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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR003593 | AAA+ ATPase domain | SMART | SM00382 | AAA | coord: 1228..1402 e-value: 1.5E-9 score: 47.7 coord: 449..623 e-value: 3.5E-10 score: 49.8 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 899..946 e-value: 7.9E-5 score: 21.6 coord: 997..1021 e-value: 7.9E-5 score: 21.6 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 1201..1435 e-value: 4.0E-62 score: 209.2 coord: 422..654 e-value: 2.8E-63 score: 212.9 |
None | No IPR available | GENE3D | 1.20.1560.10 | | coord: 1510..1837 e-value: 1.8E-50 score: 171.3 coord: 88..409 e-value: 1.3E-19 score: 69.9 coord: 728..898 e-value: 1.5E-20 score: 72.9 |
None | No IPR available | PANTHER | PTHR24223 | FAMILY NOT NAMED | coord: 12..1889 |
None | No IPR available | TMHMM | TMhelix | | coord: 141..163 |
None | No IPR available | TMHMM | TMhelix | | coord: 325..347 |
None | No IPR available | TMHMM | TMhelix | | coord: 239..261 |
None | No IPR available | TMHMM | TMhelix | | coord: 1580..1602 |
None | No IPR available | TMHMM | TMhelix | | coord: 1015..1037 |
None | No IPR available | TMHMM | TMhelix | | coord: 86..108 |
None | No IPR available | TMHMM | TMhelix | | coord: 789..811 |
None | No IPR available | TMHMM | TMhelix | | coord: 213..235 |
None | No IPR available | TMHMM | TMhelix | | coord: 357..379 |
None | No IPR available | TMHMM | TMhelix | | coord: 1513..1530 |
None | No IPR available | TMHMM | TMhelix | | coord: 734..756 |
None | No IPR available | TMHMM | TMhelix | | coord: 1766..1788 |
None | No IPR available | TMHMM | TMhelix | | coord: 1074..1096 |
None | No IPR available | TMHMM | TMhelix | | coord: 1098..1120 |
None | No IPR available | TMHMM | TMhelix | | coord: 1675..1697 |
IPR001140 | ABC transporter, transmembrane domain | PFAM | PF00664 | ABC_membrane | coord: 742..894 e-value: 9.6E-12 score: 44.7 coord: 1579..1806 e-value: 7.2E-22 score: 77.9 coord: 1042..1149 e-value: 1.1E-8 score: 34.7 coord: 111..369 e-value: 5.3E-25 score: 88.2 |
IPR003439 | ABC transporter-like | PFAM | PF00005 | ABC_tran | coord: 1219..1353 e-value: 4.7E-20 score: 72.1 coord: 440..574 e-value: 7.8E-21 score: 74.6 |
IPR003439 | ABC transporter-like | PROSITE | PS50893 | ABC_TRANSPORTER_2 | coord: 1201..1425 score: 21.609 |
IPR003439 | ABC transporter-like | PROSITE | PS50893 | ABC_TRANSPORTER_2 | coord: 422..646 score: 22.076 |
IPR017871 | ABC transporter, conserved site | PROSITE | PS00211 | ABC_TRANSPORTER_1 | coord: 1326..1340 |
IPR017871 | ABC transporter, conserved site | PROSITE | PS00211 | ABC_TRANSPORTER_1 | coord: 547..561 |
IPR011527 | ABC transporter type 1, transmembrane domain | PROSITE | PS50929 | ABC_TM1F | coord: 112..383 score: 29.934 |
IPR011527 | ABC transporter type 1, transmembrane domain | PROSITE | PS50929 | ABC_TM1F | coord: 987..1148 score: 14.133 |
IPR011527 | ABC transporter type 1, transmembrane domain | PROSITE | PS50929 | ABC_TM1F | coord: 1521..1822 score: 27.753 |
IPR011527 | ABC transporter type 1, transmembrane domain | PROSITE | PS50929 | ABC_TM1F | coord: 742..899 score: 16.295 |
IPR011527 | ABC transporter type 1, transmembrane domain | SUPERFAMILY | 90123 | ABC transporter transmembrane region | coord: 977..1152 |
IPR011527 | ABC transporter type 1, transmembrane domain | SUPERFAMILY | 90123 | ABC transporter transmembrane region | coord: 728..898 |
IPR011527 | ABC transporter type 1, transmembrane domain | SUPERFAMILY | 90123 | ABC transporter transmembrane region | coord: 1510..1839 |
IPR011527 | ABC transporter type 1, transmembrane domain | SUPERFAMILY | 90123 | ABC transporter transmembrane region | coord: 82..392 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 1194..1422 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 414..644 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000000741 ID=EMLSAP00000000741|Name=EMLSAP00000000741|organism=Lepeophtheirus salmonis|type=polypeptide|length=1896bp MDIEEKVNLKDNKRSNANILSKIFFIWVLPLLRDGQNKAFDIPDLPSALT EDKSRYLSDNLEREWKKELEKGLRYDNTSKKRYSPSLLRALIRTFGSSLG VYGAFSFIEECVFRLLQPLAISQIVLYFSNSNHGISPTQLYIWSAVLIMS GVLYVFSHHWYFFGVVQVGMRIRIACSALLYKKSLKLSKASIGKSSVGQM VNLLSNDVNRYDLCVLFIHYLWVAPLQFILVSIITWYMVGISSMCGGAIL LVFIPLQTWIGKQFSRLRILIAGKTDKRIRVMNEIIEGMKVIKMYAWEYP FMEVVNETRRDEIQTIKKTYEYKAFNLGFFFTSSRVVLLLIFFLMIIGNE VISSKNIFLIFGLFNTVRLSLTLFFPNTISMTSEALVSTDRIQNFLLLEE IGDICSSMKHEPEVRPEVSLRIEMKNVSGKWTSNEKDDDLRNVSFQVHKR ELTAIIGPVGSGKSTILQALLGEFPVSSGDISIYGKISYASQEPWIFSGT IRQNILLGASMNHKRYLKVLKVCSLEHDLESWPDRDHTFVGEKGVALSGG QKARINLARSVYSEADVYLLDDPLSAVDSHVGRHLYEECIKNYLSRKTVI LVTHQIQYLGDASNIILLNTKGEIEDQGTLNKLLMSERDFTSFLVAQEEE TDSIFDEDELALTPKKSLNIENYMRRRQSSVSSIGSRATIDTNAMEYNDI PNEGRRTQTTESKVKGSISVALYKKYFYAGGGKWIFFFVYGLNILSQLLF VSTDWWLKQWTNAADARTNNYANASSFEILPGFQIDLFNSIYYGIYFALV GALIICSQISIRKFLILCLKSSKNLHLEMFQKVIFTKPAFFDVNPVGRIL NRFSKDIGSLDXLLPLALSDTSLIFLNAVGMFGLIISTEPKVLIPLGLIQ RWVFPLLRDGQNKEFDTPDLQSPLSEDKSRYLSDSLEREWKKELEKGLIY DNTSKKRYSPSLLRALIRTFGSSLGVYGPFVFMENCVFRILQPIAISQIV LYFSNSNHGISPTQLYIWSAVLIMSGVLYVFSHHWHFFGMVQSLKLSKAS IGKSSVGQMVNLLSNDVNRYDLCVLFLHYLWVAPLQFILVSMIAWYMVGI SSMCGGAILLVFIPLQIWIGKQLSRLRILIAGKTDKRIRVMNEIIEGISL TLFFPNTISMTSEALVSTDRIQNFLLLEEIGDICSSMKHEPEVRPEESLR IEMKNVSGKWTSNEKDDDLRNVSFQVHKRELTAIIGPVGSGKSTILQALL GEFPVSSGDISIYGKISYASQEPWIFSGTIRQNILLGAPMNHKRYLKVLK VCSLDHDLESWPDRDHTFVGEKGVALSGGQKARINLARSVYSEGDVYLLD DPLSAVDSHVGRYLYEECIKKYLSRKTVILVTHQIQYLREANNIILLNTK GETEAQGTLNKLLMSERDFKPFLVAQEEETDSIFHKNELALTPRKSLNIE NYMRRRQSSVSSIGSRATIDTNVMEYNDIPNEGRRTQTTESKVKGSISVA LYKKYFYADGGKWMFFFVYGLNISSQLIFVMTDWWXKQWTNAADARKKFG DIRNQKHFFSSYANTSSFEILPGFQIDLFNSIYYGIYFALVGALIICSQI SVRKFIFLCLKSSRNLHSEMFQKVIFTKPAFFDVNPVGRILNRFSKDIGA LDDLLPIALSDTNLIFLNAVGMSGLIISTEPKILIPLLAILIILLALRKY YLNASRSVKRLEGITKSPVISQLSTTLNGISTIRASKLENNFASEFHYLQ DIHTAAFFSFQSVTRFFGFWVDGIVSINVXATVVIFVFFNVKGGDIGISL SLSVLMARXIQWGLRQSAEVENYMTSVERVAEYGDLPSEKRLTSDKKIDP SWPNKGVIKFHNVKLKYDDQGGPYILKGLTFTINSFEKITLIKFHL back to top
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