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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 262..283 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 12..102
e-value: 2.4E-11
score: 42.9
coord: 184..246
e-value: 2.4E-11
score: 42.9 |
| None | No IPR available | PANTHER | PTHR11472 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER | coord: 1..769 |
| None | No IPR available | PANTHER | PTHR11472:SF1 | DNA REPAIR HELICASE RAD3/XP-D | coord: 1..769 |
| IPR001945 | Xeroderma pigmentosum group D protein | PRINTS | PR00852 | XRODRMPGMNTD | coord: 314..332
score: 67.67
coord: 339..360
score: 62.99
coord: 279..298
score: 56.43
coord: 716..736
score: 55.78
coord: 501..518
score: 59.52
coord: 645..667
score: 88.2
coord: 8..25
score: 76.19
coord: 378..400
score: 62.11
coord: 409..427
score: 67.67 |
| IPR006555 | ATP-dependent helicase, C-terminal | SMART | SM00491 | HELICc2 | coord: 551..695
e-value: 2.9E-70
score: 249.4 |
| IPR006555 | ATP-dependent helicase, C-terminal | PFAM | PF13307 | Helicase_C_2 | coord: 534..708
e-value: 1.2E-44
score: 152.1 |
| IPR006554 | Helicase-like, DEXD box c2 type | SMART | SM00488 | DEXDc2 | coord: 8..286
e-value: 2.9E-89
score: 312.5 |
| IPR010643 | Domain of unknown function DUF1227 | PFAM | PF06777 | DUF1227 | coord: 275..419
e-value: 2.9E-56
score: 189.1 |
| IPR013020 | DNA helicase (DNA repair), Rad3 type | TIGRFAM | TIGR00604 | TIGR00604 | coord: 9..717
e-value: 8.9E-247
score: 818.9 |
| IPR010614 | DEAD2 | PFAM | PF06733 | DEAD_2 | coord: 72..260
e-value: 1.7E-43
score: 147.9 |
| IPR014013 | Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type | PROSITE | PS51193 | HELICASE_ATP_BIND_2 | coord: 7..289
score: 32.074 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 193..263
coord: 459..473
coord: 31..88
coord: 538..688 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 13..129
coord: 208..247 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000003855 ID=EMLSAP00000003855|Name=EMLSAP00000003855|organism=Lepeophtheirus salmonis|type=polypeptide|length=770bp
MILNVSGLEVPFPYEYIYPEQFSYMNELKSALDAGGHGLLEMPSGTGKTA
TLLSFIVAYMRENPSQVSKLIYCSRTIPEIEKVIEEFKKLNTFYEEESSS
IGIKPLNYVALVLSSRKNMCINVDVCEGRDGATVDRACHSRIASHVRERY
AAGDETAEICTYFEDFDLKGGRDTTLPPGAYNLEDIKSFSKKRCFCPYFL
ARSVIKQANIIIXSYHYLLDPKIAEIVSKELPRNSVVVFDEGHNIDSICI
DSMSVKLTRKIMEKATASIQILEGEIHKQKEQDSLKLKEEYDKLVEGLHK
AHFERENDLILSNPILPDHVLEEAIPGNIRKAEHFVAFMKRLVEYLKTRM
RVQVVVQESPAGFLNDITKKVCIERKPLRFCAERLASLIRTLEVSHTAEF
SALTLISHFATLVSTYTKGFTLLVEPSPDDKISASNVFNPVLHFRCLDAS
IAIRPIFERFQSVIITSGTLSPLDMYPRILDFHPVVMSSFTMTLARQCIL
PLVVAKGNDQVALTSKFEARDDTAVIRNYGSLLTEVVGIVPDGVVCFFTS
YLYMENVAAAWXDQGXIDQIQKHKLLFIETQDAAETSLALLNYIKACENG
RGAVLLSVARGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLEYLR
DEFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFGRNDKKS
KLPKWIQEHLGDDVCNLSTEEAMMISKKWLRQMAQPFNREDQLGISLLTL
EQLQTREMQEKIQSKVVQQL back to top
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