQNSVANLLDLSPQVRQRKVDELSGGELQRFACAMVCIQKA DIFMFDEPSSYLDVKQRINASQAIRNLMHPSKYIIVVEHDLAVLDYLSDF ICCLYGVPGAYGVVTLPSGVREGINIFLDGFIPTENLRFRQENLIFKVSE NATEEEVKRMSSYNYPTMSKTMGTFKLSVQAGNFSDSEILVMLGENGTGK TTFIRMMAGKLEPDTGSGEIPQLNISYKPQKISPKSQGTVRTLLHEKIRD AYIHPQFVADVMRPMKIDDIIDQEVQNLSGGELQRVALTLCLGKPADVYL IDEPSAYLDSEQRLVAAKVIKRFILHAKKTGFVVEHDFIMATYLADRXIV FEGLPSIDTRANCPQSLLTGMNKFLSQLAITFRRDPNNYRPRINKMNSQN DSMQKAAGNFFFLED back to top
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