EMLSAP00000004092, EMLSAP00000004092 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000004092
Unique NameEMLSAP00000004092
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length522
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006028Gamma-aminobutyric acid A receptorPRINTSPR00253GABAARECEPTRcoord: 290..310
score: 52.89
coord: 353..374
score: 44.17
coord: 498..518
score: 46.9
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 203..217
score: 50.47
coord: 124..140
score: 36.52
coord: 157..168
score: 48.15
coord: 281..293
score: 35.82
IPR006201Neurotransmitter-gated ion-channelTIGRFAMTIGR00860TIGR00860coord: 69..518
e-value: 3.7E-85
score: 284.2
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 68..521
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 78..287
e-value: 2.4E-47
score: 160.7
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 88..289
e-value: 3.2E-55
score: 186.1
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 77..286
NoneNo IPR availableGENE3D1.20.58.390coord: 495..520
e-value: 5.1E-33
score: 113.1
coord: 290..386
e-value: 5.1E-33
score: 113.1
NoneNo IPR availablePANTHERPTHR18945:SF26GLUTAMATE-GATED CHLORIDE CHANNELcoord: 68..521
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.593
NoneNo IPR availableTMHMMTMhelixcoord: 323..340
NoneNo IPR availableTMHMMTMhelixcoord: 502..521
NoneNo IPR availableTMHMMTMhelixcoord: 289..311
NoneNo IPR availableTMHMMTMhelixcoord: 355..377
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 294..515
e-value: 6.7E-14
score: 52.2
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 452..520
coord: 287..399
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 203..217

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000004092 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000004092EMLSAT00000004092-699939Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000004092 ID=EMLSAP00000004092|Name=EMLSAP00000004092|organism=Lepeophtheirus salmonis|type=polypeptide|length=522bp
MILPLSVFLVFSSKLFYGTSGCNQYLHDFCDTYEEHVQQHHAQPPHDHRH
HHGNRNKTKRSSRIFYRRQDELSSRVSRTLDALLSENRYDRQIRPQIGDS
PIKVSVNFAIRSMGPVDEQKQLFLMDCYFRQYWTDPRLVYNSSKLNELPM
NWQXLTKIWRPDTFIINGKNSYLHKMTVPNRFIRISPDGRISYSQRLTVK
ARCEMDLRKFPLDSQHCPLEIGSFGHGVDEILYNWTSMPLSMDKKLGLAQ
YHLISWNNSAFTRYSRNAGGDQNVSVIALHFTFQRRTGYYLLQIYIPLTL
IVCCSWVTFWLIKTEKGGEIPARTSLGGTXXLAIVTIGFGGKSKPRVGYA
TALDVFIVLCFMTVFAALIEFAFINFIDTLVRRLKKNDELEELSHLYPRS
AVYETVSRSYHRSISTGQGDELIDESIITLTPAQNRWKKVQATVTSRGKP
NFSKIIRQLHLEEQRKNQSKSIWLXFRSVRSLDMYQDHYKFLLRVDAVSR
KLFPLGFFILNLIYWASYIYIF
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