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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 586..614 |
None | No IPR available | GENE3D | 2.30.30.160 | | coord: 1128..1240 e-value: 1.1E-18 score: 66.7 |
None | No IPR available | PFAM | PF13832 | zf-HC5HC2H_2 | coord: 315..434 e-value: 8.0E-37 score: 125.4 |
None | No IPR available | PFAM | PF13831 | PHD_2 | coord: 274..307 e-value: 3.6E-14 score: 51.6 |
None | No IPR available | PANTHER | PTHR13793:SF18 | BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, BRPF1 | coord: 1..1260 |
None | No IPR available | PANTHER | PTHR13793 | PHD FINGER PROTEINS | coord: 1..1260 |
None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 1127..1237 |
IPR001487 | Bromodomain | PRINTS | PR00503 | BROMODOMAIN | coord: 664..680 score: 53.71 coord: 696..715 score: 34.35 |
IPR001487 | Bromodomain | SMART | SM00297 | BROMO | coord: 624..734 e-value: 3.5E-23 score: 93.0 |
IPR001487 | Bromodomain | PFAM | PF00439 | Bromodomain | coord: 651..717 e-value: 2.5E-15 score: 56.0 |
IPR001487 | Bromodomain | GENE3D | 1.20.920.10 | | coord: 635..733 e-value: 1.0E-24 score: 86.4 |
IPR001487 | Bromodomain | PROSITE | PS50014 | BROMODOMAIN_2 | coord: 647..715 score: 17.025 |
IPR001487 | Bromodomain | SUPERFAMILY | 47370 | Bromodomain | coord: 627..739 |
IPR001965 | Zinc finger, PHD-type | SMART | SM00249 | PHD | coord: 262..308 e-value: 1.4E-7 score: 41.2 coord: 372..435 e-value: 4.0E-5 score: 33.0 |
IPR000313 | PWWP domain | SMART | SM00293 | PWWP | coord: 1129..1208 e-value: 3.1E-27 score: 106.5 |
IPR000313 | PWWP domain | PFAM | PF00855 | PWWP | coord: 1130..1237 e-value: 6.7E-16 score: 58.1 |
IPR000313 | PWWP domain | PROSITE | PS50812 | PWWP | coord: 1131..1210 score: 12.562 |
IPR015880 | Zinc finger, C2H2-like | SMART | SM00355 | ZnF_C2H2 | coord: 21..46 e-value: 0.0012 score: 28.1 |
IPR019542 | Enhancer of polycomb-like, N-terminal | PFAM | PF10513 | EPL1 | coord: 87..239 e-value: 1.7E-23 score: 83.5 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | GENE3D | 3.30.160.60 | | coord: 20..42 e-value: 3.3E-4 score: 19.4 |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 258..309 e-value: 1.1E-13 score: 50.2 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 23..46 |
IPR007087 | Zinc finger, C2H2 | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 21..46 score: 9.182 |
IPR018359 | Bromodomain, conserved site | PROSITE | PS00633 | BROMODOMAIN_1 | coord: 652..707 |
IPR019786 | Zinc finger, PHD-type, conserved site | PROSITE | PS01359 | ZF_PHD_1 | coord: 263..307 |
IPR019787 | Zinc finger, PHD-finger | PROSITE | PS50016 | ZF_PHD_2 | coord: 260..310 score: 9.988 |
IPR011011 | Zinc finger, FYVE/PHD-type | SUPERFAMILY | 57903 | FYVE/PHD zinc finger | coord: 255..325 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000003128 ID=EMLSAP00000003128|Name=EMLSAP00000003128|organism=Lepeophtheirus salmonis|type=polypeptide|length=1260bp MGLDFDIRGFIEDMRACKPPYKCPWDDCGKVYKTFSGMSLHLNSSHGKTC EKVEFVAEGGPFYKSPLKESLSYVESEQMLEFEAEGRLQKISIKEPFGIM SRKAWEASLPPDALCSERKASPTPDPPKSSKKRRAGGTHEAEDGPKKQHS SKLPEALWAVIPDYYSMLSPPKSKSTLDPDKYYTFVEKSAELLDKEVEYD MDEEDVAWLDLINQKRASDSLTKITENQFELLMDRLEKEXYFHVQSNGLL SEFSQPIDDDAICCVCMDGECSNTNVILFCDLCNLAVHQECYGVPYIPEG QWLCRRCLQSPSRSVECCLCPNRGGAFKQTDDGRWAHVVCGLWIPEVRFA NTVFLEPIDSIDNIPPARWKLSCRVCKQRGVGACIQCHKTNCYTAFHVTC GLLAGLHMKMDTVRESSANGLSVTVRKTAFCDVHTPADSDCKPKLDDIAA LGISTPKTKARNTPKKSSELSPLPVLFRGLMNFSPQCPWDKAQEIASLIN VPEKTYFFERLMAYWTLKRQTRNGVPLIRRLQFAKATTKDKSPETPQKNA HLSRKKKETPPTKETKSKTKSKTKKSSKQKDSFKSLLEHRKLLRQLRQDL EKVRLLCELIRKREQRKRELIAMDEKRLTIELAPLPVFFGHVTDSLEALD THSFFDEPVSLDDVPDYLDHIKHPMDFSTIRSKLDHYKSFDCLEKDFALI YENCLSYNEKGTIFYKAGIKLKDSGSNILKEARKLYNSIGFDCNGLLLSS SSRSKSRDNASDDVLLKEIDDFLSDKNPLKKGDSAMYMKKLLEYQIKVSS VTHLGAKNRRLRALKQEITSRKRKSSVDRPNSSLSSKSKKVLNDSVASRK FDFTFEDEEEEEEEGDQNVVNASRKLRANSREGLADNLSSSTKKRGRKRI HRTEDDDDEIHENNVAKKSKLADSPRNNKESNDKCNTPAAAKSSPLGVNR RNAVLFTRKKISASQKEDESGRSSKRKVINDDIKKNSKVSPKPNTEDMEV DESPPKLDNNLNSKLDQPLSPPSNTLRKRSRRSNNPPPPSLKQPSPPKVV KPLPKASTVSPNENKNPLSSSSFQHYRRGGTEVVETDEDTQSESATDAVG SSEDETETDSDSDTSCTESSGGGHQRVPLEPLDLVWAKTRGYPWYPALII NPKMPRTGYLHNGVPIPVPPQDVLDMASTHSSPHYLILFFDSKRTWQWLQ REKLEPLGVNSKIDKSKLIQAKKPSEKKAVKKAYEDAILHRCKVTGENAN FSEESPDEKS back to top
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