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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 538..552 score: 39.24 coord: 454..468 score: 27.34 coord: 496..510 score: 38.26 |
IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 512..551 e-value: 2.3E-9 score: 47.1 coord: 428..467 e-value: 1.5E-5 score: 34.4 coord: 596..634 e-value: 130.0 score: 3.7 coord: 682..730 e-value: 15.0 score: 9.7 coord: 470..509 e-value: 1.1E-5 score: 34.8 coord: 556..593 e-value: 0.0074 score: 25.5 coord: 637..679 e-value: 75.0 score: 5.2 |
IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 514..551 e-value: 1.5E-10 score: 40.4 coord: 558..590 e-value: 0.011 score: 15.5 coord: 473..509 e-value: 2.6E-5 score: 23.7 coord: 439..467 e-value: 6.6E-6 score: 25.6 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 519..551 score: 15.154 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 435..476 score: 10.241 |
IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 477..518 score: 10.341 |
IPR001660 | Sterile alpha motif domain | SMART | SM00454 | SAM | coord: 7..75 e-value: 4.1E-10 score: 49.6 |
IPR001660 | Sterile alpha motif domain | PROSITE | PS50105 | SAM_DOMAIN | coord: 10..75 score: 13.167 |
IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 410..730 e-value: 4.1E-61 score: 206.0 |
IPR021129 | Sterile alpha motif, type 1 | PFAM | PF00536 | SAM_1 | coord: 9..72 e-value: 3.8E-11 score: 42.8 |
IPR025749 | Sphingomyelin synthase-like domain | PFAM | PF14360 | PAP2_C | coord: 235..308 e-value: 1.3E-23 score: 82.9 |
IPR013761 | Sterile alpha motif/pointed domain | GENE3D | 1.10.150.50 | | coord: 7..73 e-value: 2.4E-10 score: 39.3 |
IPR013761 | Sterile alpha motif/pointed domain | SUPERFAMILY | 47769 | SAM/Pointed domain | coord: 7..74 |
None | No IPR available | PANTHER | PTHR21290:SF7 | SPINGOMYELIN SYNTHETASE 1 | coord: 7..405 |
None | No IPR available | PANTHER | PTHR21290 | SPHINGOMYELIN SYNTHETASE | coord: 7..405 |
None | No IPR available | TMHMM | TMhelix | | coord: 263..285 |
None | No IPR available | TMHMM | TMhelix | | coord: 95..117 |
None | No IPR available | TMHMM | TMhelix | | coord: 175..197 |
None | No IPR available | TMHMM | TMhelix | | coord: 239..256 |
None | No IPR available | TMHMM | TMhelix | | coord: 140..162 |
IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 538..552 |
IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 496..510 |
IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 435..688 score: 32.245 |
IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 429..723 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000001757 ID=EMLSAP00000001757|Name=EMLSAP00000001757|organism=Lepeophtheirus salmonis|type=polypeptide|length=740bp MRMEDYPENWSVEQVSEWLECNEFHSLVEPLVEKHRMDGRCLLSLSQSDC VDIIGIRVLGDVKRLLHAVDLLREPPSHQVDHPESVSIRPERGKALLAFL YALAVSWMTAFVMVIVHDRVPDTDVYPPLPDILLDNIPHITWAFEMAEIT GMVLLALWASVLIFHKHRFILARRFFSISGTIFLLRCVTMLITSLSVPGK HLKCSPRPYGDVWNKYRQAYQIWXGAGLTTQGVRTCGDYMFXGHTVGLTL LNFFITEYTSTKIYFLHTFTWICNVFGVFFILAAHEHYSIDVFIAFYISS RLFMYYHTLGNSRSDSQFAKEENRNWFWFPLFSYFEEGVHGQIPNEFEWP LTLKECVYWIDKLSLKHKAKKLSHSVSNGFANAIMSETKIEAQYTNGHAK AYQNHTKNLRSTNGVKKKKKVYSTMSIPSFRIQSIDCKQGAVRAVRYNVD GNYCLTCGSDKSIKLWNPKKGFQLRTYTGHGYEVLDARGSCDNSQIASCG MDKTVILWDVSIGTALRKWRGHAGTVNCVNFNEDSSCVLSGSIDGTIKIW DGRSKRNEPIQTLDVFKDSVTSIDVSDHEIIAGSADKTIRRFDIRNGALF TDYVGYPISSLCFTRDGQCILVNTNGGEPIKLFDKSSGELLQEFLGALNK KNYRIDATLDHKDKYVISGSENGFAYYWDLVEGNVVAKLDHGEKENAPMV NSNITVHSLSQHPSSAHLLTATGGKIHIWSDTEEIQADDE back to top
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