|
Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 417..432 score: 34.31 coord: 479..496 score: 23.8 coord: 216..226 score: 42.18 coord: 350..366 score: 40.16 coord: 329..350 score: 29.09 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 171..186 score: 57.32 coord: 212..220 score: 53.58 coord: 155..171 score: 54.03 coord: 204..212 score: 54.12 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 152..223 e-value: 8.3E-37 score: 138.3 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 154..221 e-value: 4.7E-28 score: 97.1 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 155..181 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 152..227 score: 19.783 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | SMART | SM00430 | HOLI | coord: 328..491 e-value: 1.7E-32 score: 124.0 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 309..490 e-value: 2.3E-26 score: 92.1 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 217..519 e-value: 5.0E-61 score: 205.9 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 277..519 coord: 202..236 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 151..216 e-value: 1.6E-29 score: 101.4 |
None | No IPR available | PANTHER | PTHR24086:SF0 | SUBFAMILY NOT NAMED | coord: 90..519 |
None | No IPR available | PANTHER | PTHR24086 | FAMILY NOT NAMED | coord: 90..519 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 151..229 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000004451 ID=EMLSAP00000004451|Name=EMLSAP00000004451|organism=Lepeophtheirus salmonis|type=polypeptide|length=522bp MALLSFKKENSSSSLEAMDLSSNIQVKKRKTFLEEKRHESFANSALHRLA EAAERKQIEDELMELEGSKGFSGDPSSHHYLLSNSHHPDSSSEPYILCSS SSLNRKNSDASQCSSRTNSPKIEEDPQLTIESHSSYSTHLNTSGISRQQL INSPCPVCGDKISGFHYGIFSCESCKGFFKRTVQNKKNYVCLRGSQCPVT ISTRKKCPACRFDKCLNIGMKLEAIREDRTRGGRSTYQCSYNLPTTGVCS TNSTTIPTIKRESRGDDHNTETKVNQSSGIPVLLHEIMSVEHLWFWSTSM PSLSLNNSSSNTDTSQESPSNPVQTLTLLADKRLYKLVRWCKSLPLFKNI LVDDQITLLINAWCELLVFSCCYKSVDSPGFIRLSQDKSLNLESAKSLGV NECIEKMLNFSDQLRRLKVDHYEYVSLKVILLLTSAPLYVDATGLKEVDQ VRESQEQVVQALQSYTNFHYPSMPNKFGELLLRMPELQRVCQVSKDMLQP SQGSGETSPGFNLLMELLRGDH back to top
|