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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 47..63 score: 59.38 coord: 96..104 score: 64.76 coord: 63..78 score: 58.29 coord: 104..112 score: 62.02 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 44..115 e-value: 6.9E-37 score: 138.5 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 46..114 e-value: 2.5E-31 score: 107.6 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 47..73 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 44..119 score: 18.356 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 600..675 e-value: 3.7E-4 score: 19.3 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 508..599 e-value: 1.6E-37 score: 128.9 coord: 279..280 e-value: 1.6E-37 score: 128.9 coord: 103..131 e-value: 1.6E-37 score: 128.9 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 468..675 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 45..102 e-value: 1.4E-28 score: 98.4 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 518..584 e-value: 3.7E-8 score: 32.6 |
None | No IPR available | PANTHER | PTHR24082 | NUCLEAR HORMONE RECEPTOR | coord: 13..675 |
None | No IPR available | PANTHER | PTHR24082:SF4 | NUCLEAR HORMONE RECEPTOR | coord: 13..675 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 44..115 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000733 ID=EMLSAP00000000733|Name=EMLSAP00000000733|organism=Lepeophtheirus salmonis|type=polypeptide|length=678bp MKIKNRECDSLLEISNSLYNTRSGNSACGGSDSNNSVHNAQIEIIPCKVC GDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQ FCRLQKCLALGMSRDGGGALXPSGRSSHNGNSPDSSCFDTQQQPSSTDMS YEGGGATSGFSYGSDLSPYNGGYTFTNIPPPPHPPPPPPQQQHPQPGSEW TDYGNVXSTTSPFXSRSTPLDIPNPNNTNSSNSNNNNNNNNSSNSGGIHG APGPPESRIPSTSTASTSSSSSSSSSSSTSTSTTTTSSSGSASRHNNNNT STAAIPKAESPSTLVAVPGMKHPSQTSYGSSNRIGMTIKQEVTDMISGQT HLEGREEEDPLSMGYDVDSTSNFATHQPSKSHHHLQPPPHPPSLHPSHHQ PNHPSHHHPHPAXQQXQPPVHTQXXQPQAQQHPGHHHHPSGSFSSGMHNN HELYLLQEELQNDRIGVLLTNSIFEAHTRTSLLTRSQIHEQCKQGVDQVK LYTFKNMSQEELWLCAAQKLTNVIQQIIEFAKMVPGFMKFPQDDQITLLK GGAFELAVIRMSRYFDLSQNAVLFFDIMLPMESFMTTGDTGEMNLVNQIF DLAKAVFQTLQRELTNRPPMVPTKGDVSVLTKLLNKRHTLREINFLHTEA LTRFRSGNGSMIEFPALYRELFSSDHPS back to top
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