EMLSAP00000000233, EMLSAP00000000233 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000000233
Unique NameEMLSAP00000000233
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length1765
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 490..518
NoneNo IPR availableCOILSCoilCoilcoord: 32..53
NoneNo IPR availableCOILSCoilCoilcoord: 283..287
NoneNo IPR availableCOILSCoilCoilcoord: 96..117
NoneNo IPR availableCOILSCoilCoilcoord: 273..275
NoneNo IPR availableCOILSCoilCoilcoord: 266..270
NoneNo IPR availableCOILSCoilCoilcoord: 271..272
NoneNo IPR availableCOILSCoilCoilcoord: 276..282
NoneNo IPR availablePFAMPF14635HHH_7coord: 975..1079
e-value: 5.5E-37
score: 125.9
NoneNo IPR availablePANTHERPTHR10145:SF1TRANSCRIPTION ELONGATION FACTOR SPT6coord: 1..1725
NoneNo IPR availableSUPERFAMILY55550SH2 domaincoord: 1377..1456
NoneNo IPR availableSUPERFAMILY158832Tex N-terminal region-likecoord: 552..790
coord: 370..482
IPR000980SH2 domainSMARTSM00252SH2coord: 1372..1461
e-value: 3.1E-5
score: 33.4
IPR000980SH2 domainPFAMPF14633SH2_2coord: 1337..1555
e-value: 8.8E-76
score: 253.7
IPR017072Transcription elongation factor Spt6PIRSFPIRSF036947Spt6coord: 1..1627
e-value: 0.0
score: 1994.6
IPR017072Transcription elongation factor Spt6PANTHERPTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6coord: 1..1725
IPR022967RNA-binding domain, S1SMARTSM00316S1coord: 1261..1320
e-value: 2.5E-5
score: 33.7
IPR003029Ribosomal protein S1, RNA-binding domainPFAMPF00575S1coord: 1267..1316
e-value: 6.0E-9
score: 35.7
IPR003029Ribosomal protein S1, RNA-binding domainPROSITEPS50126S1coord: 1267..1322
score: 12.709
IPR023323Tex-like domainGENE3D1.10.3500.10coord: 960..1012
e-value: 2.3E-31
score: 109.1
coord: 559..791
e-value: 2.3E-31
score: 109.1
IPR027999Death-like domain of Spt6PFAMPF14878DLDcoord: 1091..1198
e-value: 2.1E-42
score: 143.6
IPR028088Helix-turn-helix DNA-binding domain of Spt6PFAMPF14641HTH_44coord: 328..437
e-value: 2.0E-29
score: 101.9
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 1265..1316
e-value: 9.3E-10
score: 37.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1265..1314
IPR023097Tex RuvX-like domainGENE3D1.10.150.310coord: 1022..1176
e-value: 1.5E-24
score: 86.1
IPR028083Spt6 acidic, N-terminal domainPFAMPF14632SPT6_acidiccoord: 42..131
e-value: 7.0E-13
score: 48.4
IPR006641YqgF/RNase H-like domainGENE3D3.30.420.140coord: 812..959
e-value: 1.5E-15
score: 57.2
IPR028231Transcription elongation factor SPT6, YqgF domainPFAMPF14639YqgFcoord: 809..969
e-value: 4.1E-34
score: 117.1
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 809..970
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 985..1079

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000000233 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000000233EMLSAT00000000233-696080Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000000233 ID=EMLSAP00000000233|Name=EMLSAP00000000233|organism=Lepeophtheirus salmonis|type=polypeptide|length=1765bp
MADFMDQEAVEDSEEEMSAEEXSSRRPKGKKKKKHSRQLSSDEEEEEEDE
DEEKAREDMKGFIDDDDDGVEEEKESVSGSDTGESSSRRRKKKRRKRRSE
DEEDIDEEDMELLQENLGIKIQKKRKRIRMGSGSEEDSDGESRIASQRSS
GDSEGEAHDKRSSSGKNKSIRASSVATSSKAGFIDSEEEAEKAMEEDEDD
GFIVDEDGVPIQKRRKKKKTHIFEDSARQLAEDIFGVAFDYEEFEDDRVE
EESDDEEEDDYDDEEAAEAXRXKKXKKQKRKXAKTIFEIFEPRELELRHF
TDLDNEVRNTDIPERMQLRSIPVTSVPEGSDELDREAEWIFKYGFIKPTI
SKQDGYSRDDCQEWVRKDRTVEKIKKALDFMRQQFHEVPFIAFYRKEYVE
PELKINDLWRVYFMDENWCQLQSRKKNLRKLFKSMQNWQGEQLVADMDKP
IPEGMRILSNEDLQNIDNIESYEELKDMDLFFKLYYSKDLEAMQIAIKQK
RREAREAKRSNRKKKTKIITNEDGEEIQVTDEESPVLDSEDSATDDQDLL
RQASKNDPYSICRKYGLIGMSKRFGLTPEQFAENLRDGYQRHDLDQEPSE
PLEVAAEYVNQKFKDPNDVLKAVKFVVATQLSREPEVRRVTREIFNERAT
ICVAPTKKGLTEIDESHYCYSMKYLKNKLVRNLSGTQWLNLTAAEDQKLI
TITIATEIPSLSGNKQRNHLEEAKELYKHDGFSKHVTEWNNLRAECIETT
FKEIIYPVLRQELRIRLTREAKDGVLRQCKNKMYDYLKTAKYTVSFEEED
EDDWDSSGGCRVMSISYENDTDVASYAVCIGVNGEVIDFLKMEALLMRSN
ISQDSKRNRPSGDRRNKDVDMAKLKSFIIQKRPHVIVVGAIDRDAVRVRY
DVEAVVHELVEGEHQFPKIGVFLMDDNLAKVYSNSTRASQDFRDYPNVLR
QGISLARRMQDPLIEFSQLAGPENEILCLNFHPLQNRLEEEELLEAINIE
FINRTNEVGVDINECVSRPQTSNLVQFVGGLGPRKGAALLKTLRQMQSSQ
RLENRQQLVTLCHMGPKVLINCAGFIKIDTTSLGDSEVYLEVLDGSRIHN
EAYEWARKMAVDALEYDEEEGNPATALEEIINDPEKLAELDLDAFARELE
RQGFGNKSITLYDIRAELYHMYKDLREPYRPPDPEEIFNIVTKENPETFY
IGKLINATVSGFTYKKPQGEELDQAAPIRAGEENVWQCPFCGRDDFPELT
EVWNHFDAGMCPGKATGVKIRIDNGVSGFIPIKNLSDKQVINPEDRVKIG
QTIFCRIVKINPERFSVECISKTSALVDKEHEWKPAKDDFYDEEAQARDM
EQSTMKKKQQERQTYIKRVIVHPSFYNVGYKEAERLIAGMDQSDVVIRPS
SKGEDHLTVTWKVTDGIYEHIDVREEGKLNAFSLGQSLWIGNEEFEDLDE
IIARHINPMAAHARDILNFKYYRDTEGGKREVADEMLKADKAASPGKIHY
FLSVSKAYAGKFMLSYLPRTKTLHEFVTVTPDGFRFRKQVFETLSSLMKW
FKEHFRDPLPGTPNTPGRLTSRTPYMTGGTPGPGTITPGAMSLATGTPYG
TTPGAMSNYGVSVNTPYTPSGQTPFMTPYHTPGPSTTPRPSRGTPGPTPN
RSFPTVPTPRSSSGGGGXVPSSGGRPSGGQXSHQQGRVRSSYSKSPAHGH
RGGDSWQAALDAWPGGSSRRTPRQGDGSNTPRGFDGRQKTPKYGGNNTPK
RTPKAFGDATPLYDE
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