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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 959..987 |
| None | No IPR available | COILS | Coil | Coil | coord: 495..516 |
| None | No IPR available | PANTHER | PTHR19932 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN | coord: 179..1007 |
| None | No IPR available | PANTHER | PTHR19932:SF10 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 | coord: 179..1007 |
| IPR000164 | Histone H3 | PRINTS | PR00622 | HISTONEH3 | coord: 141..159
score: 76.43
coord: 175..196
score: 55.63
coord: 159..175
score: 69.57
coord: 93..114
score: 54.45 |
| IPR000164 | Histone H3 | SMART | SM00428 | H3 | coord: 93..195
e-value: 7.0E-46
score: 168.4 |
| IPR000164 | Histone H3 | PROSITE | PS00959 | HISTONE_H3_2 | coord: 126..134 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 690..728
e-value: 240.0
score: 1.9
coord: 362..403
e-value: 78.0
score: 5.1
coord: 406..450
e-value: 21.0
score: 8.7
coord: 312..352
e-value: 5.7E-6
score: 35.8
coord: 188..226
e-value: 200.0
score: 2.4
coord: 270..310
e-value: 99.0
score: 4.4 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 318..352
e-value: 7.6E-5
score: 22.3 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 319..361
score: 10.776 |
| IPR022100 | Protein of unknown function DUF3639 | PFAM | PF12341 | DUF3639 | coord: 702..728
e-value: 6.6E-9
score: 35.4 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 196..477
e-value: 7.0E-31
score: 106.3
coord: 713..749
e-value: 7.0E-31
score: 106.3 |
| IPR007125 | Histone core | PFAM | PF00125 | Histone | coord: 117..189
e-value: 1.2E-23
score: 82.8 |
| IPR009072 | Histone-fold | GENE3D | 1.10.20.10 | | coord: 93..190
e-value: 2.2E-42
score: 143.6 |
| IPR009072 | Histone-fold | SUPERFAMILY | 47113 | Histone-fold | coord: 80..190 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 339..353 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 319..459
score: 10.997 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 197..476 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000659 ID=EMLSAP00000000659|Name=EMLSAP00000000659|organism=Lepeophtheirus salmonis|type=polypeptide|length=1210bp
MKMDPQFIIVFRRAIALKMVKHKHSKKTTAGBAKXVQNQNDTASNNSSEF
LVARSSQRSDNSSELSFMYPTDLNKKKSISTPQGKNISKGIATPTPKKRR
FRPGTKALREIRHFQKKTDLLIPHLPFSRLVKEISIKASSKTDIRFQSSA
LQALQEAAETYLVHLFEDVVLLAIHAKRVTIMPKDIILMISDLKYTHREG
NCIIKYAPSSGKIYTGGADGEVREFKNMDDDESKSHLIGDETLALAVGKT
HFYTSATNTNRVMSYKIEDGSEDCIVIRFTADVTTLDIVEKEGKILIAAG
SDDMIVKVMNLNSHKEFIFKGHEASILSVCLDPKNLDKVVSTSCDGSIIL
WNIADEKIKKIHNSVLPRFSDFQSSKTLSQVVWNPADGSTFAVAHQNGIY
FYNSTNGTEVKNFQMNNSDDKNEYLSVLDWFINGEYIVGGTSSGKIIIWA
YKDGSIHYNNTPGRSNGIRSIAWSPSKIEEISFLNKEAYWGILTVDLQEE
NEDRLEGANEMLNENEMMRVFEENDGDDDDENAFSIKKIKASAGFQEDQE
GLDVFDPNISSRGIDEKVGEILMEKNISKAENPAPLSSFDMKLQDTFQPA
STPVHLSSRFMVWNSIGIVKAQNLDDESAIDIEFHDTSIHHAFHLPNPHG
YTMACLSNLAVVFAAEADGEEEDEDHIASKLNVHYFASSDYNKEWSIDMP
KGEEILCICIGSSWIAAGTDKRNLRIFTLAGMQKNVFSLNGPLVTLSGHG
DYIFIVTHFGAPLVHNQSLYVAVLDISNYKRHLISHFTPLPLTPSSSLTW
AGFSDEGTPTFSDSVGVVRIFDYSSHQWTEVCNMSSYCKGKSDSHFMLGL
SEKEEIVRAIKCKGTKYPVTVPKPTVTVLPMQLPLCDQGSEKTTLEEKYL
KGEILNKNEDDIAATNETIIKLFALAIKSDQERRALEICKLMNMDTLKIA
VKYASKLRKLQLANKVNELARQISEKEEERRDKLRLSTLCSQNDMFETQE
EEEQEENGHQDSALQDNPLLNAKIKKKNNVPLKCISDTQSQGDTRNPFKK
TLLKNTPQAGSIRTGLVFDSISQSSQNSQIKSSQDNFPNKTIVKKSEKQR
LITHSSSVRQGNNDINKETQSSYKQLKGFLLWLXENPQDSNNIVKNKELG
LKIWKELPKVEKDKYKVPRTPLSIVSTNRKRSLEDHIVRNTDSQKKAKPS
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